data_7WFF # _model_server_result.job_id TeYLeI2u0WXfCFZ27pFwOQ _model_server_result.datetime_utc '2024-11-16 22:34:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wff # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":802}' # _entry.id 7WFF # _exptl.entry_id 7WFF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 795.116 _entity.id 19 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WFF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WFF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptadecameric _pdbx_struct_assembly.oligomeric_count 17 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 19 _struct_asym.id T _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 J SG CYS 120 c CYS 120 1_555 U FE1 FES . c FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc2 J SG CYS 126 c CYS 126 1_555 U FE1 FES . c FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc3 J SG CYS 129 c CYS 129 1_555 U FE2 FES . c FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc4 J SG CYS 162 c CYS 162 1_555 U FE2 FES . c FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? # _chem_comp.formula 'C41 H78 O12 S' _chem_comp.formula_weight 795.116 _chem_comp.id SQD _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SULFOQUINOVOSYLDIACYLGLYCEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C44 SQD sing 415 n n O6 C1 SQD sing 416 n n C44 C45 SQD sing 417 n n C44 H441 SQD sing 418 n n C44 H442 SQD sing 419 n n C45 C46 SQD sing 420 n n C45 O47 SQD sing 421 n n C45 H45 SQD sing 422 n n C46 O48 SQD sing 423 n n C46 H461 SQD sing 424 n n C46 H462 SQD sing 425 n n O47 C7 SQD sing 426 n n C7 O49 SQD doub 427 n n C7 C8 SQD sing 428 n n C8 C9 SQD sing 429 n n C8 H81 SQD sing 430 n n C8 H82 SQD sing 431 n n C9 C10 SQD sing 432 n n C9 H91 SQD sing 433 n n C9 H92 SQD sing 434 n n C10 C11 SQD sing 435 n n C10 H101 SQD sing 436 n n C10 H102 SQD sing 437 n n C11 C12 SQD sing 438 n n C11 H111 SQD sing 439 n n C11 H112 SQD sing 440 n n C12 C13 SQD sing 441 n n C12 H121 SQD sing 442 n n C12 H122 SQD sing 443 n n C13 C14 SQD sing 444 n n C13 H131 SQD sing 445 n n C13 H132 SQD sing 446 n n C14 C15 SQD sing 447 n n C14 H141 SQD sing 448 n n C14 H142 SQD sing 449 n n C15 C16 SQD sing 450 n n C15 H151 SQD sing 451 n n C15 H152 SQD sing 452 n n C16 C17 SQD sing 453 n n C16 H161 SQD sing 454 n n C16 H162 SQD sing 455 n n C17 C18 SQD sing 456 n n C17 H171 SQD sing 457 n n C17 H172 SQD sing 458 n n C18 C19 SQD sing 459 n n C18 H181 SQD sing 460 n n C18 H182 SQD sing 461 n n C19 C20 SQD sing 462 n n C19 H191 SQD sing 463 n n C19 H192 SQD sing 464 n n C20 C21 SQD sing 465 n n C20 H201 SQD sing 466 n n C20 H202 SQD sing 467 n n C21 C22 SQD sing 468 n n C21 H211 SQD sing 469 n n C21 H212 SQD sing 470 n n C22 H221 SQD sing 471 n n C22 H222 SQD sing 472 n n C22 H223 SQD sing 473 n n O48 C23 SQD sing 474 n n C23 O10 SQD doub 475 n n C23 C24 SQD sing 476 n n C24 C25 SQD sing 477 n n C24 H241 SQD sing 478 n n C24 H242 SQD sing 479 n n C25 C26 SQD sing 480 n n C25 H251 SQD sing 481 n n C25 H252 SQD sing 482 n n C26 C27 SQD sing 483 n n C26 H261 SQD sing 484 n n C26 H262 SQD sing 485 n n C27 C28 SQD sing 486 n n C27 H271 SQD sing 487 n n C27 H272 SQD sing 488 n n C28 C29 SQD sing 489 n n C28 H281 SQD sing 490 n n C28 H282 SQD sing 491 n n C29 C30 SQD sing 492 n n C29 H291 SQD sing 493 n n C29 H292 SQD sing 494 n n C30 C31 SQD sing 495 n n C30 H301 SQD sing 496 n n C30 H302 SQD sing 497 n n C31 C32 SQD sing 498 n n C31 H311 SQD sing 499 n n C31 H312 SQD sing 500 n n C32 C33 SQD sing 501 n n C32 H321 SQD sing 502 n n C32 H322 SQD sing 503 n n C33 C34 SQD sing 504 n n C33 H331 SQD sing 505 n n C33 H332 SQD sing 506 n n C34 C35 SQD sing 507 n n C34 H341 SQD sing 508 n n C34 H342 SQD sing 509 n n C35 C36 SQD sing 510 n n C35 H351 SQD sing 511 n n C35 H352 SQD sing 512 n n C36 C37 SQD sing 513 n n C36 H361 SQD sing 514 n n C36 H362 SQD sing 515 n n C37 C38 SQD sing 516 n n C37 H371 SQD sing 517 n n C37 H372 SQD sing 518 n n C38 H381 SQD sing 519 n n C38 H382 SQD sing 520 n n C38 H383 SQD sing 521 n n C1 C2 SQD sing 522 n n C1 O5 SQD sing 523 n n C1 H1 SQD sing 524 n n C2 O2 SQD sing 525 n n C2 C3 SQD sing 526 n n C2 H2 SQD sing 527 n n O2 HO2 SQD sing 528 n n C3 O3 SQD sing 529 n n C3 C4 SQD sing 530 n n C3 H3 SQD sing 531 n n O3 HO3 SQD sing 532 n n C4 O4 SQD sing 533 n n C4 C5 SQD sing 534 n n C4 H4 SQD sing 535 n n O4 HO4 SQD sing 536 n n C5 C6 SQD sing 537 n n C5 O5 SQD sing 538 n n C5 H5 SQD sing 539 n n C6 S SQD sing 540 n n C6 H61 SQD sing 541 n n C6 H62 SQD sing 542 n n S O7 SQD doub 543 n n S O8 SQD sing 544 n n S O9 SQD doub 545 n n O8 HO8 SQD sing 546 n n # _atom_sites.entry_id 7WFF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code R 18 LHG D 1 601 603 LHG LHG . S 18 LHG F 1 801 601 LHG LHG . T 19 SQD F 1 802 602 SQD SQD . U 20 FES c 1 301 201 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O6 SQD . . . T 19 -24.181 23.417 6.136 1 49.06 ? O6 SQD 802 F 1 HETATM 2 C C44 SQD . . . T 19 -24.59 24.515 5.341 1 49.06 ? C44 SQD 802 F 1 HETATM 3 C C45 SQD . . . T 19 -24.3 25.833 6.062 1 49.06 ? C45 SQD 802 F 1 HETATM 4 C C46 SQD . . . T 19 -22.82 25.977 6.41 1 49.06 ? C46 SQD 802 F 1 HETATM 5 O O47 SQD . . . T 19 -24.752 26.953 5.321 1 49.06 ? O47 SQD 802 F 1 HETATM 6 C C7 SQD . . . T 19 -24.643 28.263 5.86 1 49.06 ? C7 SQD 802 F 1 HETATM 7 O O49 SQD . . . T 19 -25.484 28.662 6.646 1 49.06 ? O49 SQD 802 F 1 HETATM 8 C C8 SQD . . . T 19 -23.658 29.257 5.237 1 49.06 ? C8 SQD 802 F 1 HETATM 9 C C9 SQD . . . T 19 -24.12 30.697 5.459 1 49.06 ? C9 SQD 802 F 1 HETATM 10 C C10 SQD . . . T 19 -23.337 31.645 4.559 1 49.06 ? C10 SQD 802 F 1 HETATM 11 C C11 SQD . . . T 19 -21.86 31.696 4.962 1 49.06 ? C11 SQD 802 F 1 HETATM 12 O O48 SQD . . . T 19 -22.684 26.635 7.655 1 49.06 ? O48 SQD 802 F 1 HETATM 13 C C23 SQD . . . T 19 -21.389 26.941 8.152 1 49.06 ? C23 SQD 802 F 1 HETATM 14 O O10 SQD . . . T 19 -20.759 26.091 8.744 1 49.06 ? O10 SQD 802 F 1 HETATM 15 C C24 SQD . . . T 19 -20.655 28.169 7.639 1 49.06 ? C24 SQD 802 F 1 HETATM 16 C C25 SQD . . . T 19 -19.762 28.758 8.728 1 49.06 ? C25 SQD 802 F 1 HETATM 17 C C26 SQD . . . T 19 -19.18 30.101 8.254 1 49.06 ? C26 SQD 802 F 1 HETATM 18 C C27 SQD . . . T 19 -17.665 30.009 8.023 1 49.06 ? C27 SQD 802 F 1 HETATM 19 C C28 SQD . . . T 19 -17.23 31.106 7.042 1 49.06 ? C28 SQD 802 F 1 HETATM 20 C C29 SQD . . . T 19 -15.766 30.89 6.629 1 49.06 ? C29 SQD 802 F 1 HETATM 21 C C1 SQD . . . T 19 -24.758 22.128 6.009 1 49.06 ? C1 SQD 802 F 1 HETATM 22 C C2 SQD . . . T 19 -23.689 21.07 6.068 1 49.06 ? C2 SQD 802 F 1 HETATM 23 O O2 SQD . . . T 19 -22.712 21.334 5.136 1 49.06 ? O2 SQD 802 F 1 HETATM 24 C C3 SQD . . . T 19 -24.237 19.701 5.792 1 49.06 ? C3 SQD 802 F 1 HETATM 25 O O3 SQD . . . T 19 -24.863 19.257 6.937 1 49.06 ? O3 SQD 802 F 1 HETATM 26 C C4 SQD . . . T 19 -25.19 19.634 4.637 1 49.06 ? C4 SQD 802 F 1 HETATM 27 O O4 SQD . . . T 19 -24.46 19.595 3.474 1 49.06 ? O4 SQD 802 F 1 HETATM 28 C C5 SQD . . . T 19 -26.142 20.79 4.557 1 49.06 ? C5 SQD 802 F 1 HETATM 29 C C6 SQD . . . T 19 -27.326 20.583 5.476 1 49.06 ? C6 SQD 802 F 1 HETATM 30 O O5 SQD . . . T 19 -25.553 22.034 4.856 1 49.06 ? O5 SQD 802 F 1 HETATM 31 S S SQD . . . T 19 -28.448 19.337 4.863 1 49.06 ? S SQD 802 F 1 HETATM 32 O O7 SQD . . . T 19 -28.444 19.264 3.423 1 49.06 ? O7 SQD 802 F 1 HETATM 33 O O8 SQD . . . T 19 -28.13 18.027 5.461 1 49.06 ? O8 SQD 802 F 1 HETATM 34 O O9 SQD . . . T 19 -29.823 19.69 5.119 1 49.06 ? O9 SQD 802 F 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 34 #