data_7WHV # _model_server_result.job_id rmdzD3nFRv2f8GKaSGFqgg _model_server_result.datetime_utc '2025-07-13 19:04:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7whv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1604}' # _entry.id 7WHV # _exptl.entry_id 7WHV _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 763.1 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WHV _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WHV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG B 414 NAG 3 n C NAG 2 C 2 NAG B 415 NAG 3 n C BMA 3 C 3 BMA B 416 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 110 B CYS 110 1_555 B SG CYS 159 B CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 B SG CYS 216 B CYS 216 1_555 B SG CYS 231 B CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? covale ? covale1 A N SER 1345 A SER 1345 1_555 G C48 6PL . A 6PL 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 B ND2 ASN 240 B ASN 240 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? covale ? covale4 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? metalc ? metalc1 A OD1 ASP 667 A ASP 667 1_555 D MG MG . A MG 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc2 A OD2 ASP 667 A ASP 667 1_555 D MG MG . A MG 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? # _chem_comp.formula 'C42 H85 N O8 P 1' _chem_comp.formula_weight 763.1 _chem_comp.id 6PL _chem_comp.mon_nstd_flag . _chem_comp.name '(4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-PALMITOYL-2-STEAROYL-SN-GLYCERO-3-PHOSPHOCHOLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C26 C25 6PL sing 1 n n C26 H261 6PL sing 2 n n C26 H262 6PL sing 3 n n C26 H263 6PL sing 4 n n C25 C24 6PL sing 5 n n C25 H251 6PL sing 6 n n C25 H252 6PL sing 7 n n C24 C23 6PL sing 8 n n C24 H241 6PL sing 9 n n C24 H242 6PL sing 10 n n C23 C22 6PL sing 11 n n C23 H231 6PL sing 12 n n C23 H232 6PL sing 13 n n C22 C21 6PL sing 14 n n C22 H221 6PL sing 15 n n C22 H222 6PL sing 16 n n C21 C20 6PL sing 17 n n C21 H211 6PL sing 18 n n C21 H212 6PL sing 19 n n C20 C19 6PL sing 20 n n C20 H201 6PL sing 21 n n C20 H202 6PL sing 22 n n C19 C18 6PL sing 23 n n C19 H191 6PL sing 24 n n C19 H192 6PL sing 25 n n C18 C17 6PL sing 26 n n C18 H181 6PL sing 27 n n C18 H182 6PL sing 28 n n C17 C16 6PL sing 29 n n C17 H171 6PL sing 30 n n C17 H172 6PL sing 31 n n C16 C15 6PL sing 32 n n C16 H161 6PL sing 33 n n C16 H162 6PL sing 34 n n C15 C14 6PL sing 35 n n C15 H151 6PL sing 36 n n C15 H152 6PL sing 37 n n C14 C13 6PL sing 38 n n C14 H141 6PL sing 39 n n C14 H142 6PL sing 40 n n C13 C12 6PL sing 41 n n C13 H131 6PL sing 42 n n C13 H132 6PL sing 43 n n C12 C11 6PL sing 44 n n C12 H121 6PL sing 45 n n C12 H122 6PL sing 46 n n C11 O11 6PL doub 47 n n C11 O3 6PL sing 48 n n O3 C3 6PL sing 49 n n C3 C2 6PL sing 50 n n C3 H31 6PL sing 51 n n C3 H32 6PL sing 52 n n C2 C1 6PL sing 53 n n C2 O2 6PL sing 54 n n C2 H2 6PL sing 55 n n C1 O3P 6PL sing 56 n n C1 H11 6PL sing 57 n n C1 H12 6PL sing 58 n n O3P P 6PL sing 59 n n P O1P 6PL doub 60 n n P O2P 6PL sing 61 n n P O4P 6PL sing 62 n n O2P H2P 6PL sing 63 n n O4P C4 6PL sing 64 n n C4 C5 6PL