data_7WIG # _model_server_result.job_id xwLMUmQtbHBa76U9okOHbA _model_server_result.datetime_utc '2024-10-11 00:26:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wig # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 7WIG # _exptl.entry_id 7WIG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 539.711 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "~{N}-[(2~{R})-1-[[(1~{R},3~{S})-3-(aminomethyl)cyclohexyl]methylamino]-3-(1~{H}-indol-3-yl)-1-oxidanylidene-propan-2-yl]spiro[indene-1,4'-piperidine]-1'-carboxamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WIG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WIG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 115 R CYS 115 1_555 A SG CYS 193 R CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 E SG CYS 22 S CYS 22 1_555 E SG CYS 96 S CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 E SG CYS 159 S CYS 159 1_555 E SG CYS 229 S CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? # _chem_comp.formula 'C33 H41 N5 O2' _chem_comp.formula_weight 539.711 _chem_comp.id 9FI _chem_comp.mon_nstd_flag . _chem_comp.name "~{N}-[(2~{R})-1-[[(1~{R},3~{S})-3-(aminomethyl)cyclohexyl]methylamino]-3-(1~{H}-indol-3-yl)-1-oxidanylidene-propan-2-yl]spiro[indene-1,4'-piperidine]-1'-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C32 C33 9FI doub 1 n y C32 C30 9FI sing 2 n y C33 C31 9FI sing 3 n y N4 C15 9FI sing 4 n n C30 C27 9FI doub 5 n y C15 C3 9FI sing 6 n n C31 C29 9FI doub 7 n y C27 C29 9FI sing 8 n y C27 C26 9FI sing 9 n y C29 N5 9FI sing 10 n y O2 C22 9FI doub 11 n n C3 C4 9FI sing 12 n n C3 C8 9FI sing 13 n n C4 C2 9FI sing 14 n n C11 C5 9FI sing 15 n n C11 N1 9FI sing 16 n n C5 C1 9FI sing 17 n n C26 C24 9FI sing 18 n n C26 C28 9FI doub 19 n y C24 C20 9FI sing 20 n n C8 C9 9FI sing 21 n n C22 C20 9FI sing 22 n n C22 N2 9FI sing 23 n n N5 C28 9FI sing 24 n y N3 C20 9FI sing 25 n n N3 C19 9FI sing 26 n n C13 C2 9FI sing 27 n n C13 N2 9FI sing 28 n n C2 C7 9FI sing 29 n n N1 C19 9FI sing 30 n n N1 C12 9FI sing 31 n n C18 C23 9FI sing 32 n y C18 C10 9FI doub 33 n y C1 C10 9FI sing 34 n n C1 C14 9FI sing 35 n n C1 C6 9FI sing 36 n n C23 C25 9FI doub 37 n y C10 C16 9FI sing 38 n y C19 O1 9FI doub 39 n n C9 C7 9FI sing 40 n n C25 C21 9FI sing 41 n y C14 C17 9FI doub 42 n n C16 C21 9FI doub 43 n y C16 C17 9FI sing 44 n n C12 C6 9FI sing 45 n n C3 H1 9FI sing 46 n n C4 H2 9FI sing 47 n n C4 H3 9FI sing 48 n n C5 H4 9FI sing 49 n n C5 H5 9FI sing 50 n n C6 H6 9FI sing 51 n n C6 H7 9FI sing 52 n n C8 H8 9FI sing 53 n n C8 H9 9FI sing 54 n n C9 H10 9FI sing 55 n n C9 H11 9FI sing 56 n n C13 H12 9FI sing 57 n n C13 H13 9FI sing 58 n n C14 H14 9FI sing 59 n n C15 H15 9FI sing 60 n n C15 H16 9FI sing 61 n n C17 H17 9FI sing 62 n n C18 H18 9FI sing 63 n n C20 H19 9FI sing 64 n n C23 H20 9FI sing 65 n n C24 H21 9FI sing 66 n n C24 H22 9FI sing 67 n n C25 H23 9FI sing 68 n n C28 H24 9FI sing 69 n n C11 H25 9FI sing 70 n n C11 H26 9FI sing 71 n n C12 H27 9FI sing 72 n n C12 H28 9FI sing 73 n n C2 H29 9FI sing 74 n n C21 H30 9FI sing 75 n n C30 H31 9FI sing 76 n n C31 H32 9FI sing 77 n n C32 H33 9FI sing 78 n n C33 H34 9FI sing 79 n n C7 H35 9FI sing 80 n n C7 H36 9FI sing 81 n n N2 H37 9FI sing 82 n n N3 H38 9FI sing 83 n n N4 H39 9FI sing 84 n n N4 H40 9FI sing 85 n n N5 H42 9FI sing 86 n n # _atom_sites.entry_id 7WIG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id F _pdbx_nonpoly_scheme.entity_id 6 _pdbx_nonpoly_scheme.mon_id 9FI _pdbx_nonpoly_scheme.pdb_strand_id R _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id 9FI _pdbx_nonpoly_scheme.auth_mon_id L05 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 9FI . . . F 6 91.328 135.854 118.977 1 55.78 ? C1 9FI 401 R 1 HETATM 2 O O2 9FI . . . F 6 93.442 129.023 116.891 1 55.78 ? O2 9FI 401 R 1 HETATM 3 C C3 9FI . . . F 6 91.281 124.969 117.032 1 55.78 ? C3 9FI 401 R 1 HETATM 4 C C4 9FI . . . F 6 91.244 126.42 117.179 1 55.78 ? C4 9FI 401 R 1 HETATM 5 C C5 9FI . . . F 6 91.329 135.192 117.582 1 55.78 ? C5 9FI 401 R 1 HETATM 6 C C6 9FI . . . F 6 91.054 134.806 120.078 1 55.78 ? C6 9FI 401 R 1 HETATM 7 C C8 9FI . . . F 6 92.459 124.5 117.716 1 55.78 ? C8 9FI 401 R 1 HETATM 8 C C9 9FI . . . F 6 92.46 124.96 119.127 1 55.78 ? C9 9FI 401 R 1 HETATM 9 C C10 9FI . . . F 6 90.37 136.961 119.066 1 55.78 ? C10 9FI 401 R 1 HETATM 10 C C13 9FI . . . F 6 91.25 128.432 118.383 1 55.78 ? C13 9FI 401 R 1 HETATM 11 C C14 9FI . . . F 6 92.548 136.598 119.244 1 55.78 ? C14 9FI 401 R 1 HETATM 12 C C15 9FI . . . F 6 91.395 124.636 115.562 1 55.78 ? C15 9FI 401 R 1 HETATM 13 C C16 9FI . . . F 6 90.988 138.166 119.314 1 55.78 ? C16 9FI 401 R 1 HETATM 14 C C17 9FI . . . F 6 92.416 137.916 119.428 1 55.78 ? C17 9FI 401 R 1 HETATM 15 C C18 9FI . . . F 6 89.034 137.058 118.895 1 55.78 ? C18 9FI 401 R 1 HETATM 16 C C19 9FI . . . F 6 93.4 131.932 119.115 1 55.78 ? C19 9FI 401 R 1 HETATM 17 C C20 9FI . . . F 6 94.809 130.063 118.547 1 55.78 ? C20 9FI 401 R 1 HETATM 18 C C22 9FI . . . F 6 93.542 129.315 118.052 1 55.78 ? C22 9FI 401 R 1 HETATM 19 C C23 9FI . . . F 6 88.332 138.218 118.997 1 55.78 ? C23 9FI 401 R 1 HETATM 20 C C24 9FI . . . F 6 95.878 129.715 117.619 1 55.78 ? C24 9FI 401 R 1 HETATM 21 C C25 9FI . . . F 6 88.997 139.394 119.238 1 55.78 ? C25 9FI 401 R 1 HETATM 22 C C26 9FI . . . F 6 95.942 128.321 117.607 1 55.78 ? C26 9FI 401 R 1 HETATM 23 C C27 9FI . . . F 6 96.308 127.59 116.497 1 55.78 ? C27 9FI 401 R 1 HETATM 24 C C28 9FI . . . F 6 95.616 127.418 118.545 1 55.78 ? C28 9FI 401 R 1 HETATM 25 C C29 9FI . . . F 6 96.241 126.267 116.794 1 55.78 ? C29 9FI 401 R 1 HETATM 26 C C11 9FI . . . F 6 92.218 133.947 117.528 1 55.78 ? C11 9FI 401 R 1 HETATM 27 C C12 9FI . . . F 6 91.959 133.58 119.945 1 55.78 ? C12 9FI 401 R 1 HETATM 28 C C2 9FI . . . F 6 91.201 126.971 118.512 1 55.78 ? C2 9FI 401 R 1 HETATM 29 C C21 9FI . . . F 6 90.372 139.375 119.414 1 55.78 ? C21 9FI 401 R 1 HETATM 30 C C30 9FI . . . F 6 96.688 128.016 115.316 1 55.78 ? C30 9FI 401 R 1 HETATM 31 C C31 9FI . . . F 6 96.573 125.373 115.83 1 55.78 ? C31 9FI 401 R 1 HETATM 32 C C32 9FI . . . F 6 97.029 127.143 114.362 1 55.78 ? C32 9FI 401 R 1 HETATM 33 C C33 9FI . . . F 6 96.969 125.811 114.629 1 55.78 ? C33 9FI 401 R 1 HETATM 34 C C7 9FI . . . F 6 92.424 126.452 119.164 1 55.78 ? C7 9FI 401 R 1 HETATM 35 N N1 9FI . . . F 6 92.559 133.13 118.826 1 55.78 ? N1 9FI 401 R 1 HETATM 36 N N2 9FI . . . F 6 92.437 129.066 118.813 1 55.78 ? N2 9FI 401 R 1 HETATM 37 N N3 9FI . . . F 6 94.164 131.185 118.222 1 55.78 ? N3 9FI 401 R 1 HETATM 38 N N4 9FI . . . F 6 92.344 123.625 115.244 1 55.78 ? N4 9FI 401 R 1 HETATM 39 N N5 9FI . . . F 6 95.811 126.127 118.079 1 55.78 ? N5 9FI 401 R 1 HETATM 40 O O1 9FI . . . F 6 93.484 131.507 120.262 1 55.78 ? O1 9FI 401 R 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 40 #