data_7WH9 # _model_server_result.job_id DsrHPm9FnqCqUoV_e-LWIg _model_server_result.datetime_utc '2024-11-29 04:24:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wh9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 7WH9 # _exptl.entry_id 7WH9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 270.237 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-METHYL-1,6,8-TRIHYDROXYANTHRAQUINONE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7WH9 _cell.length_a 162.093 _cell.length_b 162.093 _cell.length_c 130.219 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WH9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -43.406333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 H N N # _chem_comp.formula 'C15 H10 O5' _chem_comp.formula_weight 270.237 _chem_comp.id EMO _chem_comp.mon_nstd_flag . _chem_comp.name 3-METHYL-1,6,8-TRIHYDROXYANTHRAQUINONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms EMODIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EMO sing 83 n n C1 C2 EMO doub 84 n y C1 C20 EMO sing 85 n y O1 HO1 EMO sing 86 n n C2 C3 EMO sing 87 n y C2 H2 EMO sing 88 n n C3 O3 EMO sing 89 n n C3 C4 EMO doub 90 n y O3 HO3 EMO sing 91 n n C4 C5 EMO sing 92 n y C4 H4 EMO sing 93 n n C5 C6 EMO sing 94 n n C5 C20 EMO doub 95 n y C6 O6 EMO doub 96 n n C6 C7 EMO sing 97 n n C7 C8 EMO doub 98 n y C7 C18 EMO sing 99 n y C8 C9 EMO sing 100 n y C8 H8 EMO sing 101 n n C9 C10 EMO sing 102 n n C9 C16 EMO doub 103 n y C10 H101 EMO sing 104 n n C10 H102 EMO sing 105 n n C10 H103 EMO sing 106 n n C16 C17 EMO sing 107 n y C16 H16 EMO sing 108 n n C17 O17 EMO sing 109 n n C17 C18 EMO doub 110 n y O17 H17 EMO sing 111 n n C18 C19 EMO sing 112 n n C19 O19 EMO doub 113 n n C19 C20 EMO sing 114 n n # _atom_sites.entry_id 7WH9 _atom_sites.fract_transf_matrix[1][1] 0.006169 _atom_sites.fract_transf_matrix[1][2] 0.003562 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007124 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007679 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 EMO A 1 601 601 EMO EMO . E 3 SAH A 1 602 701 SAH SAH . F 2 EMO B 1 601 601 EMO EMO . G 3 SAH B 1 602 701 SAH SAH . H 2 EMO C 1 601 601 EMO EMO . I 3 SAH C 1 602 701 SAH SAH . J 4 HOH A 1 701 89 HOH HOH . J 4 HOH A 2 702 41 HOH HOH . J 4 HOH A 3 703 69 HOH HOH . J 4 HOH A 4 704 44 HOH HOH . J 4 HOH A 5 705 88 HOH HOH . J 4 HOH A 6 706 4 HOH HOH . J 4 HOH A 7 707 72 HOH HOH . J 4 HOH A 8 708 96 HOH HOH . J 4 HOH A 9 709 107 HOH HOH . J 4 HOH A 10 710 83 HOH HOH . J 4 HOH A 11 711 35 HOH HOH . J 4 HOH A 12 712 1 HOH HOH . J 4 HOH A 13 713 6 HOH HOH . J 4 HOH A 14 714 97 HOH HOH . J 4 HOH A 15 715 94 HOH HOH . J 4 HOH A 16 716 21 HOH HOH . J 4 HOH A 17 717 53 HOH HOH . J 4 HOH A 18 718 60 HOH HOH . J 4 HOH A 19 719 76 HOH HOH . J 4 HOH A 20 720 120 HOH HOH . J 4 HOH A 21 721 57 HOH HOH . J 4 HOH A 22 722 55 HOH HOH . J 4 HOH A 23 723 47 HOH HOH . J 4 HOH A 24 724 61 HOH HOH . J 4 HOH A 25 725 12 HOH HOH . J 4 HOH A 26 726 70 HOH HOH . J 4 HOH A 27 727 56 HOH HOH . J 4 HOH A 28 728 40 HOH HOH . J 4 HOH A 29 729 124 HOH HOH . J 4 HOH A 30 730 50 HOH HOH . J 4 HOH A 31 731 11 HOH HOH . J 4 HOH A 32 732 78 HOH HOH . J 4 HOH A 33 733 85 HOH HOH . J 4 HOH A 34 734 112 HOH HOH . J 4 HOH A 35 735 5 HOH HOH . J 4 HOH A 36 736 68 HOH HOH . J 4 HOH A 37 737 126 HOH HOH . J 4 HOH A 38 738 98 HOH HOH . J 4 HOH A 39 739 58 HOH HOH . J 4 HOH A 40 740 115 HOH HOH . J 4 HOH A 41 741 33 HOH HOH . J 4 HOH A 42 742 10 HOH HOH . J 4 HOH A 43 743 26 HOH HOH . J 4 HOH A 44 744 106 HOH HOH . J 4 HOH A 45 745 123 HOH HOH . J 4 HOH A 46 746 45 HOH HOH . J 4 HOH A 47 747 66 HOH HOH . J 4 HOH A 48 748 93 HOH HOH . J 4 HOH A 49 749 48 HOH HOH . J 4 HOH A 50 750 52 HOH HOH . J 4 HOH A 51 751 86 HOH HOH . J 4 HOH A 52 752 23 HOH HOH . J 4 HOH A 53 753 81 HOH HOH . J 4 HOH A 54 754 20 HOH HOH . J 4 HOH A 55 755 42 HOH HOH . J 4 HOH A 56 756 2 HOH HOH . J 4 HOH A 57 757 111 HOH HOH . J 4 HOH A 58 758 74 HOH HOH . J 4 HOH A 59 759 91 HOH HOH . J 4 HOH A 60 760 43 HOH HOH . J 4 HOH A 61 761 37 HOH HOH . J 4 HOH A 62 762 30 HOH HOH . J 4 HOH A 63 763 73 HOH HOH . J 4 HOH A 64 764 14 HOH HOH . J 4 HOH A 65 765 31 HOH HOH . J 4 HOH A 66 766 27 HOH HOH . J 4 HOH A 67 767 118 HOH HOH . J 4 HOH A 68 768 125 HOH HOH . J 4 HOH A 69 769 15 HOH HOH . J 4 HOH A 70 770 67 HOH HOH . J 4 HOH A 71 771 25 HOH HOH . J 4 HOH A 72 772 105 HOH HOH . J 4 HOH A 73 773 99 HOH HOH . J 4 HOH A 74 774 121 HOH HOH . J 4 HOH A 75 775 95 HOH HOH . J 4 HOH A 76 776 7 HOH HOH . J 4 HOH A 77 777 82 HOH HOH . J 4 HOH A 78 778 101 HOH HOH . J 4 HOH A 79 779 71 HOH HOH . J 4 HOH A 80 780 109 HOH HOH . J 4 HOH A 81 781 46 HOH HOH . J 4 HOH A 82 782 100 HOH HOH . J 4 HOH A 83 783 19 HOH HOH . J 4 HOH A 84 784 3 HOH HOH . J 4 HOH A 85 785 8 HOH HOH . J 4 HOH A 86 786 63 HOH HOH . J 4 HOH A 87 787 13 HOH HOH . J 4 HOH A 88 788 77 HOH HOH . J 4 HOH A 89 789 129 HOH HOH . J 4 HOH A 90 790 87 HOH HOH . J 4 HOH A 91 791 108 HOH HOH . J 4 HOH A 92 792 22 HOH HOH . J 4 HOH A 93 793 75 HOH HOH . J 4 HOH A 94 794 32 HOH HOH . J 4 HOH A 95 795 117 HOH HOH . J 4 HOH A 96 796 24 HOH HOH . J 4 HOH A 97 797 92 HOH HOH . J 4 HOH A 98 798 38 HOH HOH . J 4 HOH A 99 799 122 HOH HOH . J 4 HOH A 100 800 84 HOH HOH . J 4 HOH A 101 801 18 HOH HOH . J 4 HOH A 102 802 119 HOH HOH . J 4 HOH A 103 803 90 HOH HOH . J 4 HOH A 104 804 36 HOH HOH . J 4 HOH A 105 805 79 HOH HOH . K 4 HOH B 1 701 16 HOH HOH . K 4 HOH B 2 702 127 HOH HOH . K 4 HOH B 3 703 64 HOH HOH . K 4 HOH B 4 704 113 HOH HOH . K 4 HOH B 5 705 114 HOH HOH . K 4 HOH B 6 706 51 HOH HOH . K 4 HOH B 7 707 62 HOH HOH . K 4 HOH B 8 708 104 HOH HOH . K 4 HOH B 9 709 28 HOH HOH . K 4 HOH B 10 710 65 HOH HOH . K 4 HOH B 11 711 17 HOH HOH . K 4 HOH B 12 712 80 HOH HOH . L 4 HOH C 1 701 54 HOH HOH . L 4 HOH C 2 702 128 HOH HOH . L 4 HOH C 3 703 34 HOH HOH . L 4 HOH C 4 704 116 HOH HOH . L 4 HOH C 5 705 59 HOH HOH . L 4 HOH C 6 706 39 HOH HOH . L 4 HOH C 7 707 9 HOH HOH . L 4 HOH C 8 708 110 HOH HOH . L 4 HOH C 9 709 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EMO . . . D 2 19.538 17.88 -22.771 1 25.52 ? C1 EMO 601 A 1 HETATM 2 O O1 EMO . . . D 2 19.089 19.076 -23.344 1 17.42 ? O1 EMO 601 A 1 HETATM 3 C C2 EMO . . . D 2 20.88 17.824 -22.422 1 27.1 ? C2 EMO 601 A 1 HETATM 4 C C3 EMO . . . D 2 21.395 16.667 -21.847 1 27.35 ? C3 EMO 601 A 1 HETATM 5 O O3 EMO . . . D 2 22.751 16.619 -21.499 1 25.06 ? O3 EMO 601 A 1 HETATM 6 C C4 EMO . . . D 2 20.572 15.572 -21.622 1 30.28 ? C4 EMO 601 A 1 HETATM 7 C C5 EMO . . . D 2 19.217 15.631 -21.976 1 31.92 ? C5 EMO 601 A 1 HETATM 8 C C6 EMO . . . D 2 18.297 14.412 -21.726 1 32.47 ? C6 EMO 601 A 1 HETATM 9 O O6 EMO . . . D 2 18.737 13.428 -21.237 1 39.62 ? O6 EMO 601 A 1 HETATM 10 C C7 EMO . . . D 2 16.801 14.479 -22.117 1 29.74 ? C7 EMO 601 A 1 HETATM 11 C C8 EMO . . . D 2 15.966 13.375 -21.891 1 28.38 ? C8 EMO 601 A 1 HETATM 12 C C9 EMO . . . D 2 14.625 13.437 -22.242 1 25.87 ? C9 EMO 601 A 1 HETATM 13 C C10 EMO . . . D 2 13.674 12.262 -22.017 1 25.49 ? C10 EMO 601 A 1 HETATM 14 C C16 EMO . . . D 2 14.107 14.593 -22.817 1 26.68 ? C16 EMO 601 A 1 HETATM 15 C C17 EMO . . . D 2 14.934 15.685 -23.04 1 29.41 ? C17 EMO 601 A 1 HETATM 16 O O17 EMO . . . D 2 14.346 16.815 -23.621 1 33.37 ? O17 EMO 601 A 1 HETATM 17 C C18 EMO . . . D 2 16.288 15.626 -22.687 1 29.13 ? C18 EMO 601 A 1 HETATM 18 C C19 EMO . . . D 2 17.208 16.845 -22.936 1 32.56 ? C19 EMO 601 A 1 HETATM 19 O O19 EMO . . . D 2 16.768 17.83 -23.426 1 33.2 ? O19 EMO 601 A 1 HETATM 20 C C20 EMO . . . D 2 18.703 16.778 -22.546 1 33.13 ? C20 EMO 601 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #