data_7WIE # _model_server_result.job_id S5jun5rjiWXXQG_2lD6x5A _model_server_result.datetime_utc '2025-01-25 13:05:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wie # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 7WIE # _exptl.entry_id 7WIE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.138 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-DEAZAGUANINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7WIE _cell.length_a 66.944 _cell.length_b 66.944 _cell.length_c 94.572 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WIE _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' GTP 1 V GTP 6 1_555 A P G 2 V G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.602 ? hydrog WATSON-CRICK hydrog1 A N1 GTP 1 V GTP 6 1_555 A N3 C 50 V C 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 GTP 1 V GTP 6 1_555 A O2 C 50 V C 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 GTP 1 V GTP 6 1_555 A N4 C 50 V C 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 G 2 V G 7 1_555 A N3 C 49 V C 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 G 2 V G 7 1_555 A O2 C 49 V C 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 G 2 V G 7 1_555 A N4 C 49 V C 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 C 3 V C 8 1_555 A N1 G 48 V G 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 C 3 V C 8 1_555 A O6 G 48 V G 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 C 3 V C 8 1_555 A N2 G 48 V G 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 G 4 V G 9 1_555 A N3 C 47 V C 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 G 4 V G 9 1_555 A O2 C 47 V C 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 G 4 V G 9 1_555 A N4 C 47 V C 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 U 5 V U 10 1_555 A N1 A 46 V A 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O4 U 5 V U 10 1_555 A N6 A 46 V A 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog15 A N7 G 6 V G 11 1_555 A N2 G 45 V G 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog16 A O6 G 6 V G 11 1_555 A N1 G 45 V G 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog17 A N1 G 7 V G 12 1_555 A N1 A 44 V A 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog18 A O6 G 7 V G 12 1_555 A N6 A 44 V A 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog19 A N3 U 8 V U 13 1_555 A O6 G 43 V G 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog20 A O2 U 8 V U 13 1_555 A N1 G 43 V G 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N3 C 9 V C 14 1_555 A N1 G 42 V G 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N4 C 9 V C 14 1_555 A O6 G 42 V G 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O2 C 9 V C 14 1_555 A N2 G 42 V G 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N3 C 10 V C 15 1_555 A N1 G 41 V G 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N4 C 10 V C 15 1_555 A O6 G 41 V G 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O2 C 10 V C 15 1_555 A N2 G 41 V G 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N1 G 11 V G 16 1_555 A N3 C 40 V C 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N2 G 11 V G 16 1_555 A O2 C 40 V C 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A O6 G 11 V G 16 1_555 A N4 C 40 V C 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'U-A PAIR' hydrog30 A O2 U 12 V U 17 1_555 A N6 A 15 V A 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N3 U 12 V U 17 1_555 A N1 A 39 V A 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A O4 U 12 V U 17 1_555 A N6 A 39 V A 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-C MISPAIR' hydrog33 A N6 A 15 V A 20 1_555 A O2 C 40 V C 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-A MISPAIR' hydrog34 A N6 A 16 V A 21 1_555 A N3 A 39 V A 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 A N1 G 20 V G 25 1_555 A N3 C 37 V C 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 A N2 G 20 V G 25 1_555 A O2 C 37 V C 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 A O6 G 20 V G 25 1_555 A N4 C 37 V C 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 A N3 U 21 V U 26 1_555 A N1 A 36 V A 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 A O4 U 21 V U 26 1_555 A N6 A 36 V A 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 A N3 U 22 V U 27 1_555 A N1 A 35 V A 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 A O4 U 22 V U 27 1_555 A N6 A 35 V A 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 A N3 C 23 V C 28 1_555 A N1 G 34 V G 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 A N4 C 23 V C 28 1_555 A O6 G 34 V G 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog44 A O2 C 23 V C 28 1_555 A N2 G 34 V G 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog45 A N3 C 24 V C 29 1_555 A N1 G 33 V G 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog46 A N4 C 24 V C 29 1_555 A O6 G 33 V G 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog47 A O2 C 24 V C 29 1_555 A N2 G 33 V G 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog48 A N3 U 25 V U 30 1_555 A N1 A 32 V A 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog49 A O4 U 25 V U 30 1_555 A N6 A 32 V A 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog50 A N3 C 26 V C 31 1_555 A N1 G 31 V G 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog51 A N4 C 26 V C 31 1_555 A O6 G 31 V G 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog52 A O2 C 26 V C 31 1_555 A N2 G 31 V G 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-A MISPAIR' hydrog53 A N2 G 27 V G 32 1_555 A N7 A 30 V A 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C6 H6 N4 O' _chem_comp.formula_weight 150.138 _chem_comp.id 7DG _chem_comp.mon_nstd_flag . _chem_comp.name 7-DEAZAGUANINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C8 7DG doub 1 n n N9 C4 7DG sing 2 n n C8 C7 7DG sing 3 n n C8 H8 7DG sing 4 n n C7 C5 7DG sing 5 n n C7 H71 7DG sing 6 n n C7 H72 7DG sing 7 n n C5 C6 7DG sing 8 n n C5 C4 7DG doub 9 n n C6 O6 7DG doub 10 n n C6 N1 7DG sing 11 n n N1 C2 7DG sing 12 n n N1 HN1 7DG sing 13 n n C2 N2 7DG sing 14 n n C2 N3 7DG doub 15 n n N2 HN21 7DG sing 16 n n N2 HN22 7DG sing 17 n n N3 C4 7DG sing 18 n n # _atom_sites.entry_id 7WIE _atom_sites.fract_transf_matrix[1][1] 0.014938 _atom_sites.fract_transf_matrix[1][2] 0.008624 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017249 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010574 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 7DG _pdbx_nonpoly_scheme.pdb_strand_id V _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 101 _pdbx_nonpoly_scheme.pdb_mon_id 7DG _pdbx_nonpoly_scheme.auth_mon_id 7DG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 7DG . . . B 2 -32.189 5.333 11.222 1 89.53 ? N9 7DG 101 V 1 HETATM 2 C C8 7DG . . . B 2 -31.768 4.73 10.174 0.66 79.88 ? C8 7DG 101 V 1 HETATM 3 C C7 7DG . . . B 2 -32.571 5.161 8.972 0.35 79.85 ? C7 7DG 101 V 1 HETATM 4 C C5 7DG . . . B 2 -33.53 6.114 9.616 1 84.25 ? C5 7DG 101 V 1 HETATM 5 C C6 7DG . . . B 2 -34.607 6.929 9.133 1 94.79 ? C6 7DG 101 V 1 HETATM 6 O O6 7DG . . . B 2 -34.979 6.982 7.957 1 89.23 ? O6 7DG 101 V 1 HETATM 7 N N1 7DG . . . B 2 -35.234 7.683 10.097 1 96.07 ? N1 7DG 101 V 1 HETATM 8 C C2 7DG . . . B 2 -34.849 7.655 11.412 1 91.59 ? C2 7DG 101 V 1 HETATM 9 N N2 7DG . . . B 2 -35.54 8.424 12.258 1 80.82 ? N2 7DG 101 V 1 HETATM 10 N N3 7DG . . . B 2 -33.846 6.904 11.871 1 88.89 ? N3 7DG 101 V 1 HETATM 11 C C4 7DG . . . B 2 -33.217 6.156 10.962 1 85.62 ? C4 7DG 101 V 1 HETATM 12 H H8 7DG . . . B 2 -31.058 4.115 10.192 1 95.85 ? H8 7DG 101 V 1 HETATM 13 H H71 7DG . . . B 2 -33.028 4.406 8.554 1 95.82 ? H71 7DG 101 V 1 HETATM 14 H H72 7DG . . . B 2 -32.011 5.601 8.303 1 95.82 ? H72 7DG 101 V 1 HETATM 15 H HN1 7DG . . . B 2 -35.907 8.202 9.858 1 115.28 ? HN1 7DG 101 V 1 HETATM 16 H HN21 7DG . . . B 2 -36.204 8.915 11.961 1 96.98 ? HN21 7DG 101 V 1 HETATM 17 H HN22 7DG . . . B 2 -35.329 8.438 13.109 1 96.98 ? HN22 7DG 101 V 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 17 #