data_7WJO
#
_model_server_result.job_id            rDg-coEYrm-apShFcVi7uw 
_model_server_result.datetime_utc      '2024-11-21 14:34:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7wjo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1001}' 
#
_entry.id    7WJO 
#
_exptl.entry_id    7WJO 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              495.44 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-{[(2S,3S,4S)-2-amino-4-hydroxy-4-(5-hydroxypyridin-2-yl)-3-methylbutanoyl]amino}[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxyoxolan-2-yl]acetic acid (non-preferred name)' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7WJO 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7WJO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C20 H25 N5 O10' 
_chem_comp.formula_weight    495.44 
_chem_comp.id                BGI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-{[(2S,3S,4S)-2-amino-4-hydroxy-4-(5-hydroxypyridin-2-yl)-3-methylbutanoyl]amino}[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxyoxolan-2-yl]acetic acid (non-preferred name)' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Nikkomycin Z' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O29 C28 BGI doub 70 n n 
N27 C28 BGI sing 71 n n 
N27 C25 BGI sing 72 n n 
C28 N22 BGI sing 73 n n 
O26 C25 BGI doub 74 n n 
C25 C24 BGI sing 75 n n 
O30 C19 BGI sing 76 n n 
N22 C20 BGI sing 77 n n 
N22 C23 BGI sing 78 n n 
C20 C19 BGI sing 79 n n 
C20 O21 BGI sing 80 n n 
O31 C18 BGI sing 81 n n 
C24 C23 BGI doub 82 n n 
C19 C18 BGI sing 83 n n 
C18 C17 BGI sing 84 n n 
O21 C17 BGI sing 85 n n 
C17 C16 BGI sing 86 n n 
C16 C32 BGI sing 87 n n 
C16 N15 BGI sing 88 n n 
O34 C32 BGI doub 89 n n 
C32 O33 BGI sing 90 n n 
N15 C13 BGI sing 91 n n 
O14 C13 BGI doub 92 n n 
C13 C12 BGI sing 93 n n 
C12 N35 BGI sing 94 n n 
C12 C02 BGI sing 95 n n 
C02 C01 BGI sing 96 n n 
C02 C03 BGI sing 97 n n 
O11 C03 BGI sing 98 n n 
C03 C04 BGI sing 99 n n 
C09 C04 BGI doub 100 n y 
C09 C08 BGI sing 101 n y 
C04 N05 BGI sing 102 n y 
C08 C07 BGI doub 103 n y 
N05 C06 BGI doub 104 n y 
C07 C06 BGI sing 105 n y 
C07 O10 BGI sing 106 n n 
C17 H171 BGI sing 107 n n 
C20 H201 BGI sing 108 n n 
C24 H241 BGI sing 109 n n 
C01 H011 BGI sing 110 n n 
C01 H013 BGI sing 111 n n 
C01 H012 BGI sing 112 n n 
C02 H021 BGI sing 113 n n 
C03 H031 BGI sing 114 n n 
C06 H061 BGI sing 115 n n 
C08 H081 BGI sing 116 n n 
C09 H091 BGI sing 117 n n 
C12 H121 BGI sing 118 n n 
C16 H161 BGI sing 119 n n 
C18 H181 BGI sing 120 n n 
C19 H191 BGI sing 121 n n 
C23 H231 BGI sing 122 n n 
N15 H151 BGI sing 123 n n 
N27 H271 BGI sing 124 n n 
N35 H351 BGI sing 125 n n 
N35 H352 BGI sing 126 n n 
O10 H101 BGI sing 127 n n 
O11 H111 BGI sing 128 n n 
O30 H301 BGI sing 129 n n 
O31 H311 BGI sing 130 n n 
O33 H2 BGI sing 131 n n 
#
_atom_sites.entry_id                     7WJO 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 BGI A 1 1001 999 BGI NIK . 
