data_7WIF # _model_server_result.job_id Y7MEzfYRHKZYc29ncGxbKg _model_server_result.datetime_utc '2025-01-25 15:32:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wif # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 7WIF # _exptl.entry_id 7WIF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.247 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,6,7,8-TETRAHYDROBIOPTERIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7WIF _cell.length_a 66.226 _cell.length_b 66.226 _cell.length_c 92.793 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WIF _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' GTP 1 V GTP 6 1_555 A P G 2 V G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.6 ? hydrog WATSON-CRICK hydrog1 A N1 GTP 1 V GTP 6 1_555 A N3 C 50 V C 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 GTP 1 V GTP 6 1_555 A O2 C 50 V C 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 GTP 1 V GTP 6 1_555 A N4 C 50 V C 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 G 2 V G 7 1_555 A N3 C 49 V C 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 G 2 V G 7 1_555 A O2 C 49 V C 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 G 2 V G 7 1_555 A N4 C 49 V C 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 C 3 V C 8 1_555 A N1 G 48 V G 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 C 3 V C 8 1_555 A O6 G 48 V G 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 C 3 V C 8 1_555 A N2 G 48 V G 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 G 4 V G 9 1_555 A N3 C 47 V C 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 G 4 V G 9 1_555 A O2 C 47 V C 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 G 4 V G 9 1_555 A N4 C 47 V C 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 U 5 V U 10 1_555 A N1 A 46 V A 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O4 U 5 V U 10 1_555 A N6 A 46 V A 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog15 A N7 G 6 V G 11 1_555 A N2 G 45 V G 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog16 A O6 G 6 V G 11 1_555 A N1 G 45 V G 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog17 A N1 G 7 V G 12 1_555 A N1 A 44 V A 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog18 A O6 G 7 V G 12 1_555 A N6 A 44 V A 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog19 A N3 U 8 V U 13 1_555 A O6 G 43 V G 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog20 A O2 U 8 V U 13 1_555 A N1 G 43 V G 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N3 C 9 V C 14 1_555 A N1 G 42 V G 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N4 C 9 V C 14 1_555 A O6 G 42 V G 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O2 C 9 V C 14 1_555 A N2 G 42 V G 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N3 C 10 V C 15 1_555 A N1 G 41 V G 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N4 C 10 V C 15 1_555 A O6 G 41 V G 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O2 C 10 V C 15 1_555 A N2 G 41 V G 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N1 G 11 V G 16 1_555 A N3 C 40 V C 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N2 G 11 V G 16 1_555 A O2 C 40 V C 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A O6 G 11 V G 16 1_555 A N4 C 40 V C 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'U-A PAIR' hydrog30 A O2 U 12 V U 17 1_555 A N6 A 15 V A 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N3 U 12 V U 17 1_555 A N1 A 39 V A 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A O4 U 12 V U 17 1_555 A N6 A 39 V A 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-C MISPAIR' hydrog33 A N6 A 15 V A 20 1_555 A O2 C 40 V C 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-A MISPAIR' hydrog34 A N6 A 16 V A 21 1_555 A N3 A 39 V A 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 A N1 G 20 V G 25 1_555 A N3 C 37 V C 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 A N2 G 20 V G 25 1_555 A O2 C 37 V C 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 A O6 G 20 V G 25 1_555 A N4 C 37 V C 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 A N3 U 21 V U 26 1_555 A N1 A 36 V A 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 A O4 U 21 V U 26 1_555 A N6 A 36 V A 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 A N3 U 22 V U 27 1_555 A N1 A 35 V A 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 A O4 U 22 V U 27 1_555 A N6 A 35 V A 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 A N3 C 23 V C 28 1_555 A N1 G 34 V G 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 A N4 C 23 V C 28 1_555 A O6 G 34 V G 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog44 A O2 C 23 V C 28 1_555 A N2 G 34 V G 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog45 A N3 C 24 V C 29 1_555 A N1 G 33 V G 