data_7WGD # _model_server_result.job_id Lu2qFbSOHrd3DferPEqfUw _model_server_result.datetime_utc '2024-11-08 09:52:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wgd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":704}' # _entry.id 7WGD # _exptl.entry_id 7WGD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 486.726 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WGD _cell.length_a 96.388 _cell.length_b 140.709 _cell.length_c 168.021 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WGD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 124 A CYS 148 1_555 A SG CYS 133 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 C SG CYS 146 H CYS 146 1_555 C SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A O GLY 18 A GLY 42 1_555 E NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc2 A O ALA 20 A ALA 44 1_555 D NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? metalc ? metalc3 A O VAL 21 A VAL 45 1_555 E NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc4 A OD1 ASN 25 A ASN 49 1_555 D NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc5 A O SER 255 A SER 320 1_555 D NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc6 A OG SER 255 A SER 320 1_555 D NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? metalc ? metalc7 A O LEU 352 A LEU 417 1_555 E NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc8 A OD1 ASP 355 A ASP 420 1_555 E NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc9 A OG SER 356 A SER 421 1_555 E NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 453 n n CBA CAB Y01 sing 454 n n CBA CAN Y01 sing 455 n n CAN CAJ Y01 sing 456 n n CAJ CAO Y01 sing 457 n n CAO CBB Y01 sing 458 n n CBB CAC Y01 sing 459 n n CBB CBE Y01 sing 460 n n CBE CAP Y01 sing 461 n n CBE CBI Y01 sing 462 n n CAP CAQ Y01 sing 463 n n CAQ CBG Y01 sing 464 n n CBG CBI Y01 sing 465 n n CBG CBD Y01 sing 466 n n CBI CAE Y01 sing 467 n n CBI CAU Y01 sing 468 n n CAU CAS Y01 sing 469 n n CAS CBF Y01 sing 470 n n CBF CBD Y01 sing 471 n n CBF CBH Y01 sing 472 n n CBD CAK Y01 sing 473 n n CAK CAI Y01 sing 474 n n CAI CAZ Y01 doub 475 n n CAZ CAV Y01 sing 476 n n CAZ CBH Y01 sing 477 n n CAV CBC Y01 sing 478 n n CBH CAD Y01 sing 479 n n CBH CAT Y01 sing 480 n n CAT CAR Y01 sing 481 n n CAR CBC Y01 sing 482 n n CBC OAW Y01 sing 483 n n OAW CAY Y01 sing 484 n n CAY OAG Y01 doub 485 n n CAY CAM Y01 sing 486 n n CAM CAL Y01 sing 487 n n CAL CAX Y01 sing 488 n n CAX OAH Y01 sing 489 n n CAX OAF Y01 doub 490 n n CAA HAA1 Y01 sing 491 n n CAA HAA2 Y01 sing 492 n n CAA HAA3 Y01 sing 493 n n CBA HBA Y01 sing 494 n n CAB HAB1 Y01 sing 495 n n CAB HAB2 Y01 sing 496 n n CAB HAB3 Y01 sing 497 n n CAN HAN1 Y01 sing 498 n n CAN HAN2 Y01 sing 499 n n CAJ HAJ1 Y01 sing 500 n n CAJ HAJ2 Y01 sing 501 n n CAO HAO1 Y01 sing 502 n n CAO HAO2 Y01 sing 503 n n CBB HBB Y01 sing 504 n n CAC HAC1 Y01 sing 505 n n CAC HAC2 Y01 sing 506 n n CAC HAC3 Y01 sing 507 n n CBE HBE Y01 sing 508 n n CAP HAP1 Y01 sing 509 n n CAP HAP2 Y01 sing 510 n n CAQ HAQ1 Y01 sing 511 n n CAQ HAQ2 Y01 sing 512 n n CBG HBG Y01 sing 513 n n CBD HBD Y01 sing 514 n n CAE HAE1 Y01 sing 515 n n CAE HAE2 Y01 sing 516 n n CAE HAE3 Y01 sing 517 n n CAU HAU1 Y01 sing 518 n n CAU HAU2 Y01 sing 519 n n CAS HAS1 Y01 sing 520 n n CAS HAS2 Y01 sing 521 n n CBF HBF Y01 sing 522 n n CAK HAK1 Y01 sing 523 n n CAK HAK2 Y01 sing 524 n n CAI HAI Y01 sing 525 n n CAV HAV1 Y01 sing 526 n n CAV HAV2 Y01 sing 527 n n CBC HBC Y01 sing 528 n n CAD HAD1 Y01 sing 529 n n CAD HAD2 Y01 sing 530 n n CAD HAD3 Y01 sing 531 n n CAT HAT1 Y01 sing 532 n n CAT HAT2 Y01 sing 533 n n CAR HAR1 Y01 sing 534 n n CAR HAR2 Y01 sing 535 n n CAM HAM1 Y01 sing 536 n n CAM HAM2 Y01 sing 537 n n CAL HAL1 Y01 