data_7WKX
#
_model_server_result.job_id            7xy9s-dZiUrdTZNyyDE_aA 
_model_server_result.datetime_utc      '2024-10-20 20:41:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7wkx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":301}' 
#
_entry.id    7WKX 
#
_exptl.entry_id    7WKX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              104.061 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALONIC ACID' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.27 
_cell.angle_gamma         90 
_cell.entry_id            7WKX 
_cell.length_a            301.142 
_cell.length_b            50.829 
_cell.length_c            117.216 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7WKX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 I N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
? 4 P N N 
? 4 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 A SG CYS 144 A CYS 144 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf4 B SG CYS 144 B CYS 144 1_555 B SG CYS 200 B CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
disulf ? disulf5 C SG CYS 23 C CYS 23 1_555 C SG CYS 93 C CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf6 C SG CYS 139 C CYS 139 1_555 C SG CYS 199 C CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf7 D SG CYS 23 D CYS 23 1_555 D SG CYS 93 D CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf8 D SG CYS 139 D CYS 139 1_555 D SG CYS 199 D CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
disulf ? disulf9 E SG CYS 90 E CYS 94 1_555 E SG CYS 140 E CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf10 E SG CYS 95 E CYS 99 1_555 E SG CYS 142 E CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf11 F SG CYS 90 F CYS 94 1_555 F SG CYS 140 F CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf12 F SG CYS 95 F CYS 99 1_555 F SG CYS 142 F CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
#
_chem_comp.formula           'C3 H4 O4' 
_chem_comp.formula_weight    104.061 
_chem_comp.id                MLA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'DICARBOXYLIC ACID C3;PROPANEDIOLIC ACID;METHANEDICARBOXYLIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1A MLA sing 244 n n 
C1 O1B MLA doub 245 n n 
C1 C2 MLA sing 246 n n 
O1A H1A MLA sing 247 n n 
C2 C3 MLA sing 248 n n 
C2 HC21 MLA sing 249 n n 
C2 HC22 MLA sing 250 n n 
C3 O3A MLA doub 251 n n 
C3 O3B MLA sing 252 n n 
O3B H3B MLA sing 253 n n 
#
_atom_sites.entry_id                     7WKX 
_atom_sites.fract_transf_matrix[1][1]    0.003321 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000662 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019674 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008699 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 MLA A 1 301 4 MLA DR2 . 
H 5 ACY A 1 302 9 ACY DR1 . 
I 4 MLA B 1 301 5 MLA DR2 . 
J 5 ACY B 1 302 11 ACY DR1 . 
K 5 ACY C 1 301 1 ACY DR1 . 
L 4 MLA C 1 302 2 MLA DR2 . 
M 4 MLA C 1 303 6 MLA DR2 . 
N 4 MLA C 1 304 8 MLA DR2 . 
O 5 ACY D 1 301 10 ACY DR1 . 
P 4 MLA E 1 201 7 MLA DR2 . 
Q 4 MLA F 1 201 3 MLA DR2 . 
R 6 HOH A 1 401 19 HOH HOH . 
R 6 HOH A 2 402 33 HOH HOH . 
R 6 HOH A 3 403 7 HOH HOH . 
R 6 HOH A 4 404 4 HOH HOH . 
R 6 HOH A 5 405 8 HOH HOH . 
R 6 HOH A 6 406 21 HOH HOH . 
R 6 HOH A 7 407 30 HOH HOH . 
S 6 HOH B 1 401 34 HOH HOH . 
S 6 HOH B 2 402 16 HOH HOH . 
S 6 HOH B 3 403 1 HOH HOH . 
T 6 HOH C 1 401 35 HOH HOH . 
T 6 HOH C 2 402 22 HOH HOH . 
T 6 HOH C 3 403 18 HOH HOH . 
T 6 HOH C 4 404 17 HOH HOH . 
T 6 HOH C 5 405 25 HOH HOH . 
T 6 HOH C 6 406 26 HOH HOH . 
T 6 HOH C 7 407 13 HOH HOH . 
T 6 HOH C 8 408 12 HOH HOH . 
T 6 HOH C 9 409 28 HOH HOH . 
T 6 HOH C 10 410 32 HOH HOH . 
T 6 HOH C 11 411 23 HOH HOH . 
T 6 HOH C 12 412 9 HOH HOH . 
T 6 HOH C 13 413 6 HOH HOH . 
T 6 HOH C 14 414 5 HOH HOH . 
T 6 HOH C 15 415 29 HOH HOH . 
T 6 HOH C 16 416 14 HOH HOH . 
T 6 HOH C 17 417 15 HOH HOH . 
T 6 HOH C 18 418 24 HOH HOH . 
T 6 HOH C 19 419 11 HOH HOH . 
T 6 HOH C 20 420 20 HOH HOH . 
T 6 HOH C 21 421 3 HOH HOH . 
U 6 HOH D 1 401 27 HOH HOH . 
U 6 HOH D 2 402 36 HOH HOH . 
U 6 HOH D 3 403 37 HOH HOH . 
U 6 HOH D 4 404 31 HOH HOH . 
U 6 HOH D 5 405 2 HOH HOH . 
V 6 HOH E 1 301 10 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLA . . . I 4 62.473 28.816 37.653 1 68.07 ? C1 MLA 301 B 1 
HETATM 2 O O1A MLA . . . I 4 61.996 27.681 37.426 1 63.84 ? O1A MLA 301 B 1 
HETATM 3 O O1B MLA . . . I 4 63.636 29.117 37.35 1 83.06 ? O1B MLA 301 B 1 
HETATM 4 C C2 MLA . . . I 4 61.603 29.86 38.41 1 66.71 ? C2 MLA 301 B 1 
HETATM 5 C C3 MLA . . . I 4 61.864 31.4 38.177 1 74.83 ? C3 MLA 301 B 1 
HETATM 6 O O3A MLA . . . I 4 62.886 31.839 37.591 1 73.44 ? O3A MLA 301 B 1 
HETATM 7 O O3B MLA . . . I 4 61.01 32.168 38.674 1 80.34 ? O3B MLA 301 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           7 
#