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog46 A N4 C 24 V C 29 1_555 A O6 G 33 V G 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog47 A O2 C 24 V C 29 1_555 A N2 G 33 V G 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog48 A N3 U 25 V U 30 1_555 A N1 A 32 V A 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog49 A O4 U 25 V U 30 1_555 A N6 A 32 V A 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog50 A N3 C 26 V C 31 1_555 A N1 G 31 V G 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog51 A N4 C 26 V C 31 1_555 A O6 G 31 V G 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog52 A O2 C 26 V C 31 1_555 A N2 G 31 V G 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-A MISPAIR' hydrog53 A N2 G 27 V G 32 1_555 A N7 A 30 V A 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C9 H15 N5 O3' _chem_comp.formula_weight 241.247 _chem_comp.id H4B _chem_comp.mon_nstd_flag . _chem_comp.name 5,6,7,8-TETRAHYDROBIOPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 H4B doub 166 n y N1 C8A H4B sing 167 n y C2 N2 H4B sing 168 n n C2 N3 H4B sing 169 n y N2 HN21 H4B sing 170 n n N2 HN22 H4B sing 171 n n N3 C4 H4B sing 172 n y N3 HN3 H4B sing 173 n n C4 O4 H4B doub 174 n n C4 C4A H4B sing 175 n y C4A C8A H4B doub 176 n y C4A N5 H4B sing 177 n n C8A N8 H4B sing 178 n n N5 C6 H4B sing 179 n n N5 HN5 H4B sing 180 n n N8 C7 H4B sing 181 n n N8 HN8 H4B sing 182 n n C6 C7 H4B sing 183 n n C6 C9 H4B sing 184 n n C6 H6 H4B sing 185 n n C7 H71 H4B sing 186 n n C7 H72 H4B sing 187 n n C9 O9 H4B sing 188 n n C9 C10 H4B sing 189 n n C9 H9 H4B sing 190 n n O9 HO9 H4B sing 191 n n C10 C11 H4B sing 192 n n C10 O10 H4B sing 193 n n C10 H10 H4B sing 194 n n C11 H111 H4B sing 195 n n C11 H112 H4B sing 196 n n C11 H113 H4B sing 197 n n O10 HO0 H4B sing 198 n n # _atom_sites.entry_id 7WIF _atom_sites.fract_transf_matrix[1][1] 0.0151 _atom_sites.fract_transf_matrix[1][2] 0.008718 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017436 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010777 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id H4B _pdbx_nonpoly_scheme.pdb_strand_id V _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 101 _pdbx_nonpoly_scheme.pdb_mon_id H4B _pdbx_nonpoly_scheme.auth_mon_id H4B _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H4B . . . B 2 22.472 25.731 27.33 1 68.08 ? N1 H4B 101 V 1 HETATM 2 C C2 H4B . . . B 2 23.561 26.112 26.672 1 77.25 ? C2 H4B 101 V 1 HETATM 3 N N2 H4B . . . B 2 24.615 26.456 27.409 1 64.46 ? N2 H4B 101 V 1 HETATM 4 N N3 H4B . . . B 2 23.711 26.171 25.313 1 75.71 ? N3 H4B 101 V 1 HETATM 5 C C4 H4B . . . B 2 22.666 25.829 24.556 1 76.49 ? C4 H4B 101 V 1 HETATM 6 O O4 H4B . . . B 2 22.862 25.895 23.332 1 77.67 ? O4 H4B 101 V 1 HETATM 7 C C4A H4B . . . B 2 21.459 25.416 25.15 1 70.42 ? C4A H4B 101 V 1 HETATM 8 C C8A H4B . . . B 2 21.431 25.41 26.553 1 72.39 ? C8A H4B 101 V 1 HETATM 9 N N5 H4B . . . B 2 20.38 25.045 24.369 1 65.13 ? N5 H4B 101 V 1 HETATM 10 N N8 H4B . . . B 2 20.294 25.024 27.153 1 77.38 ? N8 H4B 101 V 1 HETATM 11 C C6 H4B . . . B 2 19.219 24.442 25.015 1 59.15 ? C6 H4B 101 V 1 HETATM 12 C C7 H4B . . . B 2 19.076 25.077 26.388 1 84.91 ? C7 H4B 101 V 1 HETATM 13 C C9 H4B . . . B 2 19.377 22.899 25.061 1 100.18 ? C9 H4B 101 V 1 HETATM 14 O O9 H4B . . . B 2 20.643 22.573 25.639 0 90.21 ? O9 H4B 101 V 1 HETATM 15 C C10 H4B . . . B 2 18.251 22.184 25.879 0 83.71 ? C10 H4B 101 V 1 HETATM 16 C C11 H4B . . . B 2 18.418 20.694 25.894 0 83.15 ? C11 H4B 101 V 1 HETATM 17 O O10 H4B . . . B 2 16.99 22.527 25.309 0 82.94 ? O10 H4B 101 V 1 HETATM 18 H HN21 H4B . . . B 2 25.357 26.715 27.019 1 77.43 ? HN21 H4B 101 V 1 HETATM 19 H HN22 H4B . . . B 2 24.568 26.425 28.284 1 77.43 ? HN22 H4B 101 V 1 HETATM 20 H HN3 H4B . . . B 2 24.285 26.751 24.984 1 90.93 ? HN3 H4B 101 V 1 HETATM 21 H HN5 H4B . . . B 2 20.394 25.168 23.525 1 78.23 ? HN5 H4B 101 V 1 HETATM 22 H HN8 H4B . . . B 2 20.295 24.753 27.969 1 92.93 ? HN8 H4B 101 V 1 HETATM 23 H H6 H4B . . . B 2 18.395 24.63 24.5 1 71.06 ? H6 H4B 101 V 1 HETATM 24 H H71 H4B . . . B 2 18.808 26.015 26.279 1 101.96 ? H71 H4B 101 V 1 HETATM 25 H H72 H4B . . . B 2 18.367 24.611 26.883 1 101.96 ? H72 H4B 101 V 1 HETATM 26 H H9 H4B . . . B 2 19.363 22.566 24.127 1 120.29 ? H9 H4B 101 V 1 HETATM 27 H HO9 H4B . . . B 2 21.273 22.801 25.094 0 108.33 ? HO9 H4B 101 V 1 HETATM 28 H H10 H4B . . . B 2 18.263 22.526 26.811 1 100.53 ? H10 H4B 101 V 1 HETATM 29 H H111 H4B . . . B 2 17.659 20.287 26.346 0 99.86 ? H111 H4B 101 V 1 HETATM 30 H H112 H4B . . . B 2 19.236 20.464 26.366 0 99.86 ? H112 H4B 101 V 1 HETATM 31 H H113 H4B . . . B 2 18.467 20.363 24.982 0 99.86 ? H113 H4B 101 V 1 HETATM 32 H HO0 H4B . . . B 2 16.842 23.369 25.434 0 99.61 ? HO0 H4B 101 V 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 32 #