D 2 BGI B 1 1001 999 BGI NIK . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C13 BGI . . . D 2 -22.249 -10.519 16.124 1 42.56 ? C13 BGI 1001 B 1 
HETATM 2 C C17 BGI . . . D 2 -20.678 -11.418 19.269 1 42.56 ? C17 BGI 1001 B 1 
HETATM 3 C C20 BGI . . . D 2 -19.241 -11.539 21.129 1 42.56 ? C20 BGI 1001 B 1 
HETATM 4 C C24 BGI . . . D 2 -16.558 -9.08 20.466 1 42.56 ? C24 BGI 1001 B 1 
HETATM 5 C C28 BGI . . . D 2 -17.194 -10.964 22.275 1 42.56 ? C28 BGI 1001 B 1 
HETATM 6 C C01 BGI . . . D 2 -22.015 -10.86 13.192 1 42.56 ? C01 BGI 1001 B 1 
HETATM 7 C C02 BGI . . . D 2 -22.937 -11.752 14.037 1 42.56 ? C02 BGI 1001 B 1 
HETATM 8 C C03 BGI . . . D 2 -24.098 -12.233 13.171 1 42.56 ? C03 BGI 1001 B 1 
HETATM 9 C C04 BGI . . . D 2 -23.582 -13.36 12.297 1 42.56 ? C04 BGI 1001 B 1 
HETATM 10 C C06 BGI . . . D 2 -22.193 -15.171 12.049 1 42.56 ? C06 BGI 1001 B 1 
HETATM 11 C C07 BGI . . . D 2 -22.636 -15.38 10.75 1 42.56 ? C07 BGI 1001 B 1 
HETATM 12 C C08 BGI . . . D 2 -23.59 -14.547 10.201 1 42.56 ? C08 BGI 1001 B 1 
HETATM 13 C C09 BGI . . . D 2 -24.066 -13.513 11.009 1 42.56 ? C09 BGI 1001 B 1 
HETATM 14 C C12 BGI . . . D 2 -23.451 -10.959 15.245 1 42.56 ? C12 BGI 1001 B 1 
HETATM 15 C C16 BGI . . . D 2 -20.408 -11.113 17.807 1 42.56 ? C16 BGI 1001 B 1 
HETATM 16 C C18 BGI . . . D 2 -20.943 -10.296 19.937 1 42.56 ? C18 BGI 1001 B 1 
HETATM 17 C C19 BGI . . . D 2 -20.485 -10.616 21.333 1 42.56 ? C19 BGI 1001 B 1 
HETATM 18 C C23 BGI . . . D 2 -17.728 -9.833 20.352 1 42.56 ? C23 BGI 1001 B 1 
HETATM 19 C C25 BGI . . . D 2 -15.727 -9.336 21.549 1 42.56 ? C25 BGI 1001 B 1 
HETATM 20 C C32 BGI . . . D 2 -19.196 -11.892 17.362 1 42.56 ? C32 BGI 1001 B 1 
HETATM 21 N N05 BGI . . . D 2 -22.673 -14.177 12.778 1 42.56 ? N05 BGI 1001 B 1 
HETATM 22 N N15 BGI . . . D 2 -21.556 -11.52 16.97 1 42.56 ? N15 BGI 1001 B 1 
HETATM 23 N N22 BGI . . . D 2 -18.013 -10.752 21.257 1 42.56 ? N22 BGI 1001 B 1 
HETATM 24 N N27 BGI . . . D 2 -16.069 -10.268 22.421 1 42.56 ? N27 BGI 1001 B 1 
HETATM 25 N N35 BGI . . . D 2 -24.204 -9.825 14.827 1 42.56 ? N35 BGI 1001 B 1 
HETATM 26 O O10 BGI . . . D 2 -22.107 -16.452 9.986 1 42.56 ? O10 BGI 1001 B 1 
HETATM 27 O O11 BGI . . . D 2 -25.135 -12.714 13.99 1 42.56 ? O11 BGI 1001 B 1 
HETATM 28 O O14 BGI . . . D 2 -21.895 -9.413 16.116 1 42.56 ? O14 BGI 1001 B 1 
HETATM 29 O O21 BGI . . . D 2 -19.352 -12.035 19.932 1 42.56 ? O21 BGI 1001 B 1 
HETATM 30 O O26 BGI . . . D 2 -14.512 -8.596 21.721 1 42.56 ? O26 BGI 1001 B 1 
HETATM 31 O O29 BGI . . . D 2 -17.468 -11.799 23.085 1 42.56 ? O29 BGI 1001 B 1 
HETATM 32 O O30 BGI . . . D 2 -21.458 -11.323 21.954 1 42.56 ? O30 BGI 1001 B 1 
HETATM 33 O O31 BGI . . . D 2 -22.413 -10.02 19.954 1 42.56 ? O31 BGI 1001 B 1 
HETATM 34 O O33 BGI . . . D 2 -18.052 -11.401 17.484 1 42.56 ? O33 BGI 1001 B 1 
HETATM 35 O O34 BGI . . . D 2 -19.339 -13.025 16.87 1 42.56 ? O34 BGI 1001 B 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           35 
#