sing 65 n n C4 H41 6PL sing 66 n n C4 H42 6PL sing 67 n n C5 N 6PL sing 68 n n C5 H51 6PL sing 69 n n C5 H52 6PL sing 70 n n N C7 6PL sing 71 n n N C8 6PL sing 72 n n N C6 6PL sing 73 n n C7 H71 6PL sing 74 n n C7 H72 6PL sing 75 n n C7 H73 6PL sing 76 n n C8 H81 6PL sing 77 n n C8 H82 6PL sing 78 n n C8 H83 6PL sing 79 n n C6 H61 6PL sing 80 n n C6 H62 6PL sing 81 n n C6 H63 6PL sing 82 n n O2 C31 6PL sing 83 n n C31 O31 6PL doub 84 n n C31 C32 6PL sing 85 n n C32 C33 6PL sing 86 n n C32 H321 6PL sing 87 n n C32 H322 6PL sing 88 n n C33 C34 6PL sing 89 n n C33 H331 6PL sing 90 n n C33 H332 6PL sing 91 n n C34 C35 6PL sing 92 n n C34 H341 6PL sing 93 n n C34 H342 6PL sing 94 n n C35 C36 6PL sing 95 n n C35 H351 6PL sing 96 n n C35 H352 6PL sing 97 n n C36 C37 6PL sing 98 n n C36 H361 6PL sing 99 n n C36 H362 6PL sing 100 n n C37 C38 6PL sing 101 n n C37 H371 6PL sing 102 n n C37 H372 6PL sing 103 n n C38 C39 6PL sing 104 n n C38 H381 6PL sing 105 n n C38 H382 6PL sing 106 n n C39 C40 6PL sing 107 n n C39 H391 6PL sing 108 n n C39 H392 6PL sing 109 n n C40 C41 6PL sing 110 n n C40 H401 6PL sing 111 n n C40 H402 6PL sing 112 n n C41 C42 6PL sing 113 n n C41 H411 6PL sing 114 n n C41 H412 6PL sing 115 n n C42 C43 6PL sing 116 n n C42 H421 6PL sing 117 n n C42 H422 6PL sing 118 n n C43 C44 6PL sing 119 n n C43 H431 6PL sing 120 n n C43 H432 6PL sing 121 n n C44 C45 6PL sing 122 n n C44 H441 6PL sing 123 n n C44 H442 6PL sing 124 n n C45 C46 6PL sing 125 n n C45 H451 6PL sing 126 n n C45 H452 6PL sing 127 n n C46 C47 6PL sing 128 n n C46 H461 6PL sing 129 n n C46 H462 6PL sing 130 n n C47 C48 6PL sing 131 n n C47 H471 6PL sing 132 n n C47 H472 6PL sing 133 n n C48 H481 6PL sing 134 n n C48 H482 6PL sing 135 n n C48 H483 6PL sing 136 n n # _atom_sites.entry_id 7WHV _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 1601 1438 MG MG . E 5 BEF A 1 1602 2002 BEF BEF . F 6 6PL A 1 1603 2003 6PL 6PL . G 6 6PL A 1 1604 2004 6PL 6PL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C26 6PL . . . G 6 183.234 161.36 171.166 1 32.05 ? C26 6PL 1604 A 1 HETATM 2 C C25 6PL . . . G 6 184.478 161.002 171.941 1 32.05 ? C25 6PL 1604 A 1 HETATM 3 C C24 6PL . . . G 6 184.783 159.525 172.083 1 32.05 ? C24 6PL 1604 A 1 HETATM 4 C C23 6PL . . . G 6 183.69 158.66 172.67 1 32.05 ? C23 6PL 1604 A 1 HETATM 5 C C22 6PL . . . G 6 184.161 157.322 173.22 1 32.05 ? C22 6PL 1604 A 1 HETATM 6 C C21 6PL . . . G 6 183.099 156.519 173.944 1 32.05 ? C21 6PL 1604 A 1 HETATM 7 C C20 6PL . . . G 6 181.902 156.199 173.096 1 32.05 ? C20 6PL 1604 A 1 HETATM 8 C C19 6PL . . . G 6 180.809 155.417 173.783 1 32.05 ? C19 6PL 1604 A 1 HETATM 9 C C18 6PL . . . G 6 179.657 155.113 172.861 1 32.05 ? C18 6PL 1604 A 1 HETATM 10 C C17 6PL . . . G 6 178.531 154.309 173.45 1 32.05 ? C17 6PL 1604 A 1 HETATM 11 C C16 6PL . . . G 6 177.574 153.802 172.404 1 32.05 ? C16 6PL 1604 A 1 HETATM 12 C C15 6PL . . . G 6 176.44 152.967 172.932 1 32.05 ? C15 6PL 1604 A 1 HETATM 13 C C14 6PL . . . G 6 175.589 152.336 171.858 1 32.05 ? C14 6PL 1604 A 1 HETATM 14 C C13 6PL . . . G 6 174.443 151.482 172.377 1 32.05 ? C13 6PL 1604 A 1 HETATM 15 C C12 6PL . . . G 6 173.495 151.054 171.295 1 32.05 ? C12 6PL 1604 A 1 HETATM 16 C C11 6PL . . . G 6 172.435 152.073 170.943 1 32.05 ? C11 6PL 1604 A 1 HETATM 17 O O11 6PL . . . G 6 171.626 151.927 170.066 1 32.05 ? O11 6PL 1604 A 1 HETATM 18 O O3 6PL . . . G 6 172.475 153.152 171.723 1 32.05 ? O3 6PL 1604 A 1 HETATM 19 C C3 6PL . . . G 6 171.492 154.178 171.457 1 32.05 ? C3 6PL 1604 A 1 HETATM 20 C C2 6PL . . . G 6 171.73 155.342 172.395 1 32.05 ? C2 6PL 1604 A 1 HETATM 21 C C1 6PL . . . G 6 170.891 156.559 172.077 1 32.05 ? C1 6PL 1604 A 1 HETATM 22 O O3P 6PL . . . G 6 169.529 156.181 172.373 1 32.05 ? O3P 6PL 1604 A 1 HETATM 23 P P 6PL . . . G 6 168.332 157.223 172.156 1 32.05 ? P 6PL 1604 A 1 HETATM 24 O O1P 6PL . . . G 6 168.1 158.097 173.358 1 32.05 ? O1P 6PL 1604 A 1 HETATM 25 O O2P 6PL . . . G 6 168.641 157.862 170.834 1 32.05 ? O2P 6PL 1604 A 1 HETATM 26 O O4P 6PL . . . G 6 167.161 156.141 172 1 32.05 ? O4P 6PL 1604 A 1 HETATM 27 C C4 6PL . . . G 6 165.787 156.463 172.318 1 32.05 ? C4 6PL 1604 A 1 HETATM 28 C C5 6PL . . . G 6 165.061 155.252 171.79 1 32.05 ? C5 6PL 1604 A 1 HETATM 29 N N 6PL . . . G 6 164.124 154.572 172.761 1 32.05 ? N 6PL 1604 A 1 HETATM 30 C C7 6PL . . . G 6 163.066 155.537 173.141 1 32.05 ? C7 6PL 1604 A 1 HETATM 31 C C8 6PL . . . G 6 163.501 153.38 172.126 1 32.05 ? C8 6PL 1604 A 1 HETATM 32 C C6 6PL . . . G 6 164.869 154.144 173.976 1 32.05 ? C6 6PL 1604 A 1 HETATM 33 O O2 6PL . . . G 6 173.131 155.715 172.373 1 32.05 ? O2 6PL 1604 A 1 HETATM 34 C C31 6PL . . . G 6 173.656 156.26 173.479 1 32.05 ? C31 6PL 1604 A 1 HETATM 35 O O31 6PL . . . G 6 173.022 156.572 174.449 1 32.05 ? O31 6PL 1604 A 1 HETATM 36 C C32 6PL . . . G 6 175.139 156.343 173.397 1 32.05 ? C32 6PL 1604 A 1 HETATM 37 C C33 6PL . . . G 6 175.665 157.729 173.324 1 32.05 ? C33 6PL 1604 A 1 HETATM 38 C C34 6PL . . . G 6 177.171 157.749 173.465 1 32.05 ? C34 6PL 1604 A 1 HETATM 39 C C35 6PL . . . G 6 177.777 159.108 173.305 1 32.05 ? C35 6PL 1604 A 1 HETATM 40 C C36 6PL . . . G 6 177.525 159.706 171.962 1 32.05 ? C36 6PL 1604 A 1 HETATM 41 C C37 6PL . . . G 6 178.69 159.703 171.003 1 32.05 ? C37 6PL 1604 A 1 HETATM 42 C C38 6PL . . . G 6 179.157 158.345 170.561 1 32.05 ? C38 6PL 1604 A 1 HETATM 43 C C39 6PL . . . G 6 179.87 158.323 169.245 1 32.05 ? C39 6PL 1604 A 1 HETATM 44 C C40 6PL . . . G 6 178.967 158.504 168.062 1 32.05 ? C40 6PL 1604 A 1 HETATM 45 C C41 6PL . . . G 6 179.389 157.696 166.874 1 32.05 ? C41 6PL 1604 A 1 HETATM 46 C C42 6PL . . . G 6 178.558 157.911 165.645 1 32.05 ? C42 6PL 1604 A 1 HETATM 47 C C43 6PL . . . G 6 178.699 159.275 165.025 1 32.05 ? C43 6PL 1604 A 1 HETATM 48 C C44 6PL . . . G 6 178.292 159.304 163.579 1 32.05 ? C44 6PL 1604 A 1 HETATM 49 C C45 6PL . . . G 6 178.721 160.536 162.822 1 32.05 ? C45 6PL 1604 A 1 HETATM 50 C C46 6PL . . . G 6 177.848 161.742 163.021 1 32.05 ? C46 6PL 1604 A 1 HETATM 51 C C47 6PL . . . G 6 178.301 162.914 162.205 1 32.05 ? C47 6PL 1604 A 1 HETATM 52 C C48 6PL . . . G 6 177.27 163.995 161.95 1 32.05 ? C48 6PL 1604 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 440 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 52 #