data_7WHH # _model_server_result.job_id 0kCLnq-c0oNVb64gDjgnHA _model_server_result.datetime_utc '2024-11-21 10:27:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7whh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":903}' # _entry.id 7WHH # _exptl.entry_id 7WHH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WHH _cell.length_a 104.706 _cell.length_b 104.706 _cell.length_c 227.098 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WHH _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N ? 6 I N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 FUC NAG C1 O1 . O3 HO3 . sing 2 ? 3 3 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 B 1 NAG A 904 NAG 3 n C FUC 2 B 2 FUC A 908 FUC 3 n C NAG 3 B 3 NAG A 907 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 116 A CYS 133 1_555 A SG CYS 124 A CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf2 A SG CYS 327 A CYS 344 1_555 A SG CYS 344 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 A SG CYS 513 A CYS 530 1_555 A SG CYS 525 A CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 B SG CYS 4 E CYS 336 1_555 B SG CYS 29 E CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf5 B SG CYS 47 E CYS 379 1_555 B SG CYS 100 E CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf6 B SG CYS 59 E CYS 391 1_555 B SG CYS 193 E CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf7 B SG CYS 148 E CYS 480 1_555 B SG CYS 156 E CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? covale ? covale1 A ND2 ASN 36 A ASN 53 1_555 H C1 NAG . A NAG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 73 A ASN 90 1_555 C C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale3 A ND2 ASN 305 A ASN 322 1_555 G C1 NAG . A NAG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale4 A ND2 ASN 529 A ASN 546 1_555 F C1 NAG . A NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale5 B ND2 ASN 11 E ASN 343 1_555 I C1 NAG . E NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? covale ? covale6 C O3 NAG . B NAG 1 1_555 C C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale7 C O4 NAG . B NAG 1 1_555 C C1 NAG . B NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? metalc ? metalc1 A NE2 HIS 357 A HIS 374 1_555 D ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc2 A NE2 HIS 361 A HIS 378 1_555 D ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc3 A OE1 GLU 385 A GLU 402 1_555 D ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 260 n n C1 O1 NAG sing 261 n n C1 O5 NAG sing 262 n n C1 H1 NAG sing 263 n n C2 C3 NAG sing 264 n n C2 N2 NAG sing 265 n n C2 H2 NAG sing 266 n n C3 C4 NAG sing 267 n n C3 O3 NAG sing 268 n n C3 H3 NAG sing 269 n n C4 C5 NAG sing 270 n n C4 O4 NAG sing 271 n n C4 H4 NAG sing 272 n n C5 C6 NAG sing 273 n n C5 O5 NAG sing 274 n n C5 H5 NAG sing 275 n n C6 O6 NAG sing 276 n n C6 H61 NAG sing 277 n n C6 H62 NAG sing 278 n n C7 C8 NAG sing 279 n n C7 N2 NAG sing 280 n n C7 O7 NAG doub 281 n n C8 H81 NAG sing 282 n n C8 H82 NAG sing 283 n n C8 H83 NAG sing 284 n n N2 HN2 NAG sing 285 n n O1 HO1 NAG sing 286 n n O3 HO3 NAG sing 287 n n O4 HO4 NAG sing 288 n n O6 HO6 NAG sing 289 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7WHH _atom_sites.fract_transf_matrix[1][1] 0.009551 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009551 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004403 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN A 1 901 901 ZN ZN . E 5 CL A 1 902 902 CL CL . F 6 NAG A 1 903 903 NAG NAG . G 6 NAG A 1 904 905 NAG NAG . H 6 NAG A 1 905 906 NAG NAG . I 6 NAG E 1 601 601 NAG NAG . J 7 HOH A 1 1001 61 HOH HOH . J 7 HOH A 2 1002 26 HOH HOH . J 7 HOH A 3 1003 50 HOH HOH . J 7 HOH A 4 1004 97 HOH HOH . J 7 HOH A 5 1005 11 HOH HOH . J 7 HOH A 6 1006 123 HOH HOH . J 7 HOH A 7 1007 102 HOH HOH . J 7 HOH A 8 1008 75 HOH HOH . J 7 HOH A 9 1009 1 HOH HOH . J 7 HOH A 10 1010 55 HOH HOH . J 7 HOH A 11 1011 47 HOH HOH . J 7 HOH A 12 1012 94 HOH HOH . J 7 HOH A 13 1013 96 HOH HOH . J 7 HOH A 14 1014 9 HOH HOH . J 7 HOH A 15 1015 88 HOH HOH . J 7 HOH A 16 1016 19 HOH HOH . J 7 HOH A 17 1017 8 HOH HOH . J 7 HOH A 18 1018 126 HOH HOH . J 7 HOH A 19 1019 122 HOH HOH . J 7 HOH A 20 1020 78 HOH HOH . J 7 HOH A 21 1021 20 HOH HOH . J 7 HOH A 22 1022 7 HOH HOH . J 7 HOH A 23 1023 17 HOH HOH . J 7 HOH A 24 1024 51 HOH HOH . J 7 HOH A 25 1025 95 HOH HOH . J 7 HOH A 26 1026 46 HOH HOH . J 7 HOH A 27 1027 28 HOH HOH . J 7 HOH A 28 1028 39 HOH HOH . J 7 HOH A 29 1029 79 HOH HOH . J 7 HOH A 30 1030 91 HOH HOH . J 7 HOH A 31 1031 101 HOH HOH . J 7 HOH A 32 1032 73 HOH HOH . J 7 HOH A 33 1033 27 HOH HOH . J 7 HOH A 34 1034 6 HOH HOH . J 7 HOH A 35 1035 15 HOH HOH . J 7 HOH A 36 1036 4 HOH HOH . J 7 HOH A 37 1037 56 HOH HOH . J 7 HOH A 38 1038 29 HOH HOH . J 7 HOH A 39 1039 2 HOH HOH . J 7 HOH A 40 1040 72 HOH HOH . J 7 HOH A 41 1041 25 HOH HOH . J 7 HOH A 42 1042 76 HOH HOH . J 7 HOH A 43 1043 62 HOH HOH . J 7 HOH A 44 1044 24 HOH HOH . J 7 HOH A 45 1045 63 HOH HOH . J 7 HOH A 46 1046 125 HOH HOH . J 7 HOH A 47 1047 71 HOH HOH . J 7 HOH A 48 1048 21 HOH HOH . J 7 HOH A 49 1049 13 HOH HOH . J 7 HOH A 50 1050 120 HOH HOH . J 7 HOH A 51 1051 105 HOH HOH . J 7 HOH A 52 1052 99 HOH HOH . J 7 HOH A 53 1053 49 HOH HOH . J 7 HOH A 54 1054 108 HOH HOH . J 7 HOH A 55 1055 14 HOH HOH . J 7 HOH A 56 1056 41 HOH HOH . J 7 HOH A 57 1057 34 HOH HOH . J 7 HOH A 58 1058 116 HOH HOH . J 7 HOH A 59 1059 89 HOH HOH . J 7 HOH A 60 1060 84 HOH HOH . J 7 HOH A 61 1061 42 HOH HOH . J 7 HOH A 62 1062 131 HOH HOH . J 7 HOH A 63 1063 60 HOH HOH . J 7 HOH A 64 1064 67 HOH HOH . J 7 HOH A 65 1065 22 HOH HOH . J 7 HOH A 66 1066 104 HOH HOH . J 7 HOH A 67 1067 35 HOH HOH . J 7 HOH A 68 1068 124 HOH HOH . J 7 HOH A 69 1069 36 HOH HOH . J 7 HOH A 70 1070 86 HOH HOH . J 7 HOH A 71 1071 98 HOH HOH . J 7 HOH A 72 1072 23 HOH HOH . J 7 HOH A 73 1073 40 HOH HOH . J 7 HOH A 74 1074 121 HOH HOH . J 7 HOH A 75 1075 87 HOH HOH . J 7 HOH A 76 1076 12 HOH HOH . J 7 HOH A 77 1077 117 HOH HOH . J 7 HOH A 78 1078 85 HOH HOH . J 7 HOH A 79 1079 129 HOH HOH . J 7 HOH A 80 1080 33 HOH HOH . J 7 HOH A 81 1081 111 HOH HOH . J 7 HOH A 82 1082 81 HOH HOH . J 7 HOH A 83 1083 93 HOH HOH . J 7 HOH A 84 1084 66 HOH HOH . J 7 HOH A 85 1085 80 HOH HOH . J 7 HOH A 86 1086 38 HOH HOH . J 7 HOH A 87 1087 64 HOH HOH . J 7 HOH A 88 1088 90 HOH HOH . J 7 HOH A 89 1089 92 HOH HOH . J 7 HOH A 90 1090 31 HOH HOH . J 7 HOH A 91 1091 52 HOH HOH . J 7 HOH A 92 1092 58 HOH HOH . J 7 HOH A 93 1093 59 HOH HOH . J 7 HOH A 94 1094 83 HOH HOH . J 7 HOH A 95 1095 65 HOH HOH . J 7 HOH A 96 1096 30 HOH HOH . J 7 HOH A 97 1097 69 HOH HOH . J 7 HOH A 98 1098 106 HOH HOH . J 7 HOH A 99 1099 82 HOH HOH . J 7 HOH A 100 1100 77 HOH HOH . J 7 HOH A 101 1101 127 HOH HOH . J 7 HOH A 102 1102 3 HOH HOH . J 7 HOH A 103 1103 43 HOH HOH . J 7 HOH A 104 1104 110 HOH HOH . J 7 HOH A 105 1105 18 HOH HOH . J 7 HOH A 106 1106 109 HOH HOH . J 7 HOH A 107 1107 115 HOH HOH . J 7 HOH A 108 1108 118 HOH HOH . J 7 HOH A 109 1109 53 HOH HOH . K 7 HOH E 1 701 37 HOH HOH . K 7 HOH E 2 702 10 HOH HOH . K 7 HOH E 3 703 45 HOH HOH . K 7 HOH E 4 704 48 HOH HOH . K 7 HOH E 5 705 74 HOH HOH . K 7 HOH E 6 706 57 HOH HOH . K 7 HOH E 7 707 5 HOH HOH . K 7 HOH E 8 708 32 HOH HOH . K 7 HOH E 9 709 54 HOH HOH . K 7 HOH E 10 710 16 HOH HOH . K 7 HOH E 11 711 103 HOH HOH . K 7 HOH E 12 712 44 HOH HOH . K 7 HOH E 13 713 130 HOH HOH . K 7 HOH E 14 714 113 HOH HOH . K 7 HOH E 15 715 68 HOH HOH . K 7 HOH E 16 716 70 HOH HOH . K 7 HOH E 17 717 107 HOH HOH . K 7 HOH E 18 718 100 HOH HOH . K 7 HOH E 19 719 112 HOH HOH . K 7 HOH E 20 720 119 HOH HOH . K 7 HOH E 21 721 114 HOH HOH . K 7 HOH E 22 722 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 6 -5.312 1.529 -5.025 1 75.83 ? C1 NAG 903 A 1 HETATM 2 C C2 NAG . . . F 6 -4.892 0.458 -6.004 1 78.58 ? C2 NAG 903 A 1 HETATM 3 C C3 NAG . . . F 6 -5.392 -0.904 -5.535 1 84.24 ? C3 NAG 903 A 1 HETATM 4 C C4 NAG . . . F 6 -4.801 -1.209 -4.162 1 86.04 ? C4 NAG 903 A 1 HETATM 5 C C5 NAG . . . F 6 -5.119 -0.085 -3.166 1 85.16 ? C5 NAG 903 A 1 HETATM 6 C C6 NAG . . . F 6 -4.335 -0.215 -1.876 1 83.29 ? C6 NAG 903 A 1 HETATM 7 C C7 NAG . . . F 6 -4.489 1.006 -8.349 1 77.07 ? C7 NAG 903 A 1 HETATM 8 C C8 NAG . . . F 6 -5.099 1.31 -9.688 1 73.39 ? C8 NAG 903 A 1 HETATM 9 N N2 NAG . . . F 6 -5.347 0.762 -7.35 1 73.82 ? N2 NAG 903 A 1 HETATM 10 O O3 NAG . . . F 6 -5.013 -1.913 -6.47 1 82.83 ? O3 NAG 903 A 1 HETATM 11 O O4 NAG . . . F 6 -5.274 -2.46 -3.667 1 84.23 ? O4 NAG 903 A 1 HETATM 12 O O5 NAG . . . F 6 -4.793 1.212 -3.707 1 80.57 ? O5 NAG 903 A 1 HETATM 13 O O6 NAG . . . F 6 -2.942 -0.372 -2.123 1 84.1 ? O6 NAG 903 A 1 HETATM 14 O O7 NAG . . . F 6 -3.272 0.972 -8.18 1 81.78 ? O7 NAG 903 A 1 # _model_server_stats.io_time_ms 81 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 46 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 14 #