data_7WDU
#
_model_server_result.job_id            MFe4CNmJ31o31KaOsfda7w 
_model_server_result.datetime_utc      '2024-11-15 08:43:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7wdu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":901}' 
#
_entry.id    7WDU 
#
_exptl.entry_id    7WDU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              433.39 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[[(3R,4R,5S,6R)-3-acetamido-4,5-bis(oxidanyl)-6-(sulfooxymethyl)oxan-2-ylidene]amino] N-phenylcarbamate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.7 
_cell.angle_gamma         90 
_cell.entry_id            7WDU 
_cell.length_a            77.404 
_cell.length_b            58.947 
_cell.length_c            84.353 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7WDU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 192 A CYS 229 1_555 A SG CYS 225 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
disulf ? disulf2 A SG CYS 616 A CYS 653 1_555 A SG CYS 619 A CYS 656 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc1 A O LEU 34 A LEU 71 1_555 D CA CA . A CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc2 A OD1 ASP 37 A ASP 74 1_555 D CA CA . A CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? 
metalc ? metalc3 A O SER 57 A SER 94 1_555 D CA CA . A CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc4 A OG SER 57 A SER 94 1_555 D CA CA . A CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? 
metalc ? metalc5 A O TRP 151 A TRP 188 1_555 D CA CA . A CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc6 A OE2 GLU 152 A GLU 189 1_555 D CA CA . A CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? 
#
_chem_comp.formula           'C15 H19 N3 O10 S' 
_chem_comp.formula_weight    433.39 
_chem_comp.id                8R9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[[(3R,4R,5S,6R)-3-acetamido-4,5-bis(oxidanyl)-6-(sulfooxymethyl)oxan-2-ylidene]amino] N-phenylcarbamate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C11 C10 8R9 doub 1 n y 
C11 C6 8R9 sing 2 n y 
C10 C9 8R9 sing 3 n y 
N3 C6 8R9 sing 4 n n 
N3 C5 8R9 sing 5 n n 
O2 N2 8R9 sing 6 n n 
O2 C5 8R9 sing 7 n n 
C6 C7 8R9 doub 8 n y 
O10 C15 8R9 sing 9 n n 
C9 C8 8R9 doub 10 n y 
N1 C3 8R9 sing 11 n n 
N1 C2 8R9 sing 12 n n 
C3 C4 8R9 sing 13 n n 
C3 C15 8R9 sing 14 n n 
C7 C8 8R9 sing 15 n y 
N2 C4 8R9 doub 16 z n 
C5 O3 8R9 doub 17 n n 
C4 O4 8R9 sing 18 n n 
C15 C14 8R9 sing 19 n n 
C1 C2 8R9 sing 20 n n 
C2 O1 8R9 doub 21 n n 
C14 O9 8R9 sing 22 n n 
C14 C12 8R9 sing 23 n n 
O4 C12 8R9 sing 24 n n 
C12 C13 8R9 sing 25 n n 
C13 O5 8R9 sing 26 n n 
O8 S1 8R9 doub 27 n n 
O5 S1 8R9 sing 28 n n 
S1 O6 8R9 doub 29 n n 
S1 O7 8R9 sing 30 n n 
C1 H1 8R9 sing 31 n n 
C1 H2 8R9 sing 32 n n 
C1 H3 8R9 sing 33 n n 
N1 H4 8R9 sing 34 n n 
C3 H5 8R9 sing 35 n n 
N3 H6 8R9 sing 36 n n 
C7 H7 8R9 sing 37 n n 
C8 H8 8R9 sing 38 n n 
C9 H9 8R9 sing 39 n n 
C10 H10 8R9 sing 40 n n 
C11 H11 8R9 sing 41 n n 
C12 H12 8R9 sing 42 n n 
C13 H13 8R9 sing 43 n n 
C13 H14 8R9 sing 44 n n 
C14 H15 8R9 sing 45 n n 
O9 H16 8R9 sing 46 n n 
C15 H17 8R9 sing 47 n n 
O10 H18 8R9 sing 48 n n 
O7 H19 8R9 sing 49 n n 
#
_atom_sites.entry_id                     7WDU 
_atom_sites.fract_transf_matrix[1][1]    0.012919 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000384 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016964 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01186 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 8R9 A 1 901 901 8R9 P6X . 
C 2 8R9 A 1 902 902 8R9 P6X . 
D 3 CA A 1 903 1 CA CA . 
E 4 HOH A 1 1001 104 HOH HOH . 
E 4 HOH A 2 1002 17 HOH HOH . 
E 4 HOH A 3 1003 26 HOH HOH . 
E 4 HOH A 4 1004 84 HOH HOH . 
E 4 HOH A 5 1005 90 HOH HOH . 
E 4 HOH A 6 1006 73 HOH HOH . 
E 4 HOH A 7 1007 27 HOH HOH . 
E 4 HOH A 8 1008 30 HOH HOH . 
E 4 HOH A 9 1009 54 HOH HOH . 
E 4 HOH A 10 1010 59 HOH HOH . 
E 4 HOH A 11 1011 45 HOH HOH . 
E 4 HOH A 12 1012 5 HOH HOH . 
E 4 HOH A 13 1013 95 HOH HOH . 
E 4 HOH A 14 1014 72 HOH HOH . 
E 4 HOH A 15 1015 47 HOH HOH . 
E 4 HOH A 16 1016 40 HOH HOH . 
E 4 HOH A 17 1017 65 HOH HOH . 
E 4 HOH A 18 1018 60 HOH HOH . 
E 4 HOH A 19 1019 67 HOH HOH . 
E 4 HOH A 20 1020 9 HOH HOH . 
E 4 HOH A 21 1021 31 HOH HOH . 
E 4 HOH A 22 1022 89 HOH HOH . 
E 4 HOH A 23 1023 69 HOH HOH . 
E 4 HOH A 24 1024 13 HOH HOH . 
E 4 HOH A 25 1025 71 HOH HOH . 
E 4 HOH A 26 1026 34 HOH HOH . 
E 4 HOH A 27 1027 103 HOH HOH . 
E 4 HOH A 28 1028 7 HOH HOH . 
E 4 HOH A 29 1029 52 HOH HOH . 
E 4 HOH A 30 1030 63 HOH HOH . 
E 4 HOH A 31 1031 35 HOH HOH . 
E 4 HOH A 32 1032 107 HOH HOH . 
E 4 HOH A 33 1033 49 HOH HOH . 
E 4 HOH A 34 1034 75 HOH HOH . 
E 4 HOH A 35 1035 21 HOH HOH . 
E 4 HOH A 36 1036 51 HOH HOH . 
E 4 HOH A 37 1037 81 HOH HOH . 
E 4 HOH A 38 1038 85 HOH HOH . 
E 4 HOH A 39 1039 24 HOH HOH . 
E 4 HOH A 40 1040 92 HOH HOH . 
E 4 HOH A 41 1041 38 HOH HOH . 
E 4 HOH A 42 1042 25 HOH HOH . 
E 4 HOH A 43 1043 88 HOH HOH . 
E 4 HOH A 44 1044 66 HOH HOH . 
E 4 HOH A 45 1045 56 HOH HOH . 
E 4 HOH A 46 1046 44 HOH HOH . 
E 4 HOH A 47 1047 111 HOH HOH . 
E 4 HOH A 48 1048 78 HOH HOH . 
E 4 HOH A 49 1049 93 HOH HOH . 
E 4 HOH A 50 1050 20 HOH HOH . 
E 4 HOH A 51 1051 80 HOH HOH . 
E 4 HOH A 52 1052 28 HOH HOH . 
E 4 HOH A 53 1053 74 HOH HOH . 
E 4 HOH A 54 1054 77 HOH HOH . 
E 4 HOH A 55 1055 112 HOH HOH . 
E 4 HOH A 56 1056 57 HOH HOH . 
E 4 HOH A 57 1057 10 HOH HOH . 
E 4 HOH A 58 1058 3 HOH HOH . 
E 4 HOH A 59 1059 2 HOH HOH . 
E 4 HOH A 60 1060 113 HOH HOH . 
E 4 HOH A 61 1061 8 HOH HOH . 
E 4 HOH A 62 1062 6 HOH HOH . 
E 4 HOH A 63 1063 105 HOH HOH . 
E 4 HOH A 64 1064 110 HOH HOH . 
E 4 HOH A 65 1065 109 HOH HOH . 
E 4 HOH A 66 1066 19 HOH HOH . 
E 4 HOH A 67 1067 48 HOH HOH . 
E 4 HOH A 68 1068 91 HOH HOH . 
E 4 HOH A 69 1069 29 HOH HOH . 
E 4 HOH A 70 1070 33 HOH HOH . 
E 4 HOH A 71 1071 102 HOH HOH . 
E 4 HOH A 72 1072 62 HOH HOH . 
E 4 HOH A 73 1073 68 HOH HOH . 
E 4 HOH A 74 1074 87 HOH HOH . 
E 4 HOH A 75 1075 46 HOH HOH . 
E 4 HOH A 76 1076 58 HOH HOH . 
E 4 HOH A 77 1077 14 HOH HOH . 
E 4 HOH A 78 1078 76 HOH HOH . 
E 4 HOH A 79 1079 12 HOH HOH . 
E 4 HOH A 80 1080 43 HOH HOH . 
E 4 HOH A 81 1081 70 HOH HOH . 
E 4 HOH A 82 1082 50 HOH HOH . 
E 4 HOH A 83 1083 4 HOH HOH . 
E 4 HOH A 84 1084 83 HOH HOH . 
E 4 HOH A 85 1085 16 HOH HOH . 
E 4 HOH A 86 1086 36 HOH HOH . 
E 4 HOH A 87 1087 94 HOH HOH . 
E 4 HOH A 88 1088 15 HOH HOH . 
E 4 HOH A 89 1089 101 HOH HOH . 
E 4 HOH A 90 1090 39 HOH HOH . 
E 4 HOH A 91 1091 11 HOH HOH . 
E 4 HOH A 92 1092 41 HOH HOH . 
E 4 HOH A 93 1093 79 HOH HOH . 
E 4 HOH A 94 1094 106 HOH HOH . 
E 4 HOH A 95 1095 55 HOH HOH . 
E 4 HOH A 96 1096 64 HOH HOH . 
E 4 HOH A 97 1097 108 HOH HOH . 
E 4 HOH A 98 1098 82 HOH HOH . 
E 4 HOH A 99 1099 98 HOH HOH . 
E 4 HOH A 100 1100 42 HOH HOH . 
E 4 HOH A 101 1101 23 HOH HOH . 
E 4 HOH A 102 1102 61 HOH HOH . 
E 4 HOH A 103 1103 86 HOH HOH . 
E 4 HOH A 104 1104 32 HOH HOH . 
E 4 HOH A 105 1105 37 HOH HOH . 
E 4 HOH A 106 1106 53 HOH HOH . 
E 4 HOH A 107 1107 22 HOH HOH . 
E 4 HOH A 108 1108 1 HOH HOH . 
E 4 HOH A 109 1109 100 HOH HOH . 
E 4 HOH A 110 1110 18 HOH HOH . 
E 4 HOH A 111 1111 99 HOH HOH . 
E 4 HOH A 112 1112 96 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 8R9 . . . B 2 14.117 0.698 -9.794 1 39.2 ? C1 8R9 901 A 1 
HETATM 2 C C2 8R9 . . . B 2 14.561 2.123 -9.664 1 38.35 ? C2 8R9 901 A 1 
HETATM 3 O O1 8R9 . . . B 2 14.347 2.78 -8.647 1 37.95 ? O1 8R9 901 A 1 
HETATM 4 N N1 8R9 . . . B 2 15.22 2.627 -10.722 1 38.16 ? N1 8R9 901 A 1 
HETATM 5 C C3 8R9 . . . B 2 16.075 3.81 -10.659 1 41.88 ? C3 8R9 901 A 1 
HETATM 6 C C4 8R9 . . . B 2 15.299 4.958 -10.013 1 42.99 ? C4 8R9 901 A 1 
HETATM 7 N N2 8R9 . . . B 2 14.097 5.298 -10.483 1 39.87 ? N2 8R9 901 A 1 
HETATM 8 O O2 8R9 . . . B 2 14.128 6.558 -11.102 1 50.87 ? O2 8R9 901 A 1 
HETATM 9 C C5 8R9 . . . B 2 13.569 7.537 -10.37 1 60.61 ? C5 8R9 901 A 1 
HETATM 10 O O3 8R9 . . . B 2 13.815 7.723 -9.198 1 58.77 ? O3 8R9 901 A 1 
HETATM 11 N N3 8R9 . . . B 2 12.76 8.301 -11.152 1 61.54 ? N3 8R9 901 A 1 
HETATM 12 C C6 8R9 . . . B 2 12.599 9.705 -11.085 1 68.21 ? C6 8R9 901 A 1 
HETATM 13 C C7 8R9 . . . B 2 13.613 10.517 -10.588 1 70.91 ? C7 8R9 901 A 1 
HETATM 14 C C8 8R9 . . . B 2 13.438 11.892 -10.536 1 71.46 ? C8 8R9 901 A 1 
HETATM 15 C C9 8R9 . . . B 2 12.257 12.46 -10.967 1 73.29 ? C9 8R9 901 A 1 
HETATM 16 C C10 8R9 . . . B 2 11.251 11.657 -11.461 1 73.99 ? C10 8R9 901 A 1 
HETATM 17 C C11 8R9 . . . B 2 11.413 10.281 -11.521 1 68.67 ? C11 8R9 901 A 1 
HETATM 18 O O4 8R9 . . . B 2 15.787 5.582 -8.925 1 42.58 ? O4 8R9 901 A 1 
HETATM 19 C C12 8R9 . . . B 2 16.986 5.103 -8.258 1 43.28 ? C12 8R9 901 A 1 
HETATM 20 C C13 8R9 . . . B 2 17.46 6.213 -7.38 1 43.72 ? C13 8R9 901 A 1 
HETATM 21 O O5 8R9 . . . B 2 16.526 6.369 -6.334 1 43.39 ? O5 8R9 901 A 1 
HETATM 22 S S1 8R9 . . . B 2 16.314 7.778 -5.719 1 37.32 ? S1 8R9 901 A 1 
HETATM 23 O O6 8R9 . . . B 2 17.527 8.497 -5.559 1 48.39 ? O6 8R9 901 A 1 
HETATM 24 O O7 8R9 . . . B 2 15.656 7.62 -4.314 1 40.9 ? O7 8R9 901 A 1 
HETATM 25 O O8 8R9 . . . B 2 15.387 8.464 -6.708 1 45.63 ? O8 8R9 901 A 1 
HETATM 26 C C14 8R9 . . . B 2 17.998 4.659 -9.283 1 40.57 ? C14 8R9 901 A 1 
HETATM 27 O O9 8R9 . . . B 2 19.212 4.346 -8.624 1 36.83 ? O9 8R9 901 A 1 
HETATM 28 C C15 8R9 . . . B 2 17.423 3.455 -10.01 1 40.85 ? C15 8R9 901 A 1 
HETATM 29 O O10 8R9 . . . B 2 18.313 2.991 -11.033 1 40.5 ? O10 8R9 901 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           29 
#