data_7WGD # _model_server_result.job_id 8SJ5nmd7J5PoVZlkBKQqjw _model_server_result.datetime_utc '2024-11-08 09:43:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wgd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":705}' # _entry.id 7WGD # _exptl.entry_id 7WGD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WGD _cell.length_a 96.388 _cell.length_b 140.709 _cell.length_c 168.021 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WGD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 124 A CYS 148 1_555 A SG CYS 133 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 C SG CYS 146 H CYS 146 1_555 C SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A O GLY 18 A GLY 42 1_555 E NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc2 A O ALA 20 A ALA 44 1_555 D NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? metalc ? metalc3 A O VAL 21 A VAL 45 1_555 E NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc4 A OD1 ASN 25 A ASN 49 1_555 D NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc5 A O SER 255 A SER 320 1_555 D NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc6 A OG SER 255 A SER 320 1_555 D NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? metalc ? metalc7 A O LEU 352 A LEU 417 1_555 E NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc8 A OD1 ASP 355 A ASP 420 1_555 E NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc9 A OG SER 356 A SER 421 1_555 E NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 7WGD _atom_sites.fract_transf_matrix[1][1] 0.010375 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007107 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005952 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NA A 1 701 1 NA NA . E 4 NA A 1 702 2 NA NA . F 5 CL A 1 703 3 CL CL . G 6 Y01 A 1 704 1 Y01 Y01 . H 7 CLR A 1 705 1 CLR CLR . I 8 HOH A 1 801 8 HOH HOH . I 8 HOH A 2 802 10 HOH HOH . I 8 HOH A 3 803 2 HOH HOH . I 8 HOH A 4 804 14 HOH HOH . I 8 HOH A 5 805 16 HOH HOH . I 8 HOH A 6 806 13 HOH HOH . I 8 HOH A 7 807 9 HOH HOH . I 8 HOH A 8 808 17 HOH HOH . I 8 HOH A 9 809 7 HOH HOH . I 8 HOH A 10 810 11 HOH HOH . I 8 HOH A 11 811 1 HOH HOH . I 8 HOH A 12 812 5 HOH HOH . I 8 HOH A 13 813 15 HOH HOH . I 8 HOH A 14 814 3 HOH HOH . I 8 HOH A 15 815 6 HOH HOH . I 8 HOH A 16 816 4 HOH HOH . J 8 HOH L 1 301 20 HOH HOH . J 8 HOH L 2 302 21 HOH HOH . J 8 HOH L 3 303 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . H 7 6.869 -17.711 34.314 1 87.52 ? C1 CLR 705 A 1 HETATM 2 C C2 CLR . . . H 7 5.776 -18.755 34.939 1 87.47 ? C2 CLR 705 A 1 HETATM 3 C C3 CLR . . . H 7 4.879 -17.946 35.962 1 89.82 ? C3 CLR 705 A 1 HETATM 4 C C4 CLR . . . H 7 4.096 -16.914 35.191 1 94.61 ? C4 CLR 705 A 1 HETATM 5 C C5 CLR . . . H 7 5.047 -15.929 34.658 1 91.5 ? C5 CLR 705 A 1 HETATM 6 C C6 CLR . . . H 7 4.826 -14.767 34.928 1 92.18 ? C6 CLR 705 A 1 HETATM 7 C C7 CLR . . . H 7 5.553 -13.644 34.546 1 90.41 ? C7 CLR 705 A 1 HETATM 8 C C8 CLR . . . H 7 6.562 -13.909 33.473 1 81.68 ? C8 CLR 705 A 1 HETATM 9 C C9 CLR . . . H 7 7.209 -15.327 33.754 1 83.92 ? C9 CLR 705 A 1 HETATM 10 C C10 CLR . . . H 7 6.161 -16.377 33.792 1 91.24 ? C10 CLR 705 A 1 HETATM 11 C C11 CLR . . . H 7 8.308 -15.596 32.518 1 83.95 ? C11 CLR 705 A 1 HETATM 12 C C12 CLR . . . H 7 9.351 -14.254 32.476 1 81.77 ? C12 CLR 705 A 1 HETATM 13 C C13 CLR . . . H 7 8.61 -13.056 32.418 1 82.46 ? C13 CLR 705 A 1 HETATM 14 C C14 CLR . . . H 7 7.659 -12.96 33.547 1 80.18 ? C14 CLR 705 A 1 HETATM 15 C C15 CLR . . . H 7 7.172 -11.442 33.546 1 83.39 ? C15 CLR 705 A 1 HETATM 16 C C16 CLR . . . H 7 8.637 -10.702 33.205 1 83.14 ? C16 CLR 705 A 1 HETATM 17 C C17 CLR . . . H 7 9.538 -11.801 32.627 1 80.47 ? C17 CLR 705 A 1 HETATM 18 C C18 CLR . . . H 7 7.853 -12.951 31.09 1 81.71 ? C18 CLR 705 A 1 HETATM 19 C C19 CLR . . . H 7 5.605 -16.627 32.352 1 92.87 ? C19 CLR 705 A 1 HETATM 20 C C20 CLR . . . H 7 10.221 -11.24 31.374 1 83.11 ? C20 CLR 705 A 1 HETATM 21 C C21 CLR . . . H 7 11.376 -12.111 30.837 1 85.28 ? C21 CLR 705 A 1 HETATM 22 C C22 CLR . . . H 7 10.838 -9.898 31.747 1 78.73 ? C22 CLR 705 A 1 HETATM 23 C C23 CLR . . . H 7 11.285 -9.174 30.47 1 81.77 ? C23 CLR 705 A 1 HETATM 24 C C24 CLR . . . H 7 12.729 -8.613 30.617 1 67.6 ? C24 CLR 705 A 1 HETATM 25 C C25 CLR . . . H 7 13.123 -7.952 29.273 1 82.55 ? C25 CLR 705 A 1 HETATM 26 C C26 CLR . . . H 7 11.902 -7.128 28.732 1 87.85 ? C26 CLR 705 A 1 HETATM 27 C C27 CLR . . . H 7 14.317 -6.992 29.48 1 77.47 ? C27 CLR 705 A 1 HETATM 28 O O1 CLR . . . H 7 3.98 -18.788 36.581 1 94.91 ? O1 CLR 705 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 28 #