data_7WDU # _model_server_result.job_id l5uLkZb5pXGaA_gwvXTuzw _model_server_result.datetime_utc '2024-11-15 08:30:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wdu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":903}' # _entry.id 7WDU # _exptl.entry_id 7WDU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.7 _cell.angle_gamma 90 _cell.entry_id 7WDU _cell.length_a 77.404 _cell.length_b 58.947 _cell.length_c 84.353 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WDU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 192 A CYS 229 1_555 A SG CYS 225 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? disulf ? disulf2 A SG CYS 616 A CYS 653 1_555 A SG CYS 619 A CYS 656 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc1 A O LEU 34 A LEU 71 1_555 D CA CA . A CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc2 A OD1 ASP 37 A ASP 74 1_555 D CA CA . A CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? metalc ? metalc3 A O SER 57 A SER 94 1_555 D CA CA . A CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc4 A OG SER 57 A SER 94 1_555 D CA CA . A CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc5 A O TRP 151 A TRP 188 1_555 D CA CA . A CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc6 A OE2 GLU 152 A GLU 189 1_555 D CA CA . A CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7WDU _atom_sites.fract_transf_matrix[1][1] 0.012919 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000384 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016964 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01186 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8R9 A 1 901 901 8R9 P6X . C 2 8R9 A 1 902 902 8R9 P6X . D 3 CA A 1 903 1 CA CA . E 4 HOH A 1 1001 104 HOH HOH . E 4 HOH A 2 1002 17 HOH HOH . E 4 HOH A 3 1003 26 HOH HOH . E 4 HOH A 4 1004 84 HOH HOH . E 4 HOH A 5 1005 90 HOH HOH . E 4 HOH A 6 1006 73 HOH HOH . E 4 HOH A 7 1007 27 HOH HOH . E 4 HOH A 8 1008 30 HOH HOH . E 4 HOH A 9 1009 54 HOH HOH . E 4 HOH A 10 1010 59 HOH HOH . E 4 HOH A 11 1011 45 HOH HOH . E 4 HOH A 12 1012 5 HOH HOH . E 4 HOH A 13 1013 95 HOH HOH . E 4 HOH A 14 1014 72 HOH HOH . E 4 HOH A 15 1015 47 HOH HOH . E 4 HOH A 16 1016 40 HOH HOH . E 4 HOH A 17 1017 65 HOH HOH . E 4 HOH A 18 1018 60 HOH HOH . E 4 HOH A 19 1019 67 HOH HOH . E 4 HOH A 20 1020 9 HOH HOH . E 4 HOH A 21 1021 31 HOH HOH . E 4 HOH A 22 1022 89 HOH HOH . E 4 HOH A 23 1023 69 HOH HOH . E 4 HOH A 24 1024 13 HOH HOH . E 4 HOH A 25 1025 71 HOH HOH . E 4 HOH A 26 1026 34 HOH HOH . E 4 HOH A 27 1027 103 HOH HOH . E 4 HOH A 28 1028 7 HOH HOH . E 4 HOH A 29 1029 52 HOH HOH . E 4 HOH A 30 1030 63 HOH HOH . E 4 HOH A 31 1031 35 HOH HOH . E 4 HOH A 32 1032 107 HOH HOH . E 4 HOH A 33 1033 49 HOH HOH . E 4 HOH A 34 1034 75 HOH HOH . E 4 HOH A 35 1035 21 HOH HOH . E 4 HOH A 36 1036 51 HOH HOH . E 4 HOH A 37 1037 81 HOH HOH . E 4 HOH A 38 1038 85 HOH HOH . E 4 HOH A 39 1039 24 HOH HOH . E 4 HOH A 40 1040 92 HOH HOH . E 4 HOH A 41 1041 38 HOH HOH . E 4 HOH A 42 1042 25 HOH HOH . E 4 HOH A 43 1043 88 HOH HOH . E 4 HOH A 44 1044 66 HOH HOH . E 4 HOH A 45 1045 56 HOH HOH . E 4 HOH A 46 1046 44 HOH HOH . E 4 HOH A 47 1047 111 HOH HOH . E 4 HOH A 48 1048 78 HOH HOH . E 4 HOH A 49 1049 93 HOH HOH . E 4 HOH A 50 1050 20 HOH HOH . E 4 HOH A 51 1051 80 HOH HOH . E 4 HOH A 52 1052 28 HOH HOH . E 4 HOH A 53 1053 74 HOH HOH . E 4 HOH A 54 1054 77 HOH HOH . E 4 HOH A 55 1055 112 HOH HOH . E 4 HOH A 56 1056 57 HOH HOH . E 4 HOH A 57 1057 10 HOH HOH . E 4 HOH A 58 1058 3 HOH HOH . E 4 HOH A 59 1059 2 HOH HOH . E 4 HOH A 60 1060 113 HOH HOH . E 4 HOH A 61 1061 8 HOH HOH . E 4 HOH A 62 1062 6 HOH HOH . E 4 HOH A 63 1063 105 HOH HOH . E 4 HOH A 64 1064 110 HOH HOH . E 4 HOH A 65 1065 109 HOH HOH . E 4 HOH A 66 1066 19 HOH HOH . E 4 HOH A 67 1067 48 HOH HOH . E 4 HOH A 68 1068 91 HOH HOH . E 4 HOH A 69 1069 29 HOH HOH . E 4 HOH A 70 1070 33 HOH HOH . E 4 HOH A 71 1071 102 HOH HOH . E 4 HOH A 72 1072 62 HOH HOH . E 4 HOH A 73 1073 68 HOH HOH . E 4 HOH A 74 1074 87 HOH HOH . E 4 HOH A 75 1075 46 HOH HOH . E 4 HOH A 76 1076 58 HOH HOH . E 4 HOH A 77 1077 14 HOH HOH . E 4 HOH A 78 1078 76 HOH HOH . E 4 HOH A 79 1079 12 HOH HOH . E 4 HOH A 80 1080 43 HOH HOH . E 4 HOH A 81 1081 70 HOH HOH . E 4 HOH A 82 1082 50 HOH HOH . E 4 HOH A 83 1083 4 HOH HOH . E 4 HOH A 84 1084 83 HOH HOH . E 4 HOH A 85 1085 16 HOH HOH . E 4 HOH A 86 1086 36 HOH HOH . E 4 HOH A 87 1087 94 HOH HOH . E 4 HOH A 88 1088 15 HOH HOH . E 4 HOH A 89 1089 101 HOH HOH . E 4 HOH A 90 1090 39 HOH HOH . E 4 HOH A 91 1091 11 HOH HOH . E 4 HOH A 92 1092 41 HOH HOH . E 4 HOH A 93 1093 79 HOH HOH . E 4 HOH A 94 1094 106 HOH HOH . E 4 HOH A 95 1095 55 HOH HOH . E 4 HOH A 96 1096 64 HOH HOH . E 4 HOH A 97 1097 108 HOH HOH . E 4 HOH A 98 1098 82 HOH HOH . E 4 HOH A 99 1099 98 HOH HOH . E 4 HOH A 100 1100 42 HOH HOH . E 4 HOH A 101 1101 23 HOH HOH . E 4 HOH A 102 1102 61 HOH HOH . E 4 HOH A 103 1103 86 HOH HOH . E 4 HOH A 104 1104 32 HOH HOH . E 4 HOH A 105 1105 37 HOH HOH . E 4 HOH A 106 1106 53 HOH HOH . E 4 HOH A 107 1107 22 HOH HOH . E 4 HOH A 108 1108 1 HOH HOH . E 4 HOH A 109 1109 100 HOH HOH . E 4 HOH A 110 1110 18 HOH HOH . E 4 HOH A 111 1111 99 HOH HOH . E 4 HOH A 112 1112 96 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 5.943 _atom_site.Cartn_y 18.705 _atom_site.Cartn_z 54.098 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.3 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 903 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 1 #