data_7WKY # _model_server_result.job_id xdITpzYH4BuzEi1B6KdgWg _model_server_result.datetime_utc '2024-11-13 10:12:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wky # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":202}' # _entry.id 7WKY # _exptl.entry_id 7WKY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7WKY _cell.length_a 140.846 _cell.length_b 140.846 _cell.length_c 131.832 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WKY _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,M 1 1 B,H,I,J,N 2 1 C,K,L,O 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 I N N ? 3 J N N ? 3 L N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7WKY _atom_sites.fract_transf_matrix[1][1] 0.0071 _atom_sites.fract_transf_matrix[1][2] 0.004099 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008198 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007585 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 JFR A 1 201 1 JFR JFR . E 3 GOL A 1 202 1 GOL GOL . F 3 GOL A 1 203 2 GOL GOL . G 3 GOL A 1 204 5 GOL GOL . H 2 JFR B 1 201 2 JFR JFR . I 3 GOL B 1 202 3 GOL GOL . J 3 GOL B 1 203 6 GOL GOL . K 2 JFR C 1 201 3 JFR JFR . L 3 GOL C 1 202 4 GOL GOL . M 4 HOH A 1 301 5 HOH HOH . M 4 HOH A 2 302 14 HOH HOH . M 4 HOH A 3 303 10 HOH HOH . M 4 HOH A 4 304 9 HOH HOH . M 4 HOH A 5 305 13 HOH HOH . M 4 HOH A 6 306 6 HOH HOH . M 4 HOH A 7 307 11 HOH HOH . M 4 HOH A 8 308 4 HOH HOH . M 4 HOH A 9 309 12 HOH HOH . N 4 HOH B 1 301 3 HOH HOH . N 4 HOH B 2 302 2 HOH HOH . N 4 HOH B 3 303 7 HOH HOH . N 4 HOH B 4 304 8 HOH HOH . O 4 HOH C 1 301 15 HOH HOH . O 4 HOH C 2 302 1 HOH HOH . O 4 HOH C 3 303 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 3 -60.636 17.376 14.318 1 96.05 ? C1 GOL 202 B 1 HETATM 2 O O1 GOL . . . I 3 -59.817 18.451 14.785 1 102.15 ? O1 GOL 202 B 1 HETATM 3 C C2 GOL . . . I 3 -61.712 17.95 13.408 1 96.46 ? C2 GOL 202 B 1 HETATM 4 O O2 GOL . . . I 3 -62.322 16.836 12.756 1 85.56 ? O2 GOL 202 B 1 HETATM 5 C C3 GOL . . . I 3 -62.731 18.801 14.193 1 100.15 ? C3 GOL 202 B 1 HETATM 6 O O3 GOL . . . I 3 -63.786 17.986 14.744 1 100.39 ? O3 GOL 202 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #