data_7WDR # _model_server_result.job_id njxs7Utoa_ctq4OYQcQl2w _model_server_result.datetime_utc '2024-11-25 20:42:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wdr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 7WDR # _exptl.entry_id 7WDR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 301.249 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description '4-nitrophenyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WDR _cell.length_a 201.847 _cell.length_b 201.847 _cell.length_c 201.847 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WDR _symmetry.cell_setting ? _symmetry.Int_Tables_number 211 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C12 H15 N O8' _chem_comp.formula_weight 301.249 _chem_comp.id PNW _chem_comp.mon_nstd_flag n _chem_comp.name '4-nitrophenyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms "4'-NITROPHENYL-BETA-D-GLUCOPYRANOSIDE;4-nitrophenyl beta-D-glucoside;4-nitrophenyl D-glucoside;4-nitrophenyl glucoside" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PNW sing 260 n n C1 C2 PNW sing 261 n n C1 O5 PNW sing 262 n n N1 O7 PNW doub 263 n n N1 O8 PNW sing 264 n n N1 C10 PNW sing 265 n n O1 C7 PNW sing 266 n n C2 O2 PNW sing 267 n n C2 C3 PNW sing 268 n n C3 O3 PNW sing 269 n n C3 C4 PNW sing 270 n n C4 O4 PNW sing 271 n n C4 C5 PNW sing 272 n n C5 O5 PNW sing 273 n n C5 C6 PNW sing 274 n n C6 O6 PNW sing 275 n n C7 C8 PNW doub 276 n y C7 C12 PNW sing 277 n y C8 C9 PNW sing 278 n y C9 C10 PNW doub 279 n y C10 C11 PNW sing 280 n y C11 C12 PNW doub 281 n y C1 H1 PNW sing 282 n n C2 H2 PNW sing 283 n n O2 HO2 PNW sing 284 n n C3 H3 PNW sing 285 n n O3 HO3 PNW sing 286 n n C4 H4 PNW sing 287 n n O4 HO4 PNW sing 288 n n C5 H5 PNW sing 289 n n C6 H61 PNW sing 290 n n C6 H62 PNW sing 291 n n O6 HO6 PNW sing 292 n n C8 H8 PNW sing 293 n n C9 H9 PNW sing 294 n n C11 H11 PNW sing 295 n n C12 H12 PNW sing 296 n n # _pdbx_chem_comp_identifier.comp_id PNW _pdbx_chem_comp_identifier.identifier "4'-nitrophenyl-b-D-glucopyranoside" _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 7WDR _atom_sites.fract_transf_matrix[1][1] 0.004954 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004954 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004954 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PNW A 1 501 501 PNW PNW . C 2 PNW A 1 502 502 PNW PNW . D 3 SO4 A 1 503 601 SO4 SO4 . E 3 SO4 A 1 504 602 SO4 SO4 . F 3 SO4 A 1 505 603 SO4 SO4 . G 4 HOH A 1 601 28 HOH HOH . G 4 HOH A 2 602 21 HOH HOH . G 4 HOH A 3 603 15 HOH HOH . G 4 HOH A 4 604 31 HOH HOH . G 4 HOH A 5 605 2 HOH HOH . G 4 HOH A 6 606 16 HOH HOH . G 4 HOH A 7 607 24 HOH HOH . G 4 HOH A 8 608 6 HOH HOH . G 4 HOH A 9 609 32 HOH HOH . G 4 HOH A 10 610 1 HOH HOH . G 4 HOH A 11 611 5 HOH HOH . G 4 HOH A 12 612 3 HOH HOH . G 4 HOH A 13 613 8 HOH HOH . G 4 HOH A 14 614 23 HOH HOH . G 4 HOH A 15 615 10 HOH HOH . G 4 HOH A 16 616 22 HOH HOH . G 4 HOH A 17 617 4 HOH HOH . G 4 HOH A 18 618 13 HOH HOH . G 4 HOH A 19 619 26 HOH HOH . G 4 HOH A 20 620 17 HOH HOH . G 4 HOH A 21 621 9 HOH HOH . G 4 HOH A 22 622 12 HOH HOH . G 4 HOH A 23 623 14 HOH HOH . G 4 HOH A 24 624 30 HOH HOH . G 4 HOH A 25 625 7 HOH HOH . G 4 HOH A 26 626 38 HOH HOH . G 4 HOH A 27 627 27 HOH HOH . G 4 HOH A 28 628 20 HOH HOH . G 4 HOH A 29 629 37 HOH HOH . G 4 HOH A 30 630 40 HOH HOH . G 4 HOH A 31 631 11 HOH HOH . G 4 HOH A 32 632 36 HOH HOH . G 4 HOH A 33 633 29 HOH HOH . G 4 HOH A 34 634 19 HOH HOH . G 4 HOH A 35 635 18 HOH HOH . G 4 HOH A 36 636 33 HOH HOH . G 4 HOH A 37 637 25 HOH HOH . G 4 HOH A 38 638 39 HOH HOH . G 4 HOH A 39 639 35 HOH HOH . G 4 HOH A 40 640 41 HOH HOH . G 4 HOH A 41 641 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PNW . . . C 2 31.595 90.139 17.062 1 69.04 ? C1 PNW 502 A 1 HETATM 2 N N1 PNW . . . C 2 29.316 84.189 17.925 1 96.62 ? N1 PNW 502 A 1 HETATM 3 O O1 PNW . . . C 2 31.542 89.329 18.253 1 57.59 ? O1 PNW 502 A 1 HETATM 4 C C2 PNW . . . C 2 31.376 91.675 17.231 1 65.11 ? C2 PNW 502 A 1 HETATM 5 O O2 PNW . . . C 2 30.013 92.004 17.12 1 62.13 ? O2 PNW 502 A 1 HETATM 6 C C3 PNW . . . C 2 32.051 92.538 16.154 1 68.66 ? C3 PNW 502 A 1 HETATM 7 O O3 PNW . . . C 2 31.915 93.949 16.392 1 60.53 ? O3 PNW 502 A 1 HETATM 8 C C4 PNW . . . C 2 33.521 92.12 16.118 1 66.92 ? C4 PNW 502 A 1 HETATM 9 O O4 PNW . . . C 2 34.226 92.902 15.176 1 71.65 ? O4 PNW 502 A 1 HETATM 10 C C5 PNW . . . C 2 33.64 90.654 15.698 1 74.23 ? C5 PNW 502 A 1 HETATM 11 O O5 PNW . . . C 2 32.878 89.753 16.529 1 73.71 ? O5 PNW 502 A 1 HETATM 12 C C6 PNW . . . C 2 35.094 90.145 15.66 1 74.51 ? C6 PNW 502 A 1 HETATM 13 O O6 PNW . . . C 2 35.672 90.167 16.965 1 70.62 ? O6 PNW 502 A 1 HETATM 14 C C7 PNW . . . C 2 31.03 88.057 18.149 1 73.96 ? C7 PNW 502 A 1 HETATM 15 O O7 PNW . . . C 2 28.135 84.132 17.558 1 106.34 ? O7 PNW 502 A 1 HETATM 16 C C8 PNW . . . C 2 31.205 87.268 17.003 1 76.66 ? C8 PNW 502 A 1 HETATM 17 O O8 PNW . . . C 2 29.973 82.996 18.231 1 82.39 ? O8 PNW 502 A 1 HETATM 18 C C9 PNW . . . C 2 30.647 85.993 16.935 1 80.39 ? C9 PNW 502 A 1 HETATM 19 C C10 PNW . . . C 2 29.921 85.471 18.002 1 82.29 ? C10 PNW 502 A 1 HETATM 20 C C11 PNW . . . C 2 29.762 86.256 19.132 1 74.96 ? C11 PNW 502 A 1 HETATM 21 C C12 PNW . . . C 2 30.311 87.524 19.213 1 74.8 ? C12 PNW 502 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 500 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 21 #