data_7WE4 # _model_server_result.job_id '_onXhWzUDd5Fbn7e2KOJZQ' _model_server_result.datetime_utc '2024-11-23 09:58:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7we4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":2019}' # _entry.id 7WE4 # _exptl.entry_id 7WE4 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 510.708 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WE4 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WE4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 K N N ? 7 L N N ? 7 N N N ? 7 O N N ? 7 R N N ? 7 T N N ? 7 U N N ? 7 V N N ? 7 W N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 1803 NAG 2 n B NAG 2 B 2 NAG A 1804 NAG 2 n C NAG 1 C 1 NAG A 1806 NAG 2 n C NAG 2 C 2 NAG A 1807 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 276 A CYS 276 1_555 A SG CYS 319 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 310 A CYS 310 1_555 A SG CYS 325 A CYS 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 857 A CYS 857 1_555 A SG CYS 866 A CYS 866 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 1310 A CYS 1310 1_555 A SG CYS 1332 A CYS 1332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 A SG CYS 1678 A CYS 1678 1_555 A SG CYS 1692 A CYS 1692 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? covale ? covale1 A ND2 ASN 312 A ASN 312 1_555 E C1 NAG . A NAG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.531 ? covale ? covale2 A ND2 ASN 819 A ASN 819 1_555 D C1 NAG . A NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale3 A ND2 ASN 1312 A ASN 1312 1_555 F C1 NAG . A NAG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale4 A ND2 ASN 1328 A ASN 1328 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.585 ? covale ? covale5 A ND2 ASN 1336 A ASN 1336 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale6 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale7 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C26 H57 N O6 P 1' _chem_comp.formula_weight 510.708 _chem_comp.id LPE _chem_comp.mon_nstd_flag . _chem_comp.name 1-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms LPC-ETHER # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 LPE sing 312 n n C1 C2 LPE sing 313 n n C1 H11 LPE sing 314 n n C1 H12 LPE sing 315 n n O1 C11 LPE sing 316 n n C2 O2H LPE sing 317 n n C2 C3 LPE sing 318 n n C2 H21 LPE sing 319 n n O2H HO21 LPE sing 320 n n C3 O3 LPE sing 321 n n C3 H31 LPE sing 322 n n C3 H32 LPE sing 323 n n C11 C12 LPE sing 324 n n C11 H111 LPE sing 325 n n C11 H112 LPE sing 326 n n C12 C13 LPE sing 327 n n C12 H121 LPE sing 328 n n C12 H122 LPE sing 329 n n O3 P LPE sing 330 n n P O31 LPE doub 331 n n P O32 LPE sing 332 n n P O33 LPE sing 333 n n O32 HO31 LPE sing 334 n n O33 C31 LPE sing 335 n n C31 C32 LPE sing 336 n n C31 H311 LPE sing 337 n n C31 H312 LPE sing 338 n n C32 N LPE sing 339 n n C32 H321 LPE sing 340 n n C32 H322 LPE sing 341 n n N C1N LPE sing 342 n n N C2N LPE sing 343 n n N C3N LPE sing 344 n n C1N H1N1 LPE sing 345 n n C1N H1N2 LPE sing 346 n n C1N H1N3 LPE sing 347 n n C2N H2N1 LPE sing 348 n n C2N H2N2 LPE sing 349 n n C2N H2N3 LPE sing 350 n n C3N H3N1 LPE sing 351 n n C3N H3N2 LPE sing 352 n n C3N H3N3 LPE sing 353 n n C13 C14 LPE sing 354 n n C13 H131 LPE sing 355 n n C13 H132 LPE sing 356 n n C14 C15 LPE sing 357 n n C14 H141 LPE sing 358 n n C14 H142 LPE sing 359 n n C15 C16 LPE sing 360 n n C15 H151 LPE sing 361 n n C15 H152 LPE sing 362 n n C16 C17 LPE sing 363 n n C16 H161 LPE sing 364 n n C16 H162 LPE sing 365 n n C17 C18 LPE sing 366 n n C17 H171 LPE sing 367 n n C17 H172 LPE sing 368 n n C18 C19 LPE sing 369 n n C18 H181 LPE sing 370 n n C18 H182 LPE sing 371 n n C19 C20 LPE sing 372 n n C19 H191 LPE sing 373 n n C19 H192 LPE sing 374 n n C20 C21 LPE sing 375 n n C20 H201 LPE sing 376 n n C20 H202 LPE sing 377 n n C21 C22 LPE sing 378 n n C21 H211 LPE sing 379 n n C21 H212 LPE sing 380 n n C22 C23 LPE sing 381 n n C22 H221 LPE sing 382 n n C22 H222 LPE sing 383 n n C23 C24 LPE sing 384 n n C23 H231 LPE sing 385 n n C23 H232 LPE sing 386 n n C24 C25 LPE sing 387 n n C24 H241 LPE sing 388 n n C24 H242 LPE sing 389 n n C25 C26 LPE sing 390 n n C25 H251 LPE sing 391 n n C25 H252 LPE sing 392 n n C26 C27 LPE sing 393 n n C26 H261 LPE sing 394 n n C26 H262 LPE sing 395 n n C27 C28 LPE sing 396 n n C27 H271 LPE sing 397 n n C27 H272 LPE sing 398 n n C28 H281 LPE sing 399 n n C28 H282 LPE sing 400 n n C28 H283 LPE sing 401 n n # _atom_sites.entry_id 7WE4 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NAG A 1 2001 1801 NAG NAG . E 3 NAG A 1 2002 1802 NAG NAG . F 3 NAG A 1 2003 1805 NAG NAG . G 4 95T A 1 2004 1901 95T LIG . H 5 CLR A 1 2005 2001 CLR CLR . I 6 PCW A 1 2006 2003 PCW PCW . J 6 PCW A 1 2007 2004 PCW PCW . K 7 LPE A 1 2008 2005 LPE LPE . L 7 LPE A 1 2009 2006 LPE LPE . M 6 PCW A 1 2010 2007 PCW PCW . N 7 LPE A 1 2011 2008 LPE LPE . O 7 LPE A 1 2012 2009 LPE LPE . P 6 PCW A 1 2013 2010 PCW PCW . Q 6 PCW A 1 2014 2014 PCW PCW . R 7 LPE A 1 2015 2016 LPE LPE . S 5 CLR A 1 2016 2017 CLR CLR . T 7 LPE A 1 2017 2018 LPE LPE . U 7 LPE A 1 2018 2019 LPE LPE . V 7 LPE A 1 2019 2020 LPE LPE . W 7 LPE A 1 2020 2021 LPE LPE . X 5 CLR A 1 2021 2022 CLR CLR . Y 8 P5S A 1 2022 2101 P5S P5S . Z 8 P5S A 1 2023 2102 P5S P5S . AA 8 P5S A 1 2024 2103 P5S P5S . BA 5 CLR A 1 2025 1 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LPE . . . V 7 110.556 156.638 140.286 1 20 ? C1 LPE 2019 A 1 HETATM 2 O O1 LPE . . . V 7 111.286 156.846 139.1 1 20 ? O1 LPE 2019 A 1 HETATM 3 C C2 LPE . . . V 7 111.447 156.894 141.431 1 20 ? C2 LPE 2019 A 1 HETATM 4 O O2H LPE . . . V 7 111.641 158.251 141.36 1 20 ? O2H LPE 2019 A 1 HETATM 5 C C3 LPE . . . V 7 110.623 156.856 142.646 1 20 ? C3 LPE 2019 A 1 HETATM 6 C C11 LPE . . . V 7 110.459 156.758 137.98 1 20 ? C11 LPE 2019 A 1 HETATM 7 C C12 LPE . . . V 7 111.272 155.931 137.028 1 20 ? C12 LPE 2019 A 1 HETATM 8 O O3 LPE . . . V 7 111.618 156.844 143.641 1 20 ? O3 LPE 2019 A 1 HETATM 9 P P LPE . . . V 7 111.516 157.357 145.129 1 20 ? P LPE 2019 A 1 HETATM 10 O O31 LPE . . . V 7 112.699 158.167 145.268 1 20 ? O31 LPE 2019 A 1 HETATM 11 O O32 LPE . . . V 7 110.255 158.055 145.38 1 20 ? O32 LPE 2019 A 1 HETATM 12 O O33 LPE . . . V 7 111.621 156.05 146.017 1 20 ? O33 LPE 2019 A 1 HETATM 13 C C31 LPE . . . V 7 111.555 156.139 147.407 1 20 ? C31 LPE 2019 A 1 HETATM 14 C C32 LPE . . . V 7 112.384 157.34 147.81 1 20 ? C32 LPE 2019 A 1 HETATM 15 N N LPE . . . V 7 112.73 157.343 149.23 1 20 ? N LPE 2019 A 1 HETATM 16 C C1N LPE . . . V 7 111.487 157.397 149.991 1 20 ? C1N LPE 2019 A 1 HETATM 17 C C2N LPE . . . V 7 113.497 156.17 149.62 1 20 ? C2N LPE 2019 A 1 HETATM 18 C C3N LPE . . . V 7 113.595 158.487 149.46 1 20 ? C3N LPE 2019 A 1 HETATM 19 C C13 LPE . . . V 7 110.673 156.067 135.651 1 20 ? C13 LPE 2019 A 1 HETATM 20 C C14 LPE . . . V 7 111.735 155.857 134.611 1 20 ? C14 LPE 2019 A 1 HETATM 21 C C15 LPE . . . V 7 111.363 154.828 133.561 1 20 ? C15 LPE 2019 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 21 #