data_7WHS # _model_server_result.job_id pyCwj6OqdBCcl2O5dx6xtQ _model_server_result.datetime_utc '2025-03-01 15:00:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7whs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":401}' # _entry.id 7WHS # _exptl.entry_id 7WHS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 K N N ? 2 M N N ? 2 O N N ? 2 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 118 A ASP 118 1_555 H MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc2 A OD1 ASP 226 A ASP 226 1_555 H MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc3 A OD2 ASP 226 A ASP 226 1_555 H MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? metalc ? metalc4 B OD2 ASP 118 B ASP 118 1_555 J MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc5 B OD1 ASP 226 B ASP 226 1_555 J MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc6 B OD2 ASP 226 B ASP 226 1_555 J MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc7 D OD2 ASP 118 D ASP 118 1_555 N MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? metalc ? metalc8 D OD1 ASP 226 D ASP 226 1_555 N MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc9 D OD2 ASP 226 D ASP 226 1_555 N MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc10 E OD2 ASP 118 E ASP 118 1_555 P MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc11 F OD1 ASP 226 F ASP 226 1_555 R MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc12 F OD2 ASP 226 F ASP 226 1_555 R MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 7WHS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 GTP A 1 401 401 GTP GTP . H 3 MG A 1 402 6 MG MG . I 2 GTP B 1 401 401 GTP GTP . J 3 MG B 1 402 6 MG MG . K 2 GTP C 1 401 401 GTP GTP . L 3 MG C 1 402 6 MG MG . M 2 GTP D 1 401 401 GTP GTP . N 3 MG D 1 402 6 MG MG . O 2 GTP E 1 401 401 GTP GTP . P 3 MG E 1 402 6 MG MG . Q 2 GTP F 1 401 401 GTP GTP . R 3 MG F 1 402 6 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . I 2 131.861 106.642 153.003 1 50.31 ? PG GTP 401 B 1 HETATM 2 O O1G GTP . . . I 2 130.778 107.686 152.998 1 50.31 ? O1G GTP 401 B 1 HETATM 3 O O2G GTP . . . I 2 131.32 105.251 153.183 1 50.31 ? O2G GTP 401 B 1 HETATM 4 O O3G GTP . . . I 2 132.972 106.957 153.967 1 50.31 ? O3G GTP 401 B 1 HETATM 5 O O3B GTP . . . I 2 132.457 106.676 151.477 1 50.31 ? O3B GTP 401 B 1 HETATM 6 P PB GTP . . . I 2 133.964 106.921 150.931 1 50.31 ? PB GTP 401 B 1 HETATM 7 O O1B GTP . . . I 2 134.166 106.205 149.659 1 50.31 ? O1B GTP 401 B 1 HETATM 8 O O2B GTP . . . I 2 134.2 108.371 150.87 1 50.31 ? O2B GTP 401 B 1 HETATM 9 O O3A GTP . . . I 2 134.936 106.242 151.983 1 50.31 ? O3A GTP 401 B 1 HETATM 10 P PA GTP . . . I 2 134.878 104.671 152.239 1 50.31 ? PA GTP 401 B 1 HETATM 11 O O1A GTP . . . I 2 133.752 104.052 151.479 1 50.31 ? O1A GTP 401 B 1 HETATM 12 O O2A GTP . . . I 2 136.237 104.135 151.945 1 50.31 ? O2A GTP 401 B 1 HETATM 13 O O5' GTP . . . I 2 134.614 104.597 153.835 1 50.31 ? O5' GTP 401 B 1 HETATM 14 C C5' GTP . . . I 2 135.624 104.358 154.818 1 50.31 ? C5' GTP 401 B 1 HETATM 15 C C4' GTP . . . I 2 135.575 102.965 155.469 1 50.31 ? C4' GTP 401 B 1 HETATM 16 O O4' GTP . . . I 2 134.289 102.338 155.454 1 50.31 ? O4' GTP 401 B 1 HETATM 17 C C3' GTP . . . I 2 136.453 101.982 154.751 1 50.31 ? C3' GTP 401 B 1 HETATM 18 O O3' GTP . . . I 2 136.866 101.006 155.67 1 50.31 ? O3' GTP 401 B 1 HETATM 19 C C2' GTP . . . I 2 135.505 101.247 153.868 1 50.31 ? C2' GTP 401 B 1 HETATM 20 O O2' GTP . . . I 2 136.047 99.995 153.519 1 50.31 ? O2' GTP 401 B 1 HETATM 21 C C1' GTP . . . I 2 134.299 101.097 154.742 1 50.31 ? C1' GTP 401 B 1 HETATM 22 N N9 GTP . . . I 2 133.116 100.963 153.864 1 50.31 ? N9 GTP 401 B 1 HETATM 23 C C8 GTP . . . I 2 132.413 101.998 153.402 1 50.31 ? C8 GTP 401 B 1 HETATM 24 N N7 GTP . . . I 2 131.391 101.605 152.63 1 50.31 ? N7 GTP 401 B 1 HETATM 25 C C5 GTP . . . I 2 131.428 100.276 152.588 1 50.31 ? C5 GTP 401 B 1 HETATM 26 C C6 GTP . . . I 2 130.625 99.233 151.942 1 50.31 ? C6 GTP 401 B 1 HETATM 27 O O6 GTP . . . I 2 129.651 99.545 151.242 1 50.31 ? O6 GTP 401 B 1 HETATM 28 N N1 GTP . . . I 2 130.962 97.966 152.124 1 50.31 ? N1 GTP 401 B 1 HETATM 29 C C2 GTP . . . I 2 132.004 97.633 152.873 1 50.31 ? C2 GTP 401 B 1 HETATM 30 N N2 GTP . . . I 2 132.285 96.327 153.009 1 50.31 ? N2 GTP 401 B 1 HETATM 31 N N3 GTP . . . I 2 132.783 98.536 153.492 1 50.31 ? N3 GTP 401 B 1 HETATM 32 C C4 GTP . . . I 2 132.557 99.853 153.394 1 50.31 ? C4 GTP 401 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #