data_7WHT
#
_model_server_result.job_id            9zdJ_dZsvt-nhMqTgBimGg 
_model_server_result.datetime_utc      '2024-10-20 01:26:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7wht 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":601}' 
#
_entry.id    7WHT 
#
_exptl.entry_id    7WHT 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              605.341 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE" 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7WHT 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7WHT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 I N N 
? 2 K N N 
? 2 M N N 
? 2 O N N 
? 2 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 118 A ASP 118 1_555 H MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc2 A OD1 ASP 226 A ASP 226 1_555 H MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? 
metalc ? metalc3 G O2A GDD . A GDD 601 1_555 H MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc4 G O3A GDD . A GDD 601 1_555 H MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? 
metalc ? metalc5 B OD1 ASP 118 B ASP 118 1_555 J MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? 
metalc ? metalc6 B OD2 ASP 118 B ASP 118 1_555 J MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc7 B OD1 ASP 226 B ASP 226 1_555 J MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? 
metalc ? metalc8 B OD2 ASP 226 B ASP 226 1_555 J MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? 
metalc ? metalc9 I O2A GDD . B GDD 601 1_555 J MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc10 C OD2 ASP 118 C ASP 118 1_555 L MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc11 C OD1 ASP 226 C ASP 226 1_555 L MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? 
metalc ? metalc12 K O2A GDD . C GDD 601 1_555 L MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc13 K O3A GDD . C GDD 601 1_555 L MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc14 D OD2 ASP 118 D ASP 118 1_555 N MG MG . D MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc15 D OD1 ASP 226 D ASP 226 1_555 N MG MG . D MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? 
metalc ? metalc16 M O2A GDD . D GDD 601 1_555 N MG MG . D MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc17 M O3A GDD . D GDD 601 1_555 N MG MG . D MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? 
metalc ? metalc18 E OD2 ASP 118 E ASP 118 1_555 P MG MG . E MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc19 E OD1 ASP 226 E ASP 226 1_555 P MG MG . E MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? 
metalc ? metalc20 E OD2 ASP 226 E ASP 226 1_555 P MG MG . E MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.792 ? 
metalc ? metalc21 O O2A GDD . E GDD 601 1_555 P MG MG . E MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc22 O O3A GDD . E GDD 601 1_555 P MG MG . E MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? 
metalc ? metalc23 F OD2 ASP 118 F ASP 118 1_555 R MG MG . F MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc24 F OD1 ASP 226 F ASP 226 1_555 R MG MG . F MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? 
metalc ? metalc25 Q O2A GDD . F GDD 601 1_555 R MG MG . F MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc26 Q O3A GDD . F GDD 601 1_555 R MG MG . F MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? 
#
_chem_comp.formula           'C16 H25 N5 O16 P2' 
_chem_comp.formula_weight    605.341 
_chem_comp.id                GDD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N2 C2 GDD sing 83 n n 
N2 H2N1 GDD sing 84 n n 
N2 H2N2 GDD sing 85 n n 
C2 N1 GDD sing 86 n n 
C2 N3 GDD doub 87 n n 
N1 C6 GDD sing 88 n n 
N1 H1 GDD sing 89 n n 
N3 C4 GDD sing 90 n n 
C4 C5 GDD doub 91 n y 
C4 N9 GDD sing 92 n y 
C5 C6 GDD sing 93 n n 
C5 N7 GDD sing 94 n y 
C6 O6 GDD doub 95 n n 
N7 C8 GDD doub 96 n y 
C8 N9 GDD sing 97 n y 
C8 H8 GDD sing 98 n n 
N9 C1' GDD sing 99 n n 
C1' C2' GDD sing 100 n n 
C1' O4' GDD sing 101 n n 
C1' H1' GDD sing 102 n n 
C2' O2' GDD sing 103 n n 
C2' C3' GDD sing 104 n n 
C2' H2' GDD sing 105 n n 
O2' HA GDD sing 106 n n 
C3' O3' GDD sing 107 n n 
C3' C4' GDD sing 108 n n 
C3' H3' GDD sing 109 n n 
O3' HB GDD sing 110 n n 
C4' O4' GDD sing 111 n n 
C4' C5' GDD sing 112 n n 
C4' H4' GDD sing 113 n n 
C5' O5' GDD sing 114 n n 
C5' "H5'1" GDD sing 115 n n 
C5' "H5'2" GDD sing 116 n n 
O5' PA GDD sing 117 n n 
PA O1A GDD doub 118 n n 
PA O2A GDD sing 119 n n 
PA O3A GDD sing 120 n n 
O2A HO2A GDD sing 121 n n 
O3A PB GDD sing 122 n n 
PB O2B GDD sing 123 n n 
PB O3B GDD doub 124 n n 
PB O1B GDD sing 125 n n 
O2B HO2B GDD sing 126 n n 
O1B C11 GDD sing 127 n n 
C11 O51 GDD sing 128 n n 
C11 C21 GDD sing 129 n n 
C11 H11 GDD sing 130 n n 
O51 C51 GDD sing 131 n n 
C51 C61 GDD sing 132 n n 
C51 C41 GDD sing 133 n n 
C51 H51 GDD sing 134 n n 
C61 O6A GDD sing 135 n n 
C61 H611 GDD sing 136 n n 
C61 H612 GDD sing 137 n n 
O6A H6A GDD sing 138 n n 
C21 O21 GDD sing 139 n n 
C21 C31 GDD sing 140 n n 
C21 H21 GDD sing 141 n n 
O21 HC GDD sing 142 n n 
C31 O31 GDD sing 143 n n 
C31 C41 GDD sing 144 n n 
C31 H31 GDD sing 145 n n 
O31 HD GDD sing 146 n n 
C41 O41 GDD sing 147 n n 
C41 H41 GDD sing 148 n n 
O41 HE GDD sing 149 n n 
#
_atom_sites.entry_id                     7WHT 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 GDD A 1 601 601 GDD GDD . 
H 3 MG A 1 602 1 MG MG . 
I 2 GDD B 1 601 601 GDD GDD . 
J 3 MG B 1 602 2 MG MG . 
K 2 GDD C 1 601 601 GDD GDD . 
L 3 MG C 1 602 3 MG MG . 
M 2 GDD D 1 601 601 GDD GDD . 
N 3 MG D 1 602 4 MG MG . 
O 2 GDD E 1 601 601 GDD GDD . 
P 3 MG E 1 602 5 MG MG . 
Q 2 GDD F 1 601 601 GDD GDD . 
R 3 MG F 1 602 6 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N2 GDD . . . M 2 163.673 119.556 149.816 1 103.6 ? N2 GDD 601 D 1 
HETATM 2 C C2 GDD . . . M 2 164.955 119.391 150.221 1 103.6 ? C2 GDD 601 D 1 
HETATM 3 N N1 GDD . . . M 2 165.968 119.668 149.4 1 103.6 ? N1 GDD 601 D 1 
HETATM 4 N N3 GDD . . . M 2 165.176 118.944 151.47 1 103.6 ? N3 GDD 601 D 1 
HETATM 5 C C4 GDD . . . M 2 166.422 118.749 151.965 1 103.6 ? C4 GDD 601 D 1 
HETATM 6 C C5 GDD . . . M 2 167.552 119.037 151.106 1 103.6 ? C5 GDD 601 D 1 
HETATM 7 C C6 GDD . . . M 2 167.24 119.521 149.766 1 103.6 ? C6 GDD 601 D 1 
HETATM 8 O O6 GDD . . . M 2 168.157 119.779 148.992 1 103.6 ? O6 GDD 601 D 1 
HETATM 9 N N7 GDD . . . M 2 168.656 118.774 151.797 1 103.6 ? N7 GDD 601 D 1 
HETATM 10 C C8 GDD . . . M 2 168.263 118.348 153.01 1 103.6 ? C8 GDD 601 D 1 
HETATM 11 N N9 GDD . . . M 2 166.957 118.339 153.091 1 103.6 ? N9 GDD 601 D 1 
HETATM 12 C C1' GDD . . . M 2 166.271 117.928 154.272 1 103.6 ? C1' GDD 601 D 1 
HETATM 13 C C2' GDD . . . M 2 166.302 119.039 155.226 1 103.6 ? C2' GDD 601 D 1 
HETATM 14 O O2' GDD . . . M 2 167.468 118.713 155.936 1 103.6 ? O2' GDD 601 D 1 
HETATM 15 C C3' GDD . . . M 2 165.087 118.758 156.052 1 103.6 ? C3' GDD 601 D 1 
HETATM 16 O O3' GDD . . . M 2 165.454 118.004 157.204 1 103.6 ? O3' GDD 601 D 1 
HETATM 17 C C4' GDD . . . M 2 164.243 117.868 155.186 1 103.6 ? C4' GDD 601 D 1 
HETATM 18 O O4' GDD . . . M 2 164.929 117.671 153.985 1 103.6 ? O4' GDD 601 D 1 
HETATM 19 C C5' GDD . . . M 2 162.837 118.362 154.95 1 103.6 ? C5' GDD 601 D 1 
HETATM 20 O O5' GDD . . . M 2 162.778 119.196 153.817 1 103.6 ? O5' GDD 601 D 1 
HETATM 21 P PA GDD . . . M 2 162.613 120.739 154.094 1 103.6 ? PA GDD 601 D 1 
HETATM 22 O O1A GDD . . . M 2 161.569 121.305 153.193 1 103.6 ? O1A GDD 601 D 1 
HETATM 23 O O2A GDD . . . M 2 164.008 121.24 154.104 1 103.6 ? O2A GDD 601 D 1 
HETATM 24 O O3A GDD . . . M 2 162.066 120.769 155.568 1 103.6 ? O3A GDD 601 D 1 
HETATM 25 P PB GDD . . . M 2 160.503 120.911 155.793 1 103.6 ? PB GDD 601 D 1 
HETATM 26 O O2B GDD . . . M 2 159.849 119.712 155.191 1 103.6 ? O2B GDD 601 D 1 
HETATM 27 O O3B GDD . . . M 2 160.038 122.279 155.409 1 103.6 ? O3B GDD 601 D 1 
HETATM 28 O O1B GDD . . . M 2 160.476 120.756 157.374 1 103.6 ? O1B GDD 601 D 1 
HETATM 29 C C11 GDD . . . M 2 161.576 120.104 157.98 1 103.6 ? C11 GDD 601 D 1 
HETATM 30 O O51 GDD . . . M 2 162.548 121.076 158.372 1 103.6 ? O51 GDD 601 D 1 
HETATM 31 C C51 GDD . . . M 2 162.203 121.799 159.536 1 103.6 ? C51 GDD 601 D 1 
HETATM 32 C C61 GDD . . . M 2 163.266 122.837 159.787 1 103.6 ? C61 GDD 601 D 1 
HETATM 33 O O6A GDD . . . M 2 162.692 124.081 159.43 1 103.6 ? O6A GDD 601 D 1 
HETATM 34 C C21 GDD . . . M 2 161.068 119.317 159.172 1 103.6 ? C21 GDD 601 D 1 
HETATM 35 O O21 GDD . . . M 2 160.877 117.951 158.834 1 103.6 ? O21 GDD 601 D 1 
HETATM 36 C C31 GDD . . . M 2 162.133 119.392 160.215 1 103.6 ? C31 GDD 601 D 1 
HETATM 37 O O31 GDD . . . M 2 163.35 119.052 159.563 1 103.6 ? O31 GDD 601 D 1 
HETATM 38 C C41 GDD . . . M 2 162.155 120.82 160.683 1 103.6 ? C41 GDD 601 D 1 
HETATM 39 O O41 GDD . . . M 2 160.942 121.019 161.395 1 103.6 ? O41 GDD 601 D 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    112 
_model_server_stats.query_time_ms           493 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           39 
#