data_7WHV # _model_server_result.job_id wyZCQaJIHQG4KTvGeqhwRg _model_server_result.datetime_utc '2024-12-26 13:29:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7whv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1603}' # _entry.id 7WHV # _exptl.entry_id 7WHV _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 763.1 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WHV _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WHV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG B 414 NAG 3 n C NAG 2 C 2 NAG B 415 NAG 3 n C BMA 3 C 3 BMA B 416 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 110 B CYS 110 1_555 B SG CYS 159 B CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 B SG CYS 216 B CYS 216 1_555 B SG CYS 231 B CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? covale ? covale1 A N SER 1345 A SER 1345 1_555 G C48 6PL . A 6PL 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 B ND2 ASN 240 B ASN 240 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? covale ? covale4 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? metalc ? metalc1 A OD1 ASP 667 A ASP 667 1_555 D MG MG . A MG 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc2 A OD2 ASP 667 A ASP 667 1_555 D MG MG . A MG 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? # _chem_comp.formula 'C42 H85 N O8 P 1' _chem_comp.formula_weight 763.1 _chem_comp.id 6PL _chem_comp.mon_nstd_flag . _chem_comp.name '(4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-PALMITOYL-2-STEAROYL-SN-GLYCERO-3-PHOSPHOCHOLINE # _atom_sites.entry_id 7WHV _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 1601 1438 MG MG . E 5 BEF A 1 1602 2002 BEF BEF . F 6 6PL A 1 1603 2003 6PL 6PL . G 6 6PL A 1 1604 2004 6PL 6PL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C26 6PL . . . F 6 185.136 151.089 175.588 1 32.1 ? C26 6PL 1603 A 1 HETATM 2 C C25 6PL . . . F 6 185.063 152.402 176.337 1 32.1 ? C25 6PL 1603 A 1 HETATM 3 C C24 6PL . . . F 6 186.389 152.88 176.862 1 32.1 ? C24 6PL 1603 A 1 HETATM 4 C C23 6PL . . . F 6 186.395 154.258 177.476 1 32.1 ? C23 6PL 1603 A 1 HETATM 5 C C22 6PL . . . F 6 187.703 154.637 178.128 1 32.1 ? C22 6PL 1603 A 1 HETATM 6 C C21 6PL . . . F 6 187.805 156.086 178.535 1 32.1 ? C21 6PL 1603 A 1 HETATM 7 C C20 6PL . . . F 6 188.751 156.338 179.679 1 32.1 ? C20 6PL 1603 A 1 HETATM 8 C C19 6PL . . . F 6 190.185 156.029 179.391 1 32.1 ? C19 6PL 1603 A 1 HETATM 9 C C18 6PL . . . F 6 190.881 157.07 178.577 1 32.1 ? C18 6PL 1603 A 1 HETATM 10 C C17 6PL . . . F 6 191.028 158.383 179.283 1 32.1 ? C17 6PL 1603 A 1 HETATM 11 C C16 6PL . . . F 6 191.953 159.345 178.595 1 32.1 ? C16 6PL 1603 A 1 HETATM 12 C C15 6PL . . . F 6 192.064 160.66 179.299 1 32.1 ? C15 6PL 1603 A 1 HETATM 13 C C14 6PL . . . F 6 192.43 160.539 180.739 1 32.1 ? C14 6PL 1603 A 1 HETATM 14 C C13 6PL . . . F 6 192.234 161.808 181.524 1 32.1 ? C13 6PL 1603 A 1 HETATM 15 C C12 6PL . . . F 6 193.424 162.686 181.494 1 32.1 ? C12 6PL 1603 A 1 HETATM 16 C C11 6PL . . . F 6 194.553 162.177 182.295 1 32.1 ? C11 6PL 1603 A 1 HETATM 17 O O11 6PL . . . F 6 194.646 162.292 183.477 1 32.1 ? O11 6PL 1603 A 1 HETATM 18 O O3 6PL . . . F 6 195.461 161.588 181.537 1 32.1 ? O3 6PL 1603 A 1 HETATM 19 C C3 6PL . . . F 6 196.681 161.202 182.196 1 32.1 ? C3 6PL 1603 A 1 HETATM 20 C C2 6PL . . . F 6 196.529 159.812 182.749 1 32.1 ? C2 6PL 1603 A 1 HETATM 21 C C1 6PL . . . F 6 197.177 159.695 184.103 1 32.1 ? C1 6PL 1603 A 1 HETATM 22 O O3P 6PL . . . F 6 198.495 160.278 184.062 1 32.1 ? O3P 6PL 1603 A 1 HETATM 23 P P 6PL . . . F 6 199.745 159.364 184.477 1 32.1 ? P 6PL 1603 A 1 HETATM 24 O O1P 6PL . . . F 6 200.861 160.247 184.95 1 32.1 ? O1P 6PL 1603 A 1 HETATM 25 O O2P 6PL . . . F 6 199.22 158.274 185.363 1 32.1 ? O2P 6PL 1603 A 1 HETATM 26 O O4P 6PL . . . F 6 200.176 158.712 183.075 1 32.1 ? O4P 6PL 1603 A 1 HETATM 27 C C4 6PL . . . F 6 201.463 158.053 182.974 1 32.1 ? C4 6PL 1603 A 1 HETATM 28 C C5 6PL . . . F 6 201.697 157.579 181.561 1 32.1 ? C5 6PL 1603 A 1 HETATM 29 N N 6PL . . . F 6 202.907 156.688 181.369 1 32.1 ? N 6PL 1603 A 1 HETATM 30 C C7 6PL . . . F 6 202.724 155.426 182.133 1 32.1 ? C7 6PL 1603 A 1 HETATM 31 C C8 6PL . . . F 6 203.09 156.358 179.928 1 32.1 ? C8 6PL 1603 A 1 HETATM 32 C C6 6PL . . . F 6 204.123 157.373 181.872 1 32.1 ? C6 6PL 1603 A 1 HETATM 33 O O2 6PL . . . F 6 197.047 158.805 181.835 1 32.1 ? O2 6PL 1603 A 1 HETATM 34 C C31 6PL . . . F 6 196.332 158.458 180.749 1 32.1 ? C31 6PL 1603 A 1 HETATM 35 O O31 6PL . . . F 6 196.096 159.171 179.81 1 32.1 ? O31 6PL 1603 A 1 HETATM 36 C C32 6PL . . . F 6 195.847 157.051 180.828 1 32.1 ? C32 6PL 1603 A 1 HETATM 37 C C33 6PL . . . F 6 194.99 156.668 179.674 1 32.1 ? C33 6PL 1603 A 1 HETATM 38 C C34 6PL . . . F 6 194.735 155.181 179.634 1 32.1 ? C34 6PL 1603 A 1 HETATM 39 C C35 6PL . . . F 6 193.794 154.75 178.552 1 32.1 ? C35 6PL 1603 A 1 HETATM 40 C C36 6PL . . . F 6 193.564 153.267 178.5 1 32.1 ? C36 6PL 1603 A 1 HETATM 41 C C37 6PL . . . F 6 192.512 152.877 177.507 1 32.1 ? C37 6PL 1603 A 1 HETATM 42 C C38 6PL . . . F 6 192.313 151.4 177.358 1 32.1 ? C38 6PL 1603 A 1 HETATM 43 C C39 6PL . . . F 6 191.3 151.054 176.305 1 32.1 ? C39 6PL 1603 A 1 HETATM 44 C C40 6PL . . . F 6 189.883 151.359 176.693 1 32.1 ? C40 6PL 1603 A 1 HETATM 45 C C41 6PL . . . F 6 189.188 150.218 177.378 1 32.1 ? C41 6PL 1603 A 1 HETATM 46 C C42 6PL . . . F 6 189.138 148.97 176.538 1 32.1 ? C42 6PL 1603 A 1 HETATM 47 C C43 6PL . . . F 6 188.483 147.791 177.2 1 32.1 ? C43 6PL 1603 A 1 HETATM 48 C C44 6PL . . . F 6 189.108 147.388 178.512 1 32.1 ? C44 6PL 1603 A 1 HETATM 49 C C45 6PL . . . F 6 188.561 146.099 179.078 1 32.1 ? C45 6PL 1603 A 1 HETATM 50 C C46 6PL . . . F 6 187.057 145.999 179.025 1 32.1 ? C46 6PL 1603 A 1 HETATM 51 C C47 6PL . . . F 6 186.406 144.966 179.901 1 32.1 ? C47 6PL 1603 A 1 HETATM 52 C C48 6PL . . . F 6 184.895 145.019 179.865 1 32.1 ? C48 6PL 1603 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 52 #