sing 538 n n CAL HAL2 Y01 sing 539 n n OAH HAH Y01 sing 540 n n # _atom_sites.entry_id 7WGD _atom_sites.fract_transf_matrix[1][1] 0.010375 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007107 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005952 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NA A 1 701 1 NA NA . E 4 NA A 1 702 2 NA NA . F 5 CL A 1 703 3 CL CL . G 6 Y01 A 1 704 1 Y01 Y01 . H 7 CLR A 1 705 1 CLR CLR . I 8 HOH A 1 801 8 HOH HOH . I 8 HOH A 2 802 10 HOH HOH . I 8 HOH A 3 803 2 HOH HOH . I 8 HOH A 4 804 14 HOH HOH . I 8 HOH A 5 805 16 HOH HOH . I 8 HOH A 6 806 13 HOH HOH . I 8 HOH A 7 807 9 HOH HOH . I 8 HOH A 8 808 17 HOH HOH . I 8 HOH A 9 809 7 HOH HOH . I 8 HOH A 10 810 11 HOH HOH . I 8 HOH A 11 811 1 HOH HOH . I 8 HOH A 12 812 5 HOH HOH . I 8 HOH A 13 813 15 HOH HOH . I 8 HOH A 14 814 3 HOH HOH . I 8 HOH A 15 815 6 HOH HOH . I 8 HOH A 16 816 4 HOH HOH . J 8 HOH L 1 301 20 HOH HOH . J 8 HOH L 2 302 21 HOH HOH . J 8 HOH L 3 303 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . G 6 7.444 1.157 39.324 1 93.28 ? CAA Y01 704 A 1 HETATM 2 C CBA Y01 . . . G 6 7.456 -0.345 39.615 1 87.29 ? CBA Y01 704 A 1 HETATM 3 C CAB Y01 . . . G 6 8.685 -0.991 38.947 1 93.43 ? CAB Y01 704 A 1 HETATM 4 C CAN Y01 . . . G 6 7.523 -0.569 41.171 1 83.26 ? CAN Y01 704 A 1 HETATM 5 C CAJ Y01 . . . G 6 6.197 -0.098 41.799 1 96.42 ? CAJ Y01 704 A 1 HETATM 6 C CAO Y01 . . . G 6 6.227 -0.333 43.333 1 96.68 ? CAO Y01 704 A 1 HETATM 7 C CBB Y01 . . . G 6 5.052 -1.248 43.756 1 95.57 ? CBB Y01 704 A 1 HETATM 8 C CAC Y01 . . . G 6 5.151 -2.541 42.974 1 89.15 ? CAC Y01 704 A 1 HETATM 9 C CBE Y01 . . . G 6 5.154 -1.507 45.274 1 98.72 ? CBE Y01 704 A 1 HETATM 10 C CAP Y01 . . . G 6 5.552 -0.141 46.007 1 99.13 ? CAP Y01 704 A 1 HETATM 11 C CAQ Y01 . . . G 6 4.596 -0.023 47.302 1 96.23 ? CAQ Y01 704 A 1 HETATM 12 C CBG Y01 . . . G 6 4.114 -1.527 47.377 1 102.14 ? CBG Y01 704 A 1 HETATM 13 C CBI Y01 . . . G 6 3.907 -1.94 45.901 1 99.38 ? CBI Y01 704 A 1 HETATM 14 C CAE Y01 . . . G 6 2.721 -1.177 45.316 1 93.86 ? CAE Y01 704 A 1 HETATM 15 C CAU Y01 . . . G 6 3.613 -3.561 45.88 1 90.4 ? CAU Y01 704 A 1 HETATM 16 C CAS Y01 . . . G 6 2.466 -3.857 47.007 1 92.32 ? CAS Y01 704 A 1 HETATM 17 C CBF Y01 . . . G 6 2.789 -3.322 48.22 1 95.5 ? CBF Y01 704 A 1 HETATM 18 C CBD Y01 . . . G 6 2.956 -1.738 48.1 1 98.23 ? CBD Y01 704 A 1 HETATM 19 C CAK Y01 . . . G 6 3.157 -1.213 49.652 1 103.16 ? CAK Y01 704 A 1 HETATM 20 C CAI Y01 . . . G 6 2.26 -1.763 50.445 1 104.47 ? CAI Y01 704 A 1 HETATM 21 C CAZ Y01 . . . G 6 1.623 -2.72 50.354 1 102.72 ? CAZ Y01 704 A 1 HETATM 22 C CAV Y01 . . . G 6 0.624 -2.987 51.673 1 103.74 ? CAV Y01 704 A 1 HETATM 23 C CBH Y01 . . . G 6 1.608 -3.589 49.344 1 100.91 ? CBH Y01 704 A 1 HETATM 24 C CAD Y01 . . . G 6 0.205 -3.537 48.657 1 100.29 ? CAD Y01 704 A 1 HETATM 25 C CAT Y01 . . . G 6 1.844 -5.003 49.903 1 99.24 ? CAT Y01 704 A 1 HETATM 26 C CAR Y01 . . . G 6 0.808 -5.366 50.875 1 105.12 ? CAR Y01 704 A 1 HETATM 27 C CBC Y01 . . . G 6 0.946 -4.521 52.083 1 109.59 ? CBC Y01 704 A 1 HETATM 28 O OAW Y01 . . . G 6 0.083 -4.954 53.059 1 113.99 ? OAW Y01 704 A 1 HETATM 29 C CAY Y01 . . . G 6 0.691 -5.841 53.98 1 115.64 ? CAY Y01 704 A 1 HETATM 30 O OAG Y01 . . . G 6 1.716 -5.539 54.504 1 114.51 ? OAG Y01 704 A 1 HETATM 31 C CAM Y01 . . . G 6 0.03 -7.189 54.291 1 113.52 ? CAM Y01 704 A 1 HETATM 32 C CAL Y01 . . . G 6 -1.298 -6.953 55.052 1 109.55 ? CAL Y01 704 A 1 HETATM 33 C CAX Y01 . . . G 6 -1.786 -8.304 55.661 1 113.5 ? CAX Y01 704 A 1 HETATM 34 O OAH Y01 . . . G 6 -2.505 -9.078 54.974 1 107.4 -1 OAH Y01 704 A 1 HETATM 35 O OAF Y01 . . . G 6 -1.445 -8.622 56.862 1 105.6 ? OAF Y01 704 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #