data_7WGN # _model_server_result.job_id npANVD74l6MEqUnvK3QiHg _model_server_result.datetime_utc '2024-11-22 11:05:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wgn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 7WGN # _exptl.entry_id 7WGN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WGN _cell.length_a 37.772 _cell.length_b 92.662 _cell.length_c 96.76 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WGN _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 7WGN _atom_sites.fract_transf_matrix[1][1] 0.026475 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010792 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010335 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 P7F A 1 501 1 P7F P7F . C 3 BOG A 1 502 1 BOG BOG . D 4 HOH A 1 601 56 HOH HOH . D 4 HOH A 2 602 34 HOH HOH . D 4 HOH A 3 603 69 HOH HOH . D 4 HOH A 4 604 36 HOH HOH . D 4 HOH A 5 605 54 HOH HOH . D 4 HOH A 6 606 61 HOH HOH . D 4 HOH A 7 607 2 HOH HOH . D 4 HOH A 8 608 48 HOH HOH . D 4 HOH A 9 609 33 HOH HOH . D 4 HOH A 10 610 62 HOH HOH . D 4 HOH A 11 611 3 HOH HOH . D 4 HOH A 12 612 31 HOH HOH . D 4 HOH A 13 613 44 HOH HOH . D 4 HOH A 14 614 19 HOH HOH . D 4 HOH A 15 615 55 HOH HOH . D 4 HOH A 16 616 52 HOH HOH . D 4 HOH A 17 617 53 HOH HOH . D 4 HOH A 18 618 66 HOH HOH . D 4 HOH A 19 619 64 HOH HOH . D 4 HOH A 20 620 21 HOH HOH . D 4 HOH A 21 621 43 HOH HOH . D 4 HOH A 22 622 41 HOH HOH . D 4 HOH A 23 623 8 HOH HOH . D 4 HOH A 24 624 57 HOH HOH . D 4 HOH A 25 625 12 HOH HOH . D 4 HOH A 26 626 63 HOH HOH . D 4 HOH A 27 627 22 HOH HOH . D 4 HOH A 28 628 35 HOH HOH . D 4 HOH A 29 629 14 HOH HOH . D 4 HOH A 30 630 4 HOH HOH . D 4 HOH A 31 631 58 HOH HOH . D 4 HOH A 32 632 32 HOH HOH . D 4 HOH A 33 633 11 HOH HOH . D 4 HOH A 34 634 9 HOH HOH . D 4 HOH A 35 635 38 HOH HOH . D 4 HOH A 36 636 28 HOH HOH . D 4 HOH A 37 637 65 HOH HOH . D 4 HOH A 38 638 67 HOH HOH . D 4 HOH A 39 639 15 HOH HOH . D 4 HOH A 40 640 25 HOH HOH . D 4 HOH A 41 641 20 HOH HOH . D 4 HOH A 42 642 68 HOH HOH . D 4 HOH A 43 643 60 HOH HOH . D 4 HOH A 44 644 39 HOH HOH . D 4 HOH A 45 645 45 HOH HOH . D 4 HOH A 46 646 49 HOH HOH . D 4 HOH A 47 647 47 HOH HOH . D 4 HOH A 48 648 30 HOH HOH . D 4 HOH A 49 649 24 HOH HOH . D 4 HOH A 50 650 59 HOH HOH . D 4 HOH A 51 651 6 HOH HOH . D 4 HOH A 52 652 42 HOH HOH . D 4 HOH A 53 653 16 HOH HOH . D 4 HOH A 54 654 23 HOH HOH . D 4 HOH A 55 655 5 HOH HOH . D 4 HOH A 56 656 27 HOH HOH . D 4 HOH A 57 657 50 HOH HOH . D 4 HOH A 58 658 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . C 3 0.009 -40.999 18.464 1 39.72 ? C1 BOG 502 A 1 HETATM 2 O O1 BOG . . . C 3 0.076 -42.237 19.044 1 48.93 ? O1 BOG 502 A 1 HETATM 3 C C2 BOG . . . C 3 -1.199 -40.291 19.061 1 40.02 ? C2 BOG 502 A 1 HETATM 4 O O2 BOG . . . C 3 -2.394 -40.996 18.669 1 46.6 ? O2 BOG 502 A 1 HETATM 5 C C3 BOG . . . C 3 -1.271 -38.878 18.612 1 41.56 ? C3 BOG 502 A 1 HETATM 6 O O3 BOG . . . C 3 -2.411 -38.218 19.221 1 64.79 ? O3 BOG 502 A 1 HETATM 7 C C4 BOG . . . C 3 0.004 -38.18 18.972 1 38.41 ? C4 BOG 502 A 1 HETATM 8 O O4 BOG . . . C 3 -0.057 -36.787 18.643 1 36.96 ? O4 BOG 502 A 1 HETATM 9 C C5 BOG . . . C 3 1.155 -38.848 18.226 1 34.54 ? C5 BOG 502 A 1 HETATM 10 O O5 BOG . . . C 3 1.298 -40.246 18.671 1 38.8 ? O5 BOG 502 A 1 HETATM 11 C C6 BOG . . . C 3 2.42 -38.077 18.443 1 35.79 ? C6 BOG 502 A 1 HETATM 12 O O6 BOG . . . C 3 2.153 -36.707 18.303 1 34.83 ? O6 BOG 502 A 1 HETATM 13 C C1' BOG . . . C 3 0.229 -43.343 18.188 1 44.62 ? C1' BOG 502 A 1 HETATM 14 C C2' BOG . . . C 3 -0.963 -43.491 17.23 1 45.26 ? C2' BOG 502 A 1 HETATM 15 C C3' BOG . . . C 3 -0.809 -44.814 16.479 1 52.74 ? C3' BOG 502 A 1 HETATM 16 C C4' BOG . . . C 3 -1.686 -44.943 15.231 1 34.96 ? C4' BOG 502 A 1 HETATM 17 C C5' BOG . . . C 3 -2.343 -43.643 14.772 1 35.24 ? C5' BOG 502 A 1 HETATM 18 C C6' BOG . . . C 3 -3.184 -43.931 13.54 1 36.64 ? C6' BOG 502 A 1 HETATM 19 C C7' BOG . . . C 3 -4.502 -44.571 13.97 1 36.22 ? C7' BOG 502 A 1 HETATM 20 C C8' BOG . . . C 3 -4.891 -45.633 12.942 1 24.21 ? C8' BOG 502 A 1 HETATM 21 H H1 BOG . . . C 3 -0.136 -41.106 17.51 1 47.66 ? H1 BOG 502 A 1 HETATM 22 H H2 BOG . . . C 3 -1.123 -40.307 20.028 1 48.03 ? H2 BOG 502 A 1 HETATM 23 H HO2 BOG . . . C 3 -2.845 -40.514 18.134 1 55.92 ? HO2 BOG 502 A 1 HETATM 24 H H3 BOG . . . C 3 -1.373 -38.863 17.648 1 49.87 ? H3 BOG 502 A 1 HETATM 25 H HO3 BOG . . . C 3 -3.083 -38.279 18.703 1 77.75 ? HO3 BOG 502 A 1 HETATM 26 H H4 BOG . . . C 3 0.153 -38.275 19.926 1 46.1 ? H4 BOG 502 A 1 HETATM 27 H HO4 BOG . . . C 3 -0.835 -36.49 18.812 1 44.36 ? HO4 BOG 502 A 1 HETATM 28 H H5 BOG . . . C 3 0.947 -38.848 17.278 1 41.45 ? H5 BOG 502 A 1 HETATM 29 H H61 BOG . . . C 3 2.756 -38.252 19.336 1 42.95 ? H61 BOG 502 A 1 HETATM 30 H H62 BOG . . . C 3 3.081 -38.348 17.788 1 42.95 ? H62 BOG 502 A 1 HETATM 31 H HO6 BOG . . . C 3 2.803 -36.331 17.905 1 41.8 ? HO6 BOG 502 A 1 HETATM 32 H "H1'1" BOG . . . C 3 1.04 -43.231 17.668 1 53.54 ? "H1'1" BOG 502 A 1 HETATM 33 H "H1'2" BOG . . . C 3 0.305 -44.148 18.723 1 53.54 ? "H1'2" BOG 502 A 1 HETATM 34 H "H2'1" BOG . . . C 3 -1.791 -43.496 17.735 1 54.32 ? "H2'1" BOG 502 A 1 HETATM 35 H "H2'2" BOG . . . C 3 -0.969 -42.755 16.598 1 54.32 ? "H2'2" BOG 502 A 1 HETATM 36 H "H3'1" BOG . . . C 3 0.119 -44.909 16.213 1 63.29 ? "H3'1" BOG 502 A 1 HETATM 37 H "H3'2" BOG . . . C 3 -1.031 -45.538 17.086 1 63.29 ? "H3'2" BOG 502 A 1 HETATM 38 H "H4'1" BOG . . . C 3 -1.137 -45.281 14.505 1 41.95 ? "H4'1" BOG 502 A 1 HETATM 39 H "H4'2" BOG . . . C 3 -2.385 -45.591 15.414 1 41.95 ? "H4'2" BOG 502 A 1 HETATM 40 H "H5'1" BOG . . . C 3 -1.659 -42.991 14.554 1 42.29 ? "H5'1" BOG 502 A 1 HETATM 41 H "H5'2" BOG . . . C 3 -2.909 -43.297 15.48 1 42.29 ? "H5'2" BOG 502 A 1 HETATM 42 H "H6'1" BOG . . . C 3 -2.705 -44.538 12.955 1 43.97 ? "H6'1" BOG 502 A 1 HETATM 43 H "H6'2" BOG . . . C 3 -3.365 -43.102 13.07 1 43.97 ? "H6'2" BOG 502 A 1 HETATM 44 H "H7'1" BOG . . . C 3 -5.194 -43.893 14.015 1 43.47 ? "H7'1" BOG 502 A 1 HETATM 45 H "H7'2" BOG . . . C 3 -4.395 -44.984 14.841 1 43.47 ? "H7'2" BOG 502 A 1 HETATM 46 H "H8'1" BOG . . . C 3 -4.215 -46.328 12.924 1 29.05 ? "H8'1" BOG 502 A 1 HETATM 47 H "H8'2" BOG . . . C 3 -4.958 -45.224 12.065 1 29.05 ? "H8'2" BOG 502 A 1 HETATM 48 H "H8'3" BOG . . . C 3 -5.747 -46.02 13.184 1 29.05 ? "H8'3" BOG 502 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #