data_7WH9 # _model_server_result.job_id JADbrB8fg9q8-lm--VWl4w _model_server_result.datetime_utc '2024-10-12 17:23:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wh9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":602}' # _entry.id 7WH9 # _exptl.entry_id 7WH9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7WH9 _cell.length_a 162.093 _cell.length_b 162.093 _cell.length_c 130.219 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WH9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -43.406333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 309 n n N HN1 SAH sing 310 n n N HN2 SAH sing 311 n n CA CB SAH sing 312 n n CA C SAH sing 313 n n CA HA SAH sing 314 n n CB CG SAH sing 315 n n CB HB1 SAH sing 316 n n CB HB2 SAH sing 317 n n CG SD SAH sing 318 n n CG HG1 SAH sing 319 n n CG HG2 SAH sing 320 n n SD C5' SAH sing 321 n n C O SAH doub 322 n n C OXT SAH sing 323 n n OXT HXT SAH sing 324 n n C5' C4' SAH sing 325 n n C5' "H5'1" SAH sing 326 n n C5' "H5'2" SAH sing 327 n n C4' O4' SAH sing 328 n n C4' C3' SAH sing 329 n n C4' H4' SAH sing 330 n n O4' C1' SAH sing 331 n n C3' O3' SAH sing 332 n n C3' C2' SAH sing 333 n n C3' H3' SAH sing 334 n n O3' HO3' SAH sing 335 n n C2' O2' SAH sing 336 n n C2' C1' SAH sing 337 n n C2' H2' SAH sing 338 n n O2' HO2' SAH sing 339 n n C1' N9 SAH sing 340 n n C1' H1' SAH sing 341 n n N9 C8 SAH sing 342 n y N9 C4 SAH sing 343 n y C8 N7 SAH doub 344 n y C8 H8 SAH sing 345 n n N7 C5 SAH sing 346 n y C5 C6 SAH sing 347 n y C5 C4 SAH doub 348 n y C6 N6 SAH sing 349 n n C6 N1 SAH doub 350 n y N6 HN61 SAH sing 351 n n N6 HN62 SAH sing 352 n n N1 C2 SAH sing 353 n y C2 N3 SAH doub 354 n y C2 H2 SAH sing 355 n n N3 C4 SAH sing 356 n y # _atom_sites.entry_id 7WH9 _atom_sites.fract_transf_matrix[1][1] 0.006169 _atom_sites.fract_transf_matrix[1][2] 0.003562 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007124 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007679 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 EMO A 1 601 601 EMO EMO . E 3 SAH A 1 602 701 SAH SAH . F 2 EMO B 1 601 601 EMO EMO . G 3 SAH B 1 602 701 SAH SAH . H 2 EMO C 1 601 601 EMO EMO . I 3 SAH C 1 602 701 SAH SAH . J 4 HOH A 1 701 89 HOH HOH . J 4 HOH A 2 702 41 HOH HOH . J 4 HOH A 3 703 69 HOH HOH . J 4 HOH A 4 704 44 HOH HOH . J 4 HOH A 5 705 88 HOH HOH . J 4 HOH A 6 706 4 HOH HOH . J 4 HOH A 7 707 72 HOH HOH . J 4 HOH A 8 708 96 HOH HOH . J 4 HOH A 9 709 107 HOH HOH . J 4 HOH A 10 710 83 HOH HOH . J 4 HOH A 11 711 35 HOH HOH . J 4 HOH A 12 712 1 HOH HOH . J 4 HOH A 13 713 6 HOH HOH . J 4 HOH A 14 714 97 HOH HOH . J 4 HOH A 15 715 94 HOH HOH . J 4 HOH A 16 716 21 HOH HOH . J 4 HOH A 17 717 53 HOH HOH . J 4 HOH A 18 718 60 HOH HOH . J 4 HOH A 19 719 76 HOH HOH . J 4 HOH A 20 720 120 HOH HOH . J 4 HOH A 21 721 57 HOH HOH . J 4 HOH A 22 722 55 HOH HOH . J 4 HOH A 23 723 47 HOH HOH . J 4 HOH A 24 724 61 HOH HOH . J 4 HOH A 25 725 12 HOH HOH . J 4 HOH A 26 726 70 HOH HOH . J 4 HOH A 27 727 56 HOH HOH . J 4 HOH A 28 728 40 HOH HOH . J 4 HOH A 29 729 124 HOH HOH . J 4 HOH A 30 730 50 HOH HOH . J 4 HOH A 31 731 11 HOH HOH . J 4 HOH A 32 732 78 HOH HOH . J 4 HOH A 33 733 85 HOH HOH . J 4 HOH A 34 734 112 HOH HOH . J 4 HOH A 35 735 5 HOH HOH . J 4 HOH A 36 736 68 HOH HOH . J 4 HOH A 37 737 126 HOH HOH . J 4 HOH A 38 738 98 HOH HOH . J 4 HOH A 39 739 58 HOH HOH . J 4 HOH A 40 740 115 HOH HOH . J 4 HOH A 41 741 33 HOH HOH . J 4 HOH A 42 742 10 HOH HOH . J 4 HOH A 43 743 26 HOH HOH . J 4 HOH A 44 744 106 HOH HOH . J 4 HOH A 45 745 123 HOH HOH . J 4 HOH A 46 746 45 HOH HOH . J 4 HOH A 47 747 66 HOH HOH . J 4 HOH A 48 748 93 HOH HOH . J 4 HOH A 49 749 48 HOH HOH . J 4 HOH A 50 750 52 HOH HOH . J 4 HOH A 51 751 86 HOH HOH . J 4 HOH A 52 752 23 HOH HOH . J 4 HOH A 53 753 81 HOH HOH . J 4 HOH A 54 754 20 HOH HOH . J 4 HOH A 55 755 42 HOH HOH . J 4 HOH A 56 756 2 HOH HOH . J 4 HOH A 57 757 111 HOH HOH . J 4 HOH A 58 758 74 HOH HOH . J 4 HOH A 59 759 91 HOH HOH . J 4 HOH A 60 760 43 HOH HOH . J 4 HOH A 61 761 37 HOH HOH . J 4 HOH A 62 762 30 HOH HOH . J 4 HOH A 63 763 73 HOH HOH . J 4 HOH A 64 764 14 HOH HOH . J 4 HOH A 65 765 31 HOH HOH . J 4 HOH A 66 766 27 HOH HOH . J 4 HOH A 67 767 118 HOH HOH . J 4 HOH A 68 768 125 HOH HOH . J 4 HOH A 69 769 15 HOH HOH . J 4 HOH A 70 770 67 HOH HOH . J 4 HOH A 71 771 25 HOH HOH . J 4 HOH A 72 772 105 HOH HOH . J 4 HOH A 73 773 99 HOH HOH . J 4 HOH A 74 774 121 HOH HOH . J 4 HOH A 75 775 95 HOH HOH . J 4 HOH A 76 776 7 HOH HOH . J 4 HOH A 77 777 82 HOH HOH . J 4 HOH A 78 778 101 HOH HOH . J 4 HOH A 79 779 71 HOH HOH . J 4 HOH A 80 780 109 HOH HOH . J 4 HOH A 81 781 46 HOH HOH . J 4 HOH A 82 782 100 HOH HOH . J 4 HOH A 83 783 19 HOH HOH . J 4 HOH A 84 784 3 HOH HOH . J 4 HOH A 85 785 8 HOH HOH . J 4 HOH A 86 786 63 HOH HOH . J 4 HOH A 87 787 13 HOH HOH . J 4 HOH A 88 788 77 HOH HOH . J 4 HOH A 89 789 129 HOH HOH . J 4 HOH A 90 790 87 HOH HOH . J 4 HOH A 91 791 108 HOH HOH . J 4 HOH A 92 792 22 HOH HOH . J 4 HOH A 93 793 75 HOH HOH . J 4 HOH A 94 794 32 HOH HOH . J 4 HOH A 95 795 117 HOH HOH . J 4 HOH A 96 796 24 HOH HOH . J 4 HOH A 97 797 92 HOH HOH . J 4 HOH A 98 798 38 HOH HOH . J 4 HOH A 99 799 122 HOH HOH . J 4 HOH A 100 800 84 HOH HOH . J 4 HOH A 101 801 18 HOH HOH . J 4 HOH A 102 802 119 HOH HOH . J 4 HOH A 103 803 90 HOH HOH . J 4 HOH A 104 804 36 HOH HOH . J 4 HOH A 105 805 79 HOH HOH . K 4 HOH B 1 701 16 HOH HOH . K 4 HOH B 2 702 127 HOH HOH . K 4 HOH B 3 703 64 HOH HOH . K 4 HOH B 4 704 113 HOH HOH . K 4 HOH B 5 705 114 HOH HOH . K 4 HOH B 6 706 51 HOH HOH . K 4 HOH B 7 707 62 HOH HOH . K 4 HOH B 8 708 104 HOH HOH . K 4 HOH B 9 709 28 HOH HOH . K 4 HOH B 10 710 65 HOH HOH . K 4 HOH B 11 711 17 HOH HOH . K 4 HOH B 12 712 80 HOH HOH . L 4 HOH C 1 701 54 HOH HOH . L 4 HOH C 2 702 128 HOH HOH . L 4 HOH C 3 703 34 HOH HOH . L 4 HOH C 4 704 116 HOH HOH . L 4 HOH C 5 705 59 HOH HOH . L 4 HOH C 6 706 39 HOH HOH . L 4 HOH C 7 707 9 HOH HOH . L 4 HOH C 8 708 110 HOH HOH . L 4 HOH C 9 709 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . I 3 94.743 32.999 -4.882 1 66.55 ? N SAH 602 C 1 HETATM 2 C CA SAH . . . I 3 95.565 31.871 -4.446 1 65.63 ? CA SAH 602 C 1 HETATM 3 C CB SAH . . . I 3 95.606 31.728 -2.908 1 59.13 ? CB SAH 602 C 1 HETATM 4 C CG SAH . . . I 3 94.291 32.212 -2.328 1 54.8 ? CG SAH 602 C 1 HETATM 5 S SD SAH . . . I 3 94.226 31.793 -0.556 1 53.58 ? SD SAH 602 C 1 HETATM 6 C C SAH . . . I 3 95.014 30.506 -5.021 1 69.91 ? C SAH 602 C 1 HETATM 7 O O SAH . . . I 3 95.821 29.563 -5.152 1 71.01 ? O SAH 602 C 1 HETATM 8 O OXT SAH . . . I 3 93.797 30.494 -5.298 1 72.41 ? OXT SAH 602 C 1 HETATM 9 C C5' SAH . . . I 3 94.368 33.468 0.119 1 57.7 ? C5' SAH 602 C 1 HETATM 10 C C4' SAH . . . I 3 95.731 34.071 -0.178 1 62.49 ? C4' SAH 602 C 1 HETATM 11 O O4' SAH . . . I 3 95.792 35.397 0.321 1 63.75 ? O4' SAH 602 C 1 HETATM 12 C C3' SAH . . . I 3 96.845 33.258 0.559 1 62.94 ? C3' SAH 602 C 1 HETATM 13 O O3' SAH . . . I 3 97.702 32.805 -0.438 1 63.29 ? O3' SAH 602 C 1 HETATM 14 C C2' SAH . . . I 3 97.514 34.315 1.479 1 61.9 ? C2' SAH 602 C 1 HETATM 15 O O2' SAH . . . I 3 98.9 34.245 1.46 1 61.26 ? O2' SAH 602 C 1 HETATM 16 C C1' SAH . . . I 3 97.105 35.649 0.771 1 62.58 ? C1' SAH 602 C 1 HETATM 17 N N9 SAH . . . I 3 97.038 36.772 1.703 1 61.62 ? N9 SAH 602 C 1 HETATM 18 C C8 SAH . . . I 3 96.505 36.801 3.021 1 63.88 ? C8 SAH 602 C 1 HETATM 19 N N7 SAH . . . I 3 96.613 38.013 3.588 1 63.64 ? N7 SAH 602 C 1 HETATM 20 C C5 SAH . . . I 3 97.239 38.813 2.611 1 61.16 ? C5 SAH 602 C 1 HETATM 21 C C6 SAH . . . I 3 97.624 40.178 2.606 1 61.14 ? C6 SAH 602 C 1 HETATM 22 N N6 SAH . . . I 3 97.402 40.972 3.691 1 62.29 ? N6 SAH 602 C 1 HETATM 23 N N1 SAH . . . I 3 98.231 40.716 1.493 1 60.22 ? N1 SAH 602 C 1 HETATM 24 C C2 SAH . . . I 3 98.426 39.866 0.437 1 60.25 ? C2 SAH 602 C 1 HETATM 25 N N3 SAH . . . I 3 98.113 38.555 0.302 1 59.98 ? N3 SAH 602 C 1 HETATM 26 C C4 SAH . . . I 3 97.509 38.059 1.435 1 60.29 ? C4 SAH 602 C 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #