data_7WII # _model_server_result.job_id R7S0ZA6ybmj4hcczSgz4Qg _model_server_result.datetime_utc '2025-01-25 11:52:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wii # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 7WII # _exptl.entry_id 7WII _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 255.231 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-7,8-DIHYDRO-6-(1,2,3-TRIHYDROXYPROPYL)-4(1H)-PTERIDINONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7WII _cell.length_a 66.605 _cell.length_b 66.605 _cell.length_c 93.06 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WII _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' GTP 1 V GTP 6 1_555 A P G 2 V G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.599 ? hydrog WATSON-CRICK hydrog1 A N1 GTP 1 V GTP 6 1_555 A N3 C 50 V C 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 GTP 1 V GTP 6 1_555 A O2 C 50 V C 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 GTP 1 V GTP 6 1_555 A N4 C 50 V C 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 G 2 V G 7 1_555 A N3 C 49 V C 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 G 2 V G 7 1_555 A O2 C 49 V C 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 G 2 V G 7 1_555 A N4 C 49 V C 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 C 3 V C 8 1_555 A N1 G 48 V G 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 C 3 V C 8 1_555 A O6 G 48 V G 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 C 3 V C 8 1_555 A N2 G 48 V G 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 G 4 V G 9 1_555 A N3 C 47 V C 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 G 4 V G 9 1_555 A O2 C 47 V C 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 G 4 V G 9 1_555 A N4 C 47 V C 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 U 5 V U 10 1_555 A N1 A 46 V A 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O4 U 5 V U 10 1_555 A N6 A 46 V A 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog15 A N7 G 6 V G 11 1_555 A N2 G 45 V G 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog16 A O6 G 6 V G 11 1_555 A N1 G 45 V G 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog17 A N1 G 7 V G 12 1_555 A N1 A 44 V A 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog18 A O6 G 7 V G 12 1_555 A N6 A 44 V A 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog19 A N3 U 8 V U 13 1_555 A O6 G 43 V G 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog20 A O2 U 8 V U 13 1_555 A N1 G 43 V G 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N3 C 9 V C 14 1_555 A N1 G 42 V G 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N4 C 9 V C 14 1_555 A O6 G 42 V G 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O2 C 9 V C 14 1_555 A N2 G 42 V G 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N3 C 10 V C 15 1_555 A N1 G 41 V G 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N4 C 10 V C 15 1_555 A O6 G 41 V G 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O2 C 10 V C 15 1_555 A N2 G 41 V G 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N1 G 11 V G 16 1_555 A N3 C 40 V C 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N2 G 11 V G 16 1_555 A O2 C 40 V C 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A O6 G 11 V G 16 1_555 A N4 C 40 V C 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'U-A PAIR' hydrog30 A O2 U 12 V U 17 1_555 A N6 A 15 V A 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N3 U 12 V U 17 1_555 A N1 A 39 V A 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A O4 U 12 V U 17 1_555 A N6 A 39 V A 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-C MISPAIR' hydrog33 A N6 A 15 V A 20 1_555 A O2 C 40 V C 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-A MISPAIR' hydrog34 A N6 A 16 V A 21 1_555 A N3 A 39 V A 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 A N1 G 20 V G 25 1_555 A N3 C 37 V C 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 A N2 G 20 V G 25 1_555 A O2 C 37 V C 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 A O6 G 20 V G 25 1_555 A N4 C 37 V C 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 A N3 U 21 V U 26 1_555 A N1 A 36 V A 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 A O4 U 21 V U 26 1_555 A N6 A 36 V A 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 A N3 U 22 V U 27 1_555 A N1 A 35 V A 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 A O4 U 22 V U 27 1_555 A N6 A 35 V A 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 A N3 C 23 V C 28 1_555 A N1 G 34 V G 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 A N4 C 23 V C 28 1_555 A O6 G 34 V G 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog44 A O2 C 23 V C 28 1_555 A N2 G 34 V G 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog45 A N3 C 24 V C 29 1_555 A N1 G 33 V G 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog46 A N4 C 24 V C 29 1_555 A O6 G 33 V G 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog47 A O2 C 24 V C 29 1_555 A N2 G 33 V G 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog48 A N3 U 25 V U 30 1_555 A N1 A 32 V A 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog49 A O4 U 25 V U 30 1_555 A N6 A 32 V A 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog50 A N3 C 26 V C 31 1_555 A N1 G 31 V G 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog51 A N4 C 26 V C 31 1_555 A O6 G 31 V G 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog52 A O2 C 26 V C 31 1_555 A N2 G 31 V G 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-A MISPAIR' hydrog53 A N2 G 27 V G 32 1_555 A N7 A 30 V A 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C9 H13 N5 O4' _chem_comp.formula_weight 255.231 _chem_comp.id NPR _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-7,8-DIHYDRO-6-(1,2,3-TRIHYDROXYPROPYL)-4(1H)-PTERIDINONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 7,8-DIHYDRONEOPTERIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 NPR sing 166 n n N1 HN11 NPR sing 167 n n N1 HN12 NPR sing 168 n n C2 N3 NPR doub 169 n y C2 N12 NPR sing 170 n y N3 C4 NPR sing 171 n y C4 O5 NPR doub 172 n n C4 C6 NPR sing 173 n y C6 N7 NPR sing 174 n n C6 C11 NPR doub 175 n y N7 C8 NPR doub 176 n n C8 C9 NPR sing 177 n n C8 C13 NPR sing 178 n n C9 N10 NPR sing 179 n n C9 H91 NPR sing 180 n n C9 H92 NPR sing 181 n n N10 C11 NPR sing 182 n n N10 H10 NPR sing 183 n n C11 N12 NPR sing 184 n y N12 H12 NPR sing 185 n n C13 O14 NPR sing 186 n n C13 C15 NPR sing 187 n n C13 H13 NPR sing 188 n n O14 H14 NPR sing 189 n n C15 O16 NPR sing 190 n n C15 C17 NPR sing 191 n n C15 H15 NPR sing 192 n n O16 H16 NPR sing 193 n n C17 O18 NPR sing 194 n n C17 H171 NPR sing 195 n n C17 H172 NPR sing 196 n n O18 H18 NPR sing 197 n n # _atom_sites.entry_id 7WII _atom_sites.fract_transf_matrix[1][1] 0.015014 _atom_sites.fract_transf_matrix[1][2] 0.008668 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017337 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010746 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id NPR _pdbx_nonpoly_scheme.pdb_strand_id V _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 101 _pdbx_nonpoly_scheme.pdb_mon_id NPR _pdbx_nonpoly_scheme.auth_mon_id NPR _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NPR . . . B 2 22.899 -22.602 -3.148 1 73.3 ? N1 NPR 101 V 1 HETATM 2 C C2 NPR . . . B 2 22.682 -23.544 -4.08 1 86.65 ? C2 NPR 101 V 1 HETATM 3 N N3 NPR . . . B 2 22.736 -23.22 -5.383 1 93.87 ? N3 NPR 101 V 1 HETATM 4 C C4 NPR . . . B 2 22.511 -24.199 -6.252 1 84.68 ? C4 NPR 101 V 1 HETATM 5 O O5 NPR . . . B 2 22.552 -23.908 -7.444 1 91.42 ? O5 NPR 101 V 1 HETATM 6 C C6 NPR . . . B 2 22.227 -25.558 -5.868 1 77.99 ? C6 NPR 101 V 1 HETATM 7 N N7 NPR . . . B 2 22.001 -26.57 -6.783 1 98.26 ? N7 NPR 101 V 1 HETATM 8 C C8 NPR . . . B 2 21.821 -27.76 -6.345 1 84.06 ? C8 NPR 101 V 1 HETATM 9 C C9 NPR . . . B 2 21.266 -27.955 -4.955 1 75.24 ? C9 NPR 101 V 1 HETATM 10 N N10 NPR . . . B 2 21.944 -27.028 -4.066 1 71.23 ? N10 NPR 101 V 1 HETATM 11 C C11 NPR . . . B 2 22.201 -25.789 -4.511 1 68.84 ? C11 NPR 101 V 1 HETATM 12 N N12 NPR . . . B 2 22.425 -24.798 -3.599 1 68.99 ? N12 NPR 101 V 1 HETATM 13 C C13 NPR . . . B 2 22.727 -28.874 -6.824 1 119.98 ? C13 NPR 101 V 1 HETATM 14 O O14 NPR . . . B 2 21.974 -30.06 -6.998 1 104.51 ? O14 NPR 101 V 1 HETATM 15 C C15 NPR . . . B 2 23.954 -29.07 -5.927 1 131.75 ? C15 NPR 101 V 1 HETATM 16 O O16 NPR . . . B 2 24.635 -27.845 -5.818 1 116.47 ? O16 NPR 101 V 1 HETATM 17 C C17 NPR . . . B 2 24.846 -30.177 -6.464 0 104.38 ? C17 NPR 101 V 1 HETATM 18 O O18 NPR . . . B 2 26.019 -30.236 -5.685 0.4 101.45 ? O18 NPR 101 V 1 HETATM 19 H HN11 NPR . . . B 2 22.412 -22.617 -2.404 1 89.4 ? HN11 NPR 101 V 1 HETATM 20 H HN12 NPR . . . B 2 23.511 -21.962 -3.237 1 89.4 ? HN12 NPR 101 V 1 HETATM 21 H H91 NPR . . . B 2 21.407 -28.861 -4.64 1 91.73 ? H91 NPR 101 V 1 HETATM 22 H H92 NPR . . . B 2 20.312 -27.786 -4.927 1 91.73 ? H92 NPR 101 V 1 HETATM 23 H H10 NPR . . . B 2 22.41 -27.363 -3.386 1 86.92 ? H10 NPR 101 V 1 HETATM 24 H H12 NPR . . . B 2 22.085 -24.879 -2.813 1 84.23 ? H12 NPR 101 V 1 HETATM 25 H H13 NPR . . . B 2 23.031 -28.644 -7.717 1 145.42 ? H13 NPR 101 V 1 HETATM 26 H H14 NPR . . . B 2 21.215 -29.85 -7.314 1 126.85 ? H14 NPR 101 V 1 HETATM 27 H H15 NPR . . . B 2 23.673 -29.304 -5.029 1 159.54 ? H15 NPR 101 V 1 HETATM 28 H H16 NPR . . . B 2 24.794 -27.562 -6.603 1 141.21 ? H16 NPR 101 V 1 HETATM 29 H H171 NPR . . . B 2 25.049 -29.999 -7.396 1 126.69 ? H171 NPR 101 V 1 HETATM 30 H H172 NPR . . . B 2 24.361 -31.017 -6.439 1 126.69 ? H172 NPR 101 V 1 HETATM 31 H H18 NPR . . . B 2 26.246 -29.441 -5.491 1 123.19 ? H18 NPR 101 V 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #