data_7WJ3 # _model_server_result.job_id yupKDo-lF9eTV2JX1finTQ _model_server_result.datetime_utc '2024-11-27 21:43:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wj3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 7WJ3 # _exptl.entry_id 7WJ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 18 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 120.934 _cell.angle_gamma 90 _cell.entry_id 7WJ3 _cell.length_a 91.05 _cell.length_b 77.508 _cell.length_c 60.637 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WJ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N ? 4 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 102 A CYS 101 1_555 A SG CYS 165 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 204 A CYS 203 1_555 A SG CYS 260 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 C N GLY 1 C GLY 2 1_555 V C1 MYR . C MYR 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7WJ3 _atom_sites.fract_transf_matrix[1][1] 0.010983 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006582 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012902 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019226 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 EDO A 1 301 301 EDO EDO . E 4 EDO A 1 302 302 EDO EDO . F 4 EDO A 1 303 303 EDO EDO . G 4 EDO A 1 304 304 EDO EDO . H 4 EDO A 1 305 305 EDO EDO . I 4 EDO A 1 306 306 EDO EDO . J 4 EDO A 1 307 307 EDO EDO . K 4 EDO A 1 308 308 EDO EDO . L 4 EDO A 1 309 309 EDO EDO . M 4 EDO A 1 310 310 EDO EDO . N 4 EDO B 1 101 101 EDO EDO . O 4 EDO B 1 102 102 EDO EDO . P 4 EDO B 1 103 103 EDO EDO . Q 4 EDO B 1 104 104 EDO EDO . R 4 EDO B 1 105 105 EDO EDO . S 4 EDO B 1 106 106 EDO EDO . T 4 EDO B 1 107 107 EDO EDO . U 4 EDO B 1 108 108 EDO EDO . V 5 MYR C 1 101 101 MYR MYR . W 6 HOH A 1 401 401 HOH HOH . W 6 HOH A 2 402 402 HOH HOH . W 6 HOH A 3 403 403 HOH HOH . W 6 HOH A 4 404 404 HOH HOH . W 6 HOH A 5 405 405 HOH HOH . W 6 HOH A 6 406 406 HOH HOH . W 6 HOH A 7 407 407 HOH HOH . W 6 HOH A 8 408 408 HOH HOH . W 6 HOH A 9 409 409 HOH HOH . W 6 HOH A 10 410 410 HOH HOH . W 6 HOH A 11 411 411 HOH HOH . W 6 HOH A 12 412 412 HOH HOH . W 6 HOH A 13 413 413 HOH HOH . W 6 HOH A 14 414 414 HOH HOH . W 6 HOH A 15 415 415 HOH HOH . W 6 HOH A 16 416 416 HOH HOH . W 6 HOH A 17 417 417 HOH HOH . W 6 HOH A 18 418 418 HOH HOH . W 6 HOH A 19 419 419 HOH HOH . W 6 HOH A 20 420 420 HOH HOH . W 6 HOH A 21 421 421 HOH HOH . W 6 HOH A 22 422 422 HOH HOH . W 6 HOH A 23 423 423 HOH HOH . W 6 HOH A 24 424 424 HOH HOH . W 6 HOH A 25 425 425 HOH HOH . W 6 HOH A 26 426 426 HOH HOH . W 6 HOH A 27 427 427 HOH HOH . W 6 HOH A 28 428 428 HOH HOH . W 6 HOH A 29 429 429 HOH HOH . W 6 HOH A 30 430 430 HOH HOH . W 6 HOH A 31 431 431 HOH HOH . W 6 HOH A 32 432 432 HOH HOH . W 6 HOH A 33 433 433 HOH HOH . W 6 HOH A 34 434 434 HOH HOH . W 6 HOH A 35 435 435 HOH HOH . W 6 HOH A 36 436 436 HOH HOH . W 6 HOH A 37 437 437 HOH HOH . W 6 HOH A 38 438 438 HOH HOH . W 6 HOH A 39 439 439 HOH HOH . W 6 HOH A 40 440 440 HOH HOH . W 6 HOH A 41 441 441 HOH HOH . W 6 HOH A 42 442 442 HOH HOH . W 6 HOH A 43 443 443 HOH HOH . W 6 HOH A 44 444 444 HOH HOH . W 6 HOH A 45 445 445 HOH HOH . W 6 HOH A 46 446 446 HOH HOH . W 6 HOH A 47 447 447 HOH HOH . W 6 HOH A 48 448 448 HOH HOH . W 6 HOH A 49 449 449 HOH HOH . W 6 HOH A 50 450 450 HOH HOH . W 6 HOH A 51 451 451 HOH HOH . W 6 HOH A 52 452 452 HOH HOH . W 6 HOH A 53 453 453 HOH HOH . W 6 HOH A 54 454 454 HOH HOH . W 6 HOH A 55 455 455 HOH HOH . W 6 HOH A 56 456 456 HOH HOH . W 6 HOH A 57 457 457 HOH HOH . W 6 HOH A 58 458 458 HOH HOH . W 6 HOH A 59 459 459 HOH HOH . W 6 HOH A 60 460 460 HOH HOH . W 6 HOH A 61 461 461 HOH HOH . W 6 HOH A 62 462 462 HOH HOH . W 6 HOH A 63 463 463 HOH HOH . W 6 HOH A 64 464 464 HOH HOH . W 6 HOH A 65 465 465 HOH HOH . W 6 HOH A 66 466 466 HOH HOH . W 6 HOH A 67 467 467 HOH HOH . W 6 HOH A 68 468 468 HOH HOH . W 6 HOH A 69 469 469 HOH HOH . W 6 HOH A 70 470 470 HOH HOH . W 6 HOH A 71 471 471 HOH HOH . W 6 HOH A 72 472 472 HOH HOH . W 6 HOH A 73 473 473 HOH HOH . W 6 HOH A 74 474 474 HOH HOH . W 6 HOH A 75 475 475 HOH HOH . W 6 HOH A 76 476 476 HOH HOH . W 6 HOH A 77 477 477 HOH HOH . W 6 HOH A 78 478 478 HOH HOH . W 6 HOH A 79 479 479 HOH HOH . W 6 HOH A 80 480 480 HOH HOH . W 6 HOH A 81 481 481 HOH HOH . W 6 HOH A 82 482 482 HOH HOH . W 6 HOH A 83 483 483 HOH HOH . W 6 HOH A 84 484 484 HOH HOH . W 6 HOH A 85 485 485 HOH HOH . W 6 HOH A 86 486 486 HOH HOH . W 6 HOH A 87 487 487 HOH HOH . W 6 HOH A 88 488 488 HOH HOH . W 6 HOH A 89 489 489 HOH HOH . W 6 HOH A 90 490 490 HOH HOH . W 6 HOH A 91 491 491 HOH HOH . W 6 HOH A 92 492 492 HOH HOH . W 6 HOH A 93 493 493 HOH HOH . W 6 HOH A 94 494 494 HOH HOH . W 6 HOH A 95 495 495 HOH HOH . W 6 HOH A 96 496 496 HOH HOH . W 6 HOH A 97 497 497 HOH HOH . W 6 HOH A 98 498 498 HOH HOH . W 6 HOH A 99 499 499 HOH HOH . W 6 HOH A 100 500 500 HOH HOH . W 6 HOH A 101 501 501 HOH HOH . W 6 HOH A 102 502 502 HOH HOH . W 6 HOH A 103 503 503 HOH HOH . W 6 HOH A 104 504 504 HOH HOH . W 6 HOH A 105 505 505 HOH HOH . W 6 HOH A 106 506 506 HOH HOH . W 6 HOH A 107 507 507 HOH HOH . W 6 HOH A 108 508 508 HOH HOH . W 6 HOH A 109 509 509 HOH HOH . W 6 HOH A 110 510 510 HOH HOH . W 6 HOH A 111 511 511 HOH HOH . W 6 HOH A 112 512 512 HOH HOH . W 6 HOH A 113 513 513 HOH HOH . W 6 HOH A 114 514 514 HOH HOH . W 6 HOH A 115 515 515 HOH HOH . W 6 HOH A 116 516 516 HOH HOH . W 6 HOH A 117 517 517 HOH HOH . W 6 HOH A 118 518 518 HOH HOH . W 6 HOH A 119 519 519 HOH HOH . W 6 HOH A 120 520 520 HOH HOH . W 6 HOH A 121 521 521 HOH HOH . W 6 HOH A 122 522 522 HOH HOH . W 6 HOH A 123 523 523 HOH HOH . W 6 HOH A 124 524 524 HOH HOH . W 6 HOH A 125 525 525 HOH HOH . W 6 HOH A 126 526 526 HOH HOH . W 6 HOH A 127 527 527 HOH HOH . W 6 HOH A 128 528 528 HOH HOH . W 6 HOH A 129 529 529 HOH HOH . W 6 HOH A 130 530 530 HOH HOH . W 6 HOH A 131 531 531 HOH HOH . W 6 HOH A 132 532 532 HOH HOH . W 6 HOH A 133 533 533 HOH HOH . W 6 HOH A 134 534 534 HOH HOH . W 6 HOH A 135 535 535 HOH HOH . W 6 HOH A 136 536 536 HOH HOH . W 6 HOH A 137 537 537 HOH HOH . W 6 HOH A 138 538 538 HOH HOH . W 6 HOH A 139 539 539 HOH HOH . W 6 HOH A 140 540 540 HOH HOH . W 6 HOH A 141 541 541 HOH HOH . W 6 HOH A 142 542 542 HOH HOH . W 6 HOH A 143 543 543 HOH HOH . W 6 HOH A 144 544 544 HOH HOH . W 6 HOH A 145 545 545 HOH HOH . W 6 HOH A 146 546 546 HOH HOH . W 6 HOH A 147 547 547 HOH HOH . W 6 HOH A 148 548 548 HOH HOH . W 6 HOH A 149 549 549 HOH HOH . W 6 HOH A 150 550 550 HOH HOH . X 6 HOH B 1 201 201 HOH HOH . X 6 HOH B 2 202 202 HOH HOH . X 6 HOH B 3 203 203 HOH HOH . X 6 HOH B 4 204 204 HOH HOH . X 6 HOH B 5 205 205 HOH HOH . X 6 HOH B 6 206 206 HOH HOH . X 6 HOH B 7 207 207 HOH HOH . X 6 HOH B 8 208 208 HOH HOH . X 6 HOH B 9 209 209 HOH HOH . X 6 HOH B 10 210 210 HOH HOH . X 6 HOH B 11 211 211 HOH HOH . X 6 HOH B 12 212 212 HOH HOH . X 6 HOH B 13 213 213 HOH HOH . X 6 HOH B 14 214 214 HOH HOH . X 6 HOH B 15 215 215 HOH HOH . X 6 HOH B 16 216 216 HOH HOH . X 6 HOH B 17 217 217 HOH HOH . X 6 HOH B 18 218 218 HOH HOH . X 6 HOH B 19 219 219 HOH HOH . X 6 HOH B 20 220 220 HOH HOH . X 6 HOH B 21 221 221 HOH HOH . X 6 HOH B 22 222 222 HOH HOH . X 6 HOH B 23 223 223 HOH HOH . X 6 HOH B 24 224 224 HOH HOH . X 6 HOH B 25 225 225 HOH HOH . X 6 HOH B 26 226 226 HOH HOH . X 6 HOH B 27 227 227 HOH HOH . X 6 HOH B 28 228 228 HOH HOH . X 6 HOH B 29 229 229 HOH HOH . X 6 HOH B 30 230 230 HOH HOH . X 6 HOH B 31 231 231 HOH HOH . X 6 HOH B 32 232 232 HOH HOH . X 6 HOH B 33 233 233 HOH HOH . X 6 HOH B 34 234 234 HOH HOH . X 6 HOH B 35 235 235 HOH HOH . X 6 HOH B 36 236 236 HOH HOH . X 6 HOH B 37 237 237 HOH HOH . X 6 HOH B 38 238 238 HOH HOH . X 6 HOH B 39 239 239 HOH HOH . X 6 HOH B 40 240 240 HOH HOH . X 6 HOH B 41 241 241 HOH HOH . X 6 HOH B 42 242 242 HOH HOH . X 6 HOH B 43 243 243 HOH HOH . X 6 HOH B 44 244 244 HOH HOH . X 6 HOH B 45 245 245 HOH HOH . X 6 HOH B 46 246 246 HOH HOH . X 6 HOH B 47 247 247 HOH HOH . X 6 HOH B 48 248 248 HOH HOH . X 6 HOH B 49 249 249 HOH HOH . X 6 HOH B 50 250 250 HOH HOH . X 6 HOH B 51 251 251 HOH HOH . X 6 HOH B 52 252 252 HOH HOH . X 6 HOH B 53 253 253 HOH HOH . X 6 HOH B 54 254 254 HOH HOH . X 6 HOH B 55 255 255 HOH HOH . X 6 HOH B 56 256 256 HOH HOH . X 6 HOH B 57 257 257 HOH HOH . X 6 HOH B 58 258 258 HOH HOH . X 6 HOH B 59 259 259 HOH HOH . X 6 HOH B 60 260 260 HOH HOH . X 6 HOH B 61 261 261 HOH HOH . X 6 HOH B 62 262 262 HOH HOH . X 6 HOH B 63 263 263 HOH HOH . X 6 HOH B 64 264 264 HOH HOH . X 6 HOH B 65 265 265 HOH HOH . X 6 HOH B 66 266 266 HOH HOH . X 6 HOH B 67 267 267 HOH HOH . X 6 HOH B 68 268 268 HOH HOH . X 6 HOH B 69 269 269 HOH HOH . X 6 HOH B 70 270 270 HOH HOH . X 6 HOH B 71 271 271 HOH HOH . X 6 HOH B 72 272 272 HOH HOH . X 6 HOH B 73 273 273 HOH HOH . X 6 HOH B 74 274 274 HOH HOH . X 6 HOH B 75 275 275 HOH HOH . X 6 HOH B 76 276 276 HOH HOH . Y 6 HOH C 1 201 201 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 -46.845 -4.467 18.795 1 30.42 ? C1 EDO 301 A 1 HETATM 2 O O1 EDO . . . D 4 -47.763 -4.328 17.706 1 30.53 ? O1 EDO 301 A 1 HETATM 3 C C2 EDO . . . D 4 -45.431 -4.719 18.287 1 26.27 ? C2 EDO 301 A 1 HETATM 4 O O2 EDO . . . D 4 -44.975 -3.648 17.441 1 24.74 ? O2 EDO 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #