data_7WE4 # _model_server_result.job_id '_S832AZ7bd9oBA8F-C5yRg' _model_server_result.datetime_utc '2024-10-19 16:42:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7we4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":2007}' # _entry.id 7WE4 # _exptl.entry_id 7WE4 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 787.121 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WE4 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WE4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 J N N ? 6 M N N ? 6 P N N ? 6 Q N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 1803 NAG 2 n B NAG 2 B 2 NAG A 1804 NAG 2 n C NAG 1 C 1 NAG A 1806 NAG 2 n C NAG 2 C 2 NAG A 1807 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 276 A CYS 276 1_555 A SG CYS 319 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 310 A CYS 310 1_555 A SG CYS 325 A CYS 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 857 A CYS 857 1_555 A SG CYS 866 A CYS 866 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 1310 A CYS 1310 1_555 A SG CYS 1332 A CYS 1332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 A SG CYS 1678 A CYS 1678 1_555 A SG CYS 1692 A CYS 1692 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? covale ? covale1 A ND2 ASN 312 A ASN 312 1_555 E C1 NAG . A NAG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.531 ? covale ? covale2 A ND2 ASN 819 A ASN 819 1_555 D C1 NAG . A NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale3 A ND2 ASN 1312 A ASN 1312 1_555 F C1 NAG . A NAG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale4 A ND2 ASN 1328 A ASN 1328 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.585 ? covale ? covale5 A ND2 ASN 1336 A ASN 1336 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale6 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale7 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C44 H85 N O8 P 1' _chem_comp.formula_weight 787.121 _chem_comp.id PCW _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (Z,Z)-4-HYDROXY-N,N,N-TRIMETHYL-10-OXO-7-[(1-OXO-9-OCTADECENYL)OXY]-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-18-EN-1-AMINIUM-4-OXIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PCW sing 610 n n C1 O3P PCW sing 611 n n C1 H11 PCW sing 612 n n C1 H12 PCW sing 613 n n C2 C3 PCW sing 614 n n C2 O2 PCW sing 615 n n C2 H2 PCW sing 616 n n C3 O3 PCW sing 617 n n C3 H31 PCW sing 618 n n C3 H32 PCW sing 619 n n C4 C5 PCW sing 620 n n C4 O4P PCW sing 621 n n C4 H41 PCW sing 622 n n C4 H42 PCW sing 623 n n C5 N PCW sing 624 n n C5 H51 PCW sing 625 n n C5 H52 PCW sing 626 n n C6 N PCW sing 627 n n C6 H61 PCW sing 628 n n C6 H62 PCW sing 629 n n C6 H63 PCW sing 630 n n C7 N PCW sing 631 n n C7 H71 PCW sing 632 n n C7 H72 PCW sing 633 n n C7 H73 PCW sing 634 n n C8 N PCW sing 635 n n C8 H81 PCW sing 636 n n C8 H82 PCW sing 637 n n C8 H83 PCW sing 638 n n C11 C12 PCW sing 639 n n C11 O3 PCW sing 640 n n C11 O11 PCW doub 641 n n C12 C13 PCW sing 642 n n C12 H121 PCW sing 643 n n C12 H122 PCW sing 644 n n C13 C14 PCW sing 645 n n C13 H131 PCW sing 646 n n C13 H132 PCW sing 647 n n C14 C15 PCW sing 648 n n C14 H141 PCW sing 649 n n C14 H142 PCW sing 650 n n C15 C16 PCW sing 651 n n C15 H151 PCW sing 652 n n C15 H152 PCW sing 653 n n C16 C17 PCW sing 654 n n C16 H161 PCW sing 655 n n C16 H162 PCW sing 656 n n C17 C18 PCW sing 657 n n C17 H171 PCW sing 658 n n C17 H172 PCW sing 659 n n C18 C19 PCW sing 660 n n C18 H181 PCW sing 661 n n C18 H182 PCW sing 662 n n C19 C20 PCW doub 663 z n C19 H19 PCW sing 664 n n C20 C21 PCW sing 665 n n C20 H20 PCW sing 666 n n C21 C22 PCW sing 667 n n C21 H211 PCW sing 668 n n C21 H212 PCW sing 669 n n C22 C23 PCW sing 670 n n C22 H221 PCW sing 671 n n C22 H222 PCW sing 672 n n C23 C24 PCW sing 673 n n C23 H231 PCW sing 674 n n C23 H232 PCW sing 675 n n C24 C25 PCW sing 676 n n C24 H241 PCW sing 677 n n C24 H242 PCW sing 678 n n C25 C26 PCW sing 679 n n C25 H251 PCW sing 680 n n C25 H252 PCW sing 681 n n C26 C27 PCW sing 682 n n C26 H261 PCW sing 683 n n C26 H262 PCW sing 684 n n C27 C28 PCW sing 685 n n C27 H271 PCW sing 686 n n C27 H272 PCW sing 687 n n C28 H281 PCW sing 688 n n C28 H282 PCW sing 689 n n C28 H283 PCW sing 690 n n C31 C32 PCW sing 691 n n C31 O2 PCW sing 692 n n C31 O31 PCW doub 693 n n C32 C33 PCW sing 694 n n C32 H321 PCW sing 695 n n C32 H322 PCW sing 696 n n C33 C34 PCW sing 697 n n C33 H331 PCW sing 698 n n C33 H332 PCW sing 699 n n C34 C35 PCW sing 700 n n C34 H341 PCW sing 701 n n C34 H342 PCW sing 702 n n C35 C36 PCW sing 703 n n C35 H351 PCW sing 704 n n C35 H352 PCW sing 705 n n C36 C37 PCW sing 706 n n C36 H361 PCW sing 707 n n C36 H362 PCW sing 708 n n C37 C38 PCW sing 709 n n C37 H371 PCW sing 710 n n C37 H372 PCW sing 711 n n C38 C39 PCW sing 712 n n C38 H381 PCW sing 713 n n C38 H382 PCW sing 714 n n C39 C40 PCW doub 715 z n C39 H39 PCW sing 716 n n C40 C41 PCW sing 717 n n C40 H40 PCW sing 718 n n C41 C42 PCW sing 719 n n C41 H411 PCW sing 720 n n C41 H412 PCW sing 721 n n C42 C43 PCW sing 722 n n C42 H421 PCW sing 723 n n C42 H422 PCW sing 724 n n C43 C44 PCW sing 725 n n C43 H431 PCW sing 726 n n C43 H432 PCW sing 727 n n C44 C45 PCW sing 728 n n C44 H441 PCW sing 729 n n C44 H442 PCW sing 730 n n C45 C46 PCW sing 731 n n C45 H451 PCW sing 732 n n C45 H452 PCW sing 733 n n C46 C47 PCW sing 734 n n C46 H461 PCW sing 735 n n C46 H462 PCW sing 736 n n C47 C48 PCW sing 737 n n C47 H471 PCW sing 738 n n C47 H472 PCW sing 739 n n C48 H481 PCW sing 740 n n C48 H482 PCW sing 741 n n C48 H483 PCW sing 742 n n O1P P PCW sing 743 n n O1P H1P PCW sing 744 n n O2P P PCW doub 745 n n O3P P PCW sing 746 n n O4P P PCW sing 747 n n # _atom_sites.entry_id 7WE4 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NAG A 1 2001 1801 NAG NAG . E 3 NAG A 1 2002 1802 NAG NAG . F 3 NAG A 1 2003 1805 NAG NAG . G 4 95T A 1 2004 1901 95T LIG . H 5 CLR A 1 2005 2001 CLR CLR . I 6 PCW A 1 2006 2003 PCW PCW . J 6 PCW A 1 2007 2004 PCW PCW . K 7 LPE A 1 2008 2005 LPE LPE . L 7 LPE A 1 2009 2006 LPE LPE . M 6 PCW A 1 2010 2007 PCW PCW . N 7 LPE A 1 2011 2008 LPE LPE . O 7 LPE A 1 2012 2009 LPE LPE . P 6 PCW A 1 2013 2010 PCW PCW . Q 6 PCW A 1 2014 2014 PCW PCW . R 7 LPE A 1 2015 2016 LPE LPE . S 5 CLR A 1 2016 2017 CLR CLR . T 7 LPE A 1 2017 2018 LPE LPE . U 7 LPE A 1 2018 2019 LPE LPE . V 7 LPE A 1 2019 2020 LPE LPE . W 7 LPE A 1 2020 2021 LPE LPE . X 5 CLR A 1 2021 2022 CLR CLR . Y 8 P5S A 1 2022 2101 P5S P5S . Z 8 P5S A 1 2023 2102 P5S P5S . AA 8 P5S A 1 2024 2103 P5S P5S . BA 5 CLR A 1 2025 1 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PCW . . . J 6 157.951 129.401 105.771 1 20 ? C1 PCW 2007 A 1 HETATM 2 C C2 PCW . . . J 6 158.801 130.588 106.238 1 20 ? C2 PCW 2007 A 1 HETATM 3 C C3 PCW . . . J 6 158.1 131.375 107.358 1 20 ? C3 PCW 2007 A 1 HETATM 4 C C4 PCW . . . J 6 158.034 126.294 101.764 1 20 ? C4 PCW 2007 A 1 HETATM 5 C C5 PCW . . . J 6 158.627 126.542 100.381 1 20 ? C5 PCW 2007 A 1 HETATM 6 C C6 PCW . . . J 6 160.38 125.079 101.167 1 20 ? C6 PCW 2007 A 1 HETATM 7 C C7 PCW . . . J 6 160.425 125.913 98.934 1 20 ? C7 PCW 2007 A 1 HETATM 8 C C8 PCW . . . J 6 160.845 127.413 100.728 1 20 ? C8 PCW 2007 A 1 HETATM 9 C C11 PCW . . . J 6 156.36 131.267 109.123 1 20 ? C11 PCW 2007 A 1 HETATM 10 C C12 PCW . . . J 6 155.515 130.52 110.121 1 20 ? C12 PCW 2007 A 1 HETATM 11 C C13 PCW . . . J 6 156.242 130.383 111.447 1 20 ? C13 PCW 2007 A 1 HETATM 12 C C14 PCW . . . J 6 156.348 131.716 112.163 1 20 ? C14 PCW 2007 A 1 HETATM 13 C C15 PCW . . . J 6 155.794 131.625 113.574 1 20 ? C15 PCW 2007 A 1 HETATM 14 C C16 PCW . . . J 6 156.595 130.647 114.412 1 20 ? C16 PCW 2007 A 1 HETATM 15 C C17 PCW . . . J 6 156.3 130.885 115.882 1 20 ? C17 PCW 2007 A 1 HETATM 16 C C18 PCW . . . J 6 157.057 129.899 116.755 1 20 ? C18 PCW 2007 A 1 HETATM 17 C C19 PCW . . . J 6 156.977 130.37 118.185 1 20 ? C19 PCW 2007 A 1 HETATM 18 C C20 PCW . . . J 6 156.863 129.507 119.195 1 20 ? C20 PCW 2007 A 1 HETATM 19 C C21 PCW . . . J 6 156.806 128.015 118.961 1 20 ? C21 PCW 2007 A 1 HETATM 20 C C31 PCW . . . J 6 160.263 129.514 107.938 1 20 ? C31 PCW 2007 A 1 HETATM 21 C C32 PCW . . . J 6 161.123 130.094 109.033 1 20 ? C32 PCW 2007 A 1 HETATM 22 C C33 PCW . . . J 6 160.403 129.839 110.348 1 20 ? C33 PCW 2007 A 1 HETATM 23 C C34 PCW . . . J 6 161.352 129.819 111.529 1 20 ? C34 PCW 2007 A 1 HETATM 24 C C35 PCW . . . J 6 160.544 129.879 112.812 1 20 ? C35 PCW 2007 A 1 HETATM 25 C C36 PCW . . . J 6 161.46 129.758 114.011 1 20 ? C36 PCW 2007 A 1 HETATM 26 C C37 PCW . . . J 6 160.672 129.958 115.289 1 20 ? C37 PCW 2007 A 1 HETATM 27 C C38 PCW . . . J 6 161.553 129.685 116.496 1 20 ? C38 PCW 2007 A 1 HETATM 28 C C39 PCW . . . J 6 160.921 130.322 117.702 1 20 ? C39 PCW 2007 A 1 HETATM 29 C C40 PCW . . . J 6 160.796 129.686 118.862 1 20 ? C40 PCW 2007 A 1 HETATM 30 C C41 PCW . . . J 6 161.271 128.271 119.09 1 20 ? C41 PCW 2007 A 1 HETATM 31 C C42 PCW . . . J 6 161.025 127.96 120.561 1 20 ? C42 PCW 2007 A 1 HETATM 32 C C43 PCW . . . J 6 161.536 126.586 120.964 1 20 ? C43 PCW 2007 A 1 HETATM 33 C C44 PCW . . . J 6 161.585 126.443 122.48 1 20 ? C44 PCW 2007 A 1 HETATM 34 C C45 PCW . . . J 6 160.217 126.587 123.131 1 20 ? C45 PCW 2007 A 1 HETATM 35 C C46 PCW . . . J 6 160.365 126.516 124.645 1 20 ? C46 PCW 2007 A 1 HETATM 36 C C47 PCW . . . J 6 159.032 126.465 125.382 1 20 ? C47 PCW 2007 A 1 HETATM 37 C C48 PCW . . . J 6 158.356 127.814 125.416 1 20 ? C48 PCW 2007 A 1 HETATM 38 N N PCW . . . J 6 160.065 126.236 100.32 1 20 ? N PCW 2007 A 1 HETATM 39 O O2 PCW . . . J 6 160.119 130.165 106.642 1 20 ? O2 PCW 2007 A 1 HETATM 40 O O3 PCW . . . J 6 157.345 130.594 108.284 1 20 ? O3 PCW 2007 A 1 HETATM 41 O O11 PCW . . . J 6 156.219 132.47 109.01 1 20 ? O11 PCW 2007 A 1 HETATM 42 O O31 PCW . . . J 6 159.714 128.445 108.139 1 20 ? O31 PCW 2007 A 1 HETATM 43 O O1P PCW . . . J 6 159.928 127.008 104.052 1 20 ? O1P PCW 2007 A 1 HETATM 44 O O2P PCW . . . J 6 157.472 126.676 104.831 1 20 ? O2P PCW 2007 A 1 HETATM 45 O O3P PCW . . . J 6 158.445 128.993 104.496 1 20 ? O3P PCW 2007 A 1 HETATM 46 O O4P PCW . . . J 6 158.035 127.501 102.519 1 20 ? O4P PCW 2007 A 1 HETATM 47 P P PCW . . . J 6 158.494 127.453 104.047 1 20 ? P PCW 2007 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 47 #