data_7WE4 # _model_server_result.job_id rldVbCgoIFikd3iRx3gIdw _model_server_result.datetime_utc '2024-10-19 16:36:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7we4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2001}' # _entry.id 7WE4 # _exptl.entry_id 7WE4 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WE4 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WE4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 1803 NAG 2 n B NAG 2 B 2 NAG A 1804 NAG 2 n C NAG 1 C 1 NAG A 1806 NAG 2 n C NAG 2 C 2 NAG A 1807 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 276 A CYS 276 1_555 A SG CYS 319 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 310 A CYS 310 1_555 A SG CYS 325 A CYS 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 857 A CYS 857 1_555 A SG CYS 866 A CYS 866 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 1310 A CYS 1310 1_555 A SG CYS 1332 A CYS 1332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 A SG CYS 1678 A CYS 1678 1_555 A SG CYS 1692 A CYS 1692 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? covale ? covale1 A ND2 ASN 312 A ASN 312 1_555 E C1 NAG . A NAG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.531 ? covale ? covale2 A ND2 ASN 819 A ASN 819 1_555 D C1 NAG . A NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale3 A ND2 ASN 1312 A ASN 1312 1_555 F C1 NAG . A NAG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale4 A ND2 ASN 1328 A ASN 1328 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.585 ? covale ? covale5 A ND2 ASN 1336 A ASN 1336 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale6 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale7 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 445 n n C1 O1 NAG sing 446 n n C1 O5 NAG sing 447 n n C1 H1 NAG sing 448 n n C2 C3 NAG sing 449 n n C2 N2 NAG sing 450 n n C2 H2 NAG sing 451 n n C3 C4 NAG sing 452 n n C3 O3 NAG sing 453 n n C3 H3 NAG sing 454 n n C4 C5 NAG sing 455 n n C4 O4 NAG sing 456 n n C4 H4 NAG sing 457 n n C5 C6 NAG sing 458 n n C5 O5 NAG sing 459 n n C5 H5 NAG sing 460 n n C6 O6 NAG sing 461 n n C6 H61 NAG sing 462 n n C6 H62 NAG sing 463 n n C7 C8 NAG sing 464 n n C7 N2 NAG sing 465 n n C7 O7 NAG doub 466 n n C8 H81 NAG sing 467 n n C8 H82 NAG sing 468 n n C8 H83 NAG sing 469 n n N2 HN2 NAG sing 470 n n O1 HO1 NAG sing 471 n n O3 HO3 NAG sing 472 n n O4 HO4 NAG sing 473 n n O6 HO6 NAG sing 474 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7WE4 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NAG A 1 2001 1801 NAG NAG . E 3 NAG A 1 2002 1802 NAG NAG . F 3 NAG A 1 2003 1805 NAG NAG . G 4 95T A 1 2004 1901 95T LIG . H 5 CLR A 1 2005 2001 CLR CLR . I 6 PCW A 1 2006 2003 PCW PCW . J 6 PCW A 1 2007 2004 PCW PCW . K 7 LPE A 1 2008 2005 LPE LPE . L 7 LPE A 1 2009 2006 LPE LPE . M 6 PCW A 1 2010 2007 PCW PCW . N 7 LPE A 1 2011 2008 LPE LPE . O 7 LPE A 1 2012 2009 LPE LPE . P 6 PCW A 1 2013 2010 PCW PCW . Q 6 PCW A 1 2014 2014 PCW PCW . R 7 LPE A 1 2015 2016 LPE LPE . S 5 CLR A 1 2016 2017 CLR CLR . T 7 LPE A 1 2017 2018 LPE LPE . U 7 LPE A 1 2018 2019 LPE LPE . V 7 LPE A 1 2019 2020 LPE LPE . W 7 LPE A 1 2020 2021 LPE LPE . X 5 CLR A 1 2021 2022 CLR CLR . Y 8 P5S A 1 2022 2101 P5S P5S . Z 8 P5S A 1 2023 2102 P5S P5S . AA 8 P5S A 1 2024 2103 P5S P5S . BA 5 CLR A 1 2025 1 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 3 137.814 110.965 156.931 1 20 ? C1 NAG 2001 A 1 HETATM 2 C C2 NAG . . . D 3 138.61 110.008 156.047 1 20 ? C2 NAG 2001 A 1 HETATM 3 C C3 NAG . . . D 3 138.79 108.668 156.743 1 20 ? C3 NAG 2001 A 1 HETATM 4 C C4 NAG . . . D 3 139.514 108.983 158.037 1 20 ? C4 NAG 2001 A 1 HETATM 5 C C5 NAG . . . D 3 138.681 109.931 158.887 1 20 ? C5 NAG 2001 A 1 HETATM 6 C C6 NAG . . . D 3 139.412 110.261 160.185 1 20 ? C6 NAG 2001 A 1 HETATM 7 C C7 NAG . . . D 3 138.014 109 153.832 1 20 ? C7 NAG 2001 A 1 HETATM 8 C C8 NAG . . . D 3 136.797 108.158 153.613 1 20 ? C8 NAG 2001 A 1 HETATM 9 N N2 NAG . . . D 3 137.922 109.951 154.758 1 20 ? N2 NAG 2001 A 1 HETATM 10 O O3 NAG . . . D 3 139.592 107.755 155.993 1 20 ? O3 NAG 2001 A 1 HETATM 11 O O4 NAG . . . D 3 139.741 107.776 158.773 1 20 ? O4 NAG 2001 A 1 HETATM 12 O O5 NAG . . . D 3 138.392 111.163 158.22 1 20 ? O5 NAG 2001 A 1 HETATM 13 O O6 NAG . . . D 3 138.54 110.986 161.06 1 20 ? O6 NAG 2001 A 1 HETATM 14 O O7 NAG . . . D 3 139.032 108.833 153.185 1 20 ? O7 NAG 2001 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #