data_7WKV
#
_model_server_result.job_id            zo264q9xBMnS88i8pcirkA 
_model_server_result.datetime_utc      '2025-02-26 21:43:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7wkv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":301}' 
#
_entry.id    7WKV 
#
_exptl.entry_id    7WKV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7WKV 
_cell.length_a            78.364 
_cell.length_b            78.364 
_cell.length_c            106.688 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7WKV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        145 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H,M,N 1 1 
C,D,I,J,O,P 2 1 
E,F,K,L,Q,R 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 I N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B O3' G 3 B G 3 1_555 B P 6MZ 4 B 6MZ 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 ? 
covale ? covale2 B O3' 6MZ 4 B 6MZ 4 1_555 B P C 5 B C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.601 ? 
covale ? covale3 D O3' G 3 D G 3 1_555 D P 6MZ 4 D 6MZ 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.602 ? 
covale ? covale4 D O3' 6MZ 4 D 6MZ 4 1_555 D P C 5 D C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 ? 
covale ? covale5 F O3' G 3 F G 3 1_555 F P 6MZ 4 F 6MZ 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? 
covale ? covale6 F O3' 6MZ 4 F 6MZ 4 1_555 F P C 5 F C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.607 ? 
metalc ? metalc1 A NE2 HIS 132 A HIS 204 1_555 G MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? 
metalc ? metalc2 A OD1 ASP 134 A ASP 206 1_555 G MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc3 A NE2 HIS 194 A HIS 266 1_555 G MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
metalc ? metalc4 G MN MN . A MN 301 1_555 H O2 AKG . A AKG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc5 G MN MN . A MN 301 1_555 H O5 AKG . A AKG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc6 G MN MN . A MN 301 1_555 M O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? 
metalc ? metalc7 C NE2 HIS 132 C HIS 204 1_555 I MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? 
metalc ? metalc8 C OD1 ASP 134 C ASP 206 1_555 I MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 ? 
metalc ? metalc9 C NE2 HIS 194 C HIS 266 1_555 I MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? 
metalc ? metalc10 I MN MN . C MN 301 1_555 J O1 AKG . C AKG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc11 I MN MN . C MN 301 1_555 J O5 AKG . C AKG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc12 I MN MN . C MN 301 1_555 O O HOH . C HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? 
metalc ? metalc13 E NE2 HIS 132 E HIS 204 1_555 K MN MN . E MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc14 E OD1 ASP 134 E ASP 206 1_555 K MN MN . E MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc15 E NE2 HIS 194 E HIS 266 1_555 K MN MN . E MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
metalc ? metalc16 K MN MN . E MN 301 1_555 L O1 AKG . E AKG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? 
metalc ? metalc17 K MN MN . E MN 301 1_555 L O5 AKG . E AKG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
metalc ? metalc18 K MN MN . E MN 301 1_555 Q O HOH . E HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7WKV 
_atom_sites.fract_transf_matrix[1][1]    0.012761 
_atom_sites.fract_transf_matrix[1][2]    0.007368 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014735 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009373 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 MN A 1 301 301 MN MN . 
H 4 AKG A 1 302 401 AKG AKG . 
I 3 MN C 1 301 301 MN MN . 
J 4 AKG C 1 302 401 AKG AKG . 
K 3 MN E 1 301 301 MN MN . 
L 4 AKG E 1 302 401 AKG AKG . 
M 5 HOH A 1 401 58 HOH HOH . 
M 5 HOH A 2 402 1 HOH HOH . 
M 5 HOH A 3 403 88 HOH HOH . 
M 5 HOH A 4 404 5 HOH HOH . 
M 5 HOH A 5 405 74 HOH HOH . 
M 5 HOH A 6 406 25 HOH HOH . 
M 5 HOH A 7 407 48 HOH HOH . 
M 5 HOH A 8 408 7 HOH HOH . 
M 5 HOH A 9 409 33 HOH HOH . 
M 5 HOH A 10 410 11 HOH HOH . 
M 5 HOH A 11 411 23 HOH HOH . 
M 5 HOH A 12 412 75 HOH HOH . 
M 5 HOH A 13 413 56 HOH HOH . 
M 5 HOH A 14 414 17 HOH HOH . 
M 5 HOH A 15 415 112 HOH HOH . 
M 5 HOH A 16 416 55 HOH HOH . 
M 5 HOH A 17 417 69 HOH HOH . 
M 5 HOH A 18 418 97 HOH HOH . 
M 5 HOH A 19 419 102 HOH HOH . 
M 5 HOH A 20 420 63 HOH HOH . 
M 5 HOH A 21 421 12 HOH HOH . 
M 5 HOH A 22 422 10 HOH HOH . 
M 5 HOH A 23 423 21 HOH HOH . 
M 5 HOH A 24 424 9 HOH HOH . 
M 5 HOH A 25 425 35 HOH HOH . 
M 5 HOH A 26 426 94 HOH HOH . 
M 5 HOH A 27 427 79 HOH HOH . 
M 5 HOH A 28 428 72 HOH HOH . 
M 5 HOH A 29 429 37 HOH HOH . 
M 5 HOH A 30 430 91 HOH HOH . 
M 5 HOH A 31 431 109 HOH HOH . 
M 5 HOH A 32 432 38 HOH HOH . 
M 5 HOH A 33 433 87 HOH HOH . 
M 5 HOH A 34 434 36 HOH HOH . 
N 5 HOH B 1 101 61 HOH HOH . 
N 5 HOH B 2 102 92 HOH HOH . 
N 5 HOH B 3 103 83 HOH HOH . 
O 5 HOH C 1 401 29 HOH HOH . 
O 5 HOH C 2 402 110 HOH HOH . 
O 5 HOH C 3 403 64 HOH HOH . 
O 5 HOH C 4 404 3 HOH HOH . 
O 5 HOH C 5 405 39 HOH HOH . 
O 5 HOH C 6 406 51 HOH HOH . 
O 5 HOH C 7 407 100 HOH HOH . 
O 5 HOH C 8 408 32 HOH HOH . 
O 5 HOH C 9 409 4 HOH HOH . 
O 5 HOH C 10 410 59 HOH HOH . 
O 5 HOH C 11 411 60 HOH HOH . 
O 5 HOH C 12 412 111 HOH HOH . 
O 5 HOH C 13 413 54 HOH HOH . 
O 5 HOH C 14 414 68 HOH HOH . 
O 5 HOH C 15 415 81 HOH HOH . 
O 5 HOH C 16 416 82 HOH HOH . 
O 5 HOH C 17 417 101 HOH HOH . 
O 5 HOH C 18 418 45 HOH HOH . 
O 5 HOH C 19 419 84 HOH HOH . 
P 5 HOH D 1 101 73 HOH HOH . 
P 5 HOH D 2 102 80 HOH HOH . 
P 5 HOH D 3 103 16 HOH HOH . 
P 5 HOH D 4 104 27 HOH HOH . 
Q 5 HOH E 1 401 52 HOH HOH . 
Q 5 HOH E 2 402 2 HOH HOH . 
Q 5 HOH E 3 403 44 HOH HOH . 
Q 5 HOH E 4 404 24 HOH HOH . 
Q 5 HOH E 5 405 31 HOH HOH . 
Q 5 HOH E 6 406 14 HOH HOH . 
Q 5 HOH E 7 407 34 HOH HOH . 
Q 5 HOH E 8 408 105 HOH HOH . 
Q 5 HOH E 9 409 6 HOH HOH . 
Q 5 HOH E 10 410 93 HOH HOH . 
Q 5 HOH E 11 411 28 HOH HOH . 
Q 5 HOH E 12 412 30 HOH HOH . 
Q 5 HOH E 13 413 19 HOH HOH . 
Q 5 HOH E 14 414 43 HOH HOH . 
Q 5 HOH E 15 415 99 HOH HOH . 
Q 5 HOH E 16 416 106 HOH HOH . 
Q 5 HOH E 17 417 8 HOH HOH . 
Q 5 HOH E 18 418 85 HOH HOH . 
Q 5 HOH E 19 419 42 HOH HOH . 
Q 5 HOH E 20 420 98 HOH HOH . 
Q 5 HOH E 21 421 22 HOH HOH . 
Q 5 HOH E 22 422 66 HOH HOH . 
Q 5 HOH E 23 423 70 HOH HOH . 
Q 5 HOH E 24 424 108 HOH HOH . 
Q 5 HOH E 25 425 26 HOH HOH . 
Q 5 HOH E 26 426 20 HOH HOH . 
Q 5 HOH E 27 427 107 HOH HOH . 
R 5 HOH F 1 101 18 HOH HOH . 
R 5 HOH F 2 102 62 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         K 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               37.099 
_atom_site.Cartn_y               -18 
_atom_site.Cartn_z               19.448 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        45.96 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           301 
_atom_site.auth_asym_id          E 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#