data_7WKB # _model_server_result.job_id qS93vA4sHtQ7NJQm3yBSdA _model_server_result.datetime_utc '2024-11-12 21:27:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wkb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7WKB # _exptl.entry_id 7WKB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 328.488 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DOCOSA-4,7,10,13,16,19-HEXAENOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WKB _cell.length_a 54.551 _cell.length_b 69.427 _cell.length_c 33.926 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WKB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H32 O2' _chem_comp.formula_weight 328.488 _chem_comp.id HXA _chem_comp.mon_nstd_flag . _chem_comp.name 'DOCOSA-4,7,10,13,16,19-HEXAENOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 HXA doub 189 n n C1 O2 HXA sing 190 n n C1 C2 HXA sing 191 n n O2 HO2 HXA sing 192 n n C2 C3 HXA sing 193 n n C2 H21 HXA sing 194 n n C2 H22 HXA sing 195 n n C3 C4 HXA sing 196 n n C3 H31 HXA sing 197 n n C3 H32 HXA sing 198 n n C4 C5 HXA doub 199 z n C4 H4 HXA sing 200 n n C5 C6 HXA sing 201 n n C5 H5 HXA sing 202 n n C6 C7 HXA sing 203 n n C6 H61 HXA sing 204 n n C6 H62 HXA sing 205 n n C7 C8 HXA doub 206 z n C7 H7 HXA sing 207 n n C8 C9 HXA sing 208 n n C8 H8 HXA sing 209 n n C9 C10 HXA sing 210 n n C9 H91 HXA sing 211 n n C9 H92 HXA sing 212 n n C10 C11 HXA doub 213 z n C10 H10 HXA sing 214 n n C11 C12 HXA sing 215 n n C11 H11 HXA sing 216 n n C12 C13 HXA sing 217 n n C12 H121 HXA sing 218 n n C12 H122 HXA sing 219 n n C13 C14 HXA doub 220 z n C13 H13 HXA sing 221 n n C14 C15 HXA sing 222 n n C14 H14 HXA sing 223 n n C15 C16 HXA sing 224 n n C15 H151 HXA sing 225 n n C15 H152 HXA sing 226 n n C16 C17 HXA doub 227 z n C16 H16 HXA sing 228 n n C17 C18 HXA sing 229 n n C17 H17 HXA sing 230 n n C18 C19 HXA sing 231 n n C18 H181 HXA sing 232 n n C18 H182 HXA sing 233 n n C19 C20 HXA doub 234 z n C19 H19 HXA sing 235 n n C20 C21 HXA sing 236 n n C20 H20 HXA sing 237 n n C21 C22 HXA sing 238 n n C21 H211 HXA sing 239 n n C21 H212 HXA sing 240 n n C22 H221 HXA sing 241 n n C22 H222 HXA sing 242 n n C22 H223 HXA sing 243 n n # _atom_sites.entry_id 7WKB _atom_sites.fract_transf_matrix[1][1] 0.018331 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014404 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029476 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HXA A 1 201 200 HXA DHA . C 3 1PE A 1 202 210 1PE 1PE . D 4 HOH A 1 301 1126 HOH HOH . D 4 HOH A 2 302 1037 HOH HOH . D 4 HOH A 3 303 1121 HOH HOH . D 4 HOH A 4 304 14 HOH HOH . D 4 HOH A 5 305 1142 HOH HOH . D 4 HOH A 6 306 1044 HOH HOH . D 4 HOH A 7 307 1091 HOH HOH . D 4 HOH A 8 308 34 HOH HOH . D 4 HOH A 9 309 1096 HOH HOH . D 4 HOH A 10 310 16 HOH HOH . D 4 HOH A 11 311 1094 HOH HOH . D 4 HOH A 12 312 10 HOH HOH . D 4 HOH A 13 313 1006 HOH HOH . D 4 HOH A 14 314 1032 HOH HOH . D 4 HOH A 15 315 1059 HOH HOH . D 4 HOH A 16 316 1011 HOH HOH . D 4 HOH A 17 317 1125 HOH HOH . D 4 HOH A 18 318 1029 HOH HOH . D 4 HOH A 19 319 1035 HOH HOH . D 4 HOH A 20 320 1138 HOH HOH . D 4 HOH A 21 321 1001 HOH HOH . D 4 HOH A 22 322 1066 HOH HOH . D 4 HOH A 23 323 1083 HOH HOH . D 4 HOH A 24 324 1008 HOH HOH . D 4 HOH A 25 325 1165 HOH HOH . D 4 HOH A 26 326 1085 HOH HOH . D 4 HOH A 27 327 1122 HOH HOH . D 4 HOH A 28 328 1102 HOH HOH . D 4 HOH A 29 329 1031 HOH HOH . D 4 HOH A 30 330 1101 HOH HOH . D 4 HOH A 31 331 1128 HOH HOH . D 4 HOH A 32 332 1050 HOH HOH . D 4 HOH A 33 333 1172 HOH HOH . D 4 HOH A 34 334 1052 HOH HOH . D 4 HOH A 35 335 1020 HOH HOH . D 4 HOH A 36 336 1061 HOH HOH . D 4 HOH A 37 337 1057 HOH HOH . D 4 HOH A 38 338 1124 HOH HOH . D 4 HOH A 39 339 1073 HOH HOH . D 4 HOH A 40 340 1117 HOH HOH . D 4 HOH A 41 341 1014 HOH HOH . D 4 HOH A 42 342 1080 HOH HOH . D 4 HOH A 43 343 1012 HOH HOH . D 4 HOH A 44 344 1087 HOH HOH . D 4 HOH A 45 345 1026 HOH HOH . D 4 HOH A 46 346 1069 HOH HOH . D 4 HOH A 47 347 1065 HOH HOH . D 4 HOH A 48 348 1064 HOH HOH . D 4 HOH A 49 349 39 HOH HOH . D 4 HOH A 50 350 1164 HOH HOH . D 4 HOH A 51 351 1115 HOH HOH . D 4 HOH A 52 352 1043 HOH HOH . D 4 HOH A 53 353 1074 HOH HOH . D 4 HOH A 54 354 1048 HOH HOH . D 4 HOH A 55 355 1107 HOH HOH . D 4 HOH A 56 356 1015 HOH HOH . D 4 HOH A 57 357 1157 HOH HOH . D 4 HOH A 58 358 1099 HOH HOH . D 4 HOH A 59 359 1114 HOH HOH . D 4 HOH A 60 360 1019 HOH HOH . D 4 HOH A 61 361 1018 HOH HOH . D 4 HOH A 62 362 1055 HOH HOH . D 4 HOH A 63 363 1040 HOH HOH . D 4 HOH A 64 364 1075 HOH HOH . D 4 HOH A 65 365 1077 HOH HOH . D 4 HOH A 66 366 1003 HOH HOH . D 4 HOH A 67 367 1016 HOH HOH . D 4 HOH A 68 368 1081 HOH HOH . D 4 HOH A 69 369 1112 HOH HOH . D 4 HOH A 70 370 1034 HOH HOH . D 4 HOH A 71 371 1053 HOH HOH . D 4 HOH A 72 372 2 HOH HOH . D 4 HOH A 73 373 1118 HOH HOH . D 4 HOH A 74 374 1116 HOH HOH . D 4 HOH A 75 375 40 HOH HOH . D 4 HOH A 76 376 1090 HOH HOH . D 4 HOH A 77 377 1007 HOH HOH . D 4 HOH A 78 378 1021 HOH HOH . D 4 HOH A 79 379 1022 HOH HOH . D 4 HOH A 80 380 1079 HOH HOH . D 4 HOH A 81 381 1170 HOH HOH . D 4 HOH A 82 382 1002 HOH HOH . D 4 HOH A 83 383 1082 HOH HOH . D 4 HOH A 84 384 1143 HOH HOH . D 4 HOH A 85 385 1104 HOH HOH . D 4 HOH A 86 386 1113 HOH HOH . D 4 HOH A 87 387 1093 HOH HOH . D 4 HOH A 88 388 1042 HOH HOH . D 4 HOH A 89 389 1039 HOH HOH . D 4 HOH A 90 390 1110 HOH HOH . D 4 HOH A 91 391 1095 HOH HOH . D 4 HOH A 92 392 1060 HOH HOH . D 4 HOH A 93 393 1068 HOH HOH . D 4 HOH A 94 394 1141 HOH HOH . D 4 HOH A 95 395 1070 HOH HOH . D 4 HOH A 96 396 1086 HOH HOH . D 4 HOH A 97 397 1103 HOH HOH . D 4 HOH A 98 398 1168 HOH HOH . D 4 HOH A 99 399 1028 HOH HOH . D 4 HOH A 100 400 1105 HOH HOH . D 4 HOH A 101 401 1071 HOH HOH . D 4 HOH A 102 402 32 HOH HOH . D 4 HOH A 103 403 1111 HOH HOH . D 4 HOH A 104 404 1120 HOH HOH . D 4 HOH A 105 405 25 HOH HOH . D 4 HOH A 106 406 1076 HOH HOH . D 4 HOH A 107 407 1 HOH HOH . D 4 HOH A 108 408 1045 HOH HOH . D 4 HOH A 109 409 1092 HOH HOH . D 4 HOH A 110 410 19 HOH HOH . D 4 HOH A 111 411 1056 HOH HOH . D 4 HOH A 112 412 1098 HOH HOH . D 4 HOH A 113 413 1054 HOH HOH . D 4 HOH A 114 414 1062 HOH HOH . D 4 HOH A 115 415 1051 HOH HOH . D 4 HOH A 116 416 1072 HOH HOH . D 4 HOH A 117 417 1024 HOH HOH . D 4 HOH A 118 418 1100 HOH HOH . D 4 HOH A 119 419 1038 HOH HOH . D 4 HOH A 120 420 13 HOH HOH . D 4 HOH A 121 421 1027 HOH HOH . D 4 HOH A 122 422 1084 HOH HOH . D 4 HOH A 123 423 1139 HOH HOH . D 4 HOH A 124 424 1063 HOH HOH . D 4 HOH A 125 425 1017 HOH HOH . D 4 HOH A 126 426 1140 HOH HOH . D 4 HOH A 127 427 1159 HOH HOH . D 4 HOH A 128 428 6 HOH HOH . D 4 HOH A 129 429 1046 HOH HOH . D 4 HOH A 130 430 24 HOH HOH . D 4 HOH A 131 431 1049 HOH HOH . D 4 HOH A 132 432 41 HOH HOH . D 4 HOH A 133 433 1030 HOH HOH . D 4 HOH A 134 434 1067 HOH HOH . D 4 HOH A 135 435 1152 HOH HOH . D 4 HOH A 136 436 8 HOH HOH . D 4 HOH A 137 437 1047 HOH HOH . D 4 HOH A 138 438 1163 HOH HOH . D 4 HOH A 139 439 1145 HOH HOH . D 4 HOH A 140 440 4 HOH HOH . D 4 HOH A 141 441 12 HOH HOH . D 4 HOH A 142 442 5 HOH HOH . D 4 HOH A 143 443 11 HOH HOH . D 4 HOH A 144 444 1041 HOH HOH . D 4 HOH A 145 445 1146 HOH HOH . D 4 HOH A 146 446 1123 HOH HOH . D 4 HOH A 147 447 1009 HOH HOH . D 4 HOH A 148 448 1097 HOH HOH . D 4 HOH A 149 449 1058 HOH HOH . D 4 HOH A 150 450 1036 HOH HOH . D 4 HOH A 151 451 1106 HOH HOH . D 4 HOH A 152 452 1005 HOH HOH . D 4 HOH A 153 453 1177 HOH HOH . D 4 HOH A 154 454 3 HOH HOH . D 4 HOH A 155 455 18 HOH HOH . D 4 HOH A 156 456 1169 HOH HOH . D 4 HOH A 157 457 1078 HOH HOH . D 4 HOH A 158 458 1088 HOH HOH . D 4 HOH A 159 459 1136 HOH HOH . D 4 HOH A 160 460 1151 HOH HOH . D 4 HOH A 161 461 1108 HOH HOH . D 4 HOH A 162 462 1023 HOH HOH . D 4 HOH A 163 463 1010 HOH HOH . D 4 HOH A 164 464 27 HOH HOH . D 4 HOH A 165 465 1158 HOH HOH . D 4 HOH A 166 466 1147 HOH HOH . D 4 HOH A 167 467 1109 HOH HOH . D 4 HOH A 168 468 9 HOH HOH . D 4 HOH A 169 469 30 HOH HOH . D 4 HOH A 170 470 1149 HOH HOH . D 4 HOH A 171 471 1013 HOH HOH . D 4 HOH A 172 472 1144 HOH HOH . D 4 HOH A 173 473 1025 HOH HOH . D 4 HOH A 174 474 1153 HOH HOH . D 4 HOH A 175 475 1130 HOH HOH . D 4 HOH A 176 476 33 HOH HOH . D 4 HOH A 177 477 1175 HOH HOH . D 4 HOH A 178 478 1173 HOH HOH . D 4 HOH A 179 479 1129 HOH HOH . D 4 HOH A 180 480 1131 HOH HOH . D 4 HOH A 181 481 1154 HOH HOH . D 4 HOH A 182 482 15 HOH HOH . D 4 HOH A 183 483 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HXA . A . B 2 5.752 -16.661 -1.441 0.7 7.59 ? C1 HXA 201 A 1 HETATM 2 C C1 HXA . B . B 2 6.043 -16.993 -0.433 0.3 8.22 ? C1 HXA 201 A 1 HETATM 3 O O1 HXA . A . B 2 6.823 -16.01 -1.511 0.7 7.6 ? O1 HXA 201 A 1 HETATM 4 O O1 HXA . B . B 2 5.171 -16.745 0.462 0.3 8.78 ? O1 HXA 201 A 1 HETATM 5 O O2 HXA . A . B 2 4.746 -16.283 -0.767 0.7 8.04 ? O2 HXA 201 A 1 HETATM 6 O O2 HXA . B . B 2 6.92 -16.214 -0.658 0.3 8.29 ? O2 HXA 201 A 1 HETATM 7 C C2 HXA . A . B 2 5.578 -18.061 -2.04 0.9 14.03 ? C2 HXA 201 A 1 HETATM 8 C C2 HXA . B . B 2 5.798 -18.145 -1.49 0.1 11.41 ? C2 HXA 201 A 1 HETATM 9 C C3 HXA . . . B 2 6.819 -18.646 -2.61 1 13.66 ? C3 HXA 201 A 1 HETATM 10 C C4 HXA . . . B 2 6.874 -18.015 -4.041 1 14.45 ? C4 HXA 201 A 1 HETATM 11 C C5 HXA . . . B 2 7.563 -18.646 -5.008 1 15.65 ? C5 HXA 201 A 1 HETATM 12 C C6 HXA . . . B 2 8.165 -19.962 -4.943 1 13.65 ? C6 HXA 201 A 1 HETATM 13 C C7 HXA . . . B 2 7.934 -20.59 -6.207 1 16.78 ? C7 HXA 201 A 1 HETATM 14 C C8 HXA . . . B 2 7.26 -21.629 -6.285 1 17.93 ? C8 HXA 201 A 1 HETATM 15 C C9 HXA . . . B 2 6.492 -22.353 -5.27 1 20.21 ? C9 HXA 201 A 1 HETATM 16 C C10 HXA . . . B 2 6.652 -23.799 -5.484 1 19.38 ? C10 HXA 201 A 1 HETATM 17 C C11 HXA . . . B 2 6.725 -24.691 -4.546 1 21.36 ? C11 HXA 201 A 1 HETATM 18 C C12 HXA . . . B 2 6.728 -24.292 -3.143 1 24.28 ? C12 HXA 201 A 1 HETATM 19 C C13 HXA . . . B 2 7.722 -25.244 -2.533 1 28.88 ? C13 HXA 201 A 1 HETATM 20 C C14 HXA . . . B 2 8.44 -24.988 -1.435 1 27.81 ? C14 HXA 201 A 1 HETATM 21 C C15 HXA . A . B 2 8.271 -23.67 -0.699 0.5 21.05 ? C15 HXA 201 A 1 HETATM 22 C C15 HXA . B . B 2 8.325 -23.726 -0.623 0.5 27.22 ? C15 HXA 201 A 1 HETATM 23 C C16 HXA . A . B 2 8.093 -23.822 0.787 0.5 21.4 ? C16 HXA 201 A 1 HETATM 24 C C16 HXA . B . B 2 7.458 -24.112 0.543 0.5 27.34 ? C16 HXA 201 A 1 HETATM 25 C C17 HXA . A . B 2 7.161 -23.109 1.425 0.5 18.4 ? C17 HXA 201 A 1 HETATM 26 C C17 HXA . B . B 2 6.553 -23.258 0.99 0.5 23.42 ? C17 HXA 201 A 1 HETATM 27 C C18 HXA . A . B 2 6.253 -22.164 0.696 0.5 19.86 ? C18 HXA 201 A 1 HETATM 28 C C18 HXA . B . B 2 6.499 -21.923 0.3 0.5 24.2 ? C18 HXA 201 A 1 HETATM 29 C C19 HXA . A . B 2 6.708 -20.714 0.477 0.5 21.96 ? C19 HXA 201 A 1 HETATM 30 C C19 HXA . B . B 2 6.959 -20.894 1.301 0.5 25.62 ? C19 HXA 201 A 1 HETATM 31 C C20 HXA . A . B 2 7.828 -20.037 0.841 0.5 20.83 ? C20 HXA 201 A 1 HETATM 32 C C20 HXA . B . B 2 8.145 -20.24 1.209 0.5 24.17 ? C20 HXA 201 A 1 HETATM 33 C C21 HXA . A . B 2 9.007 -20.61 1.623 0.5 17.6 ? C21 HXA 201 A 1 HETATM 34 C C21 HXA . B . B 2 9.134 -20.47 0.075 0.5 20.93 ? C21 HXA 201 A 1 HETATM 35 C C22 HXA . A . B 2 10.184 -20.604 0.664 0.5 20.82 ? C22 HXA 201 A 1 HETATM 36 C C22 HXA . B . B 2 10.605 -20.53 0.495 0.5 15.2 ? C22 HXA 201 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 36 #