data_7WKY
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_model_server_result.job_id            dW20ypHi6pIv4Q2YOexxAQ 
_model_server_result.datetime_utc      '2024-11-13 09:55:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7wky 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":202}' 
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_entry.id    7WKY 
#
_exptl.entry_id    7WKY 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7WKY 
_cell.length_a            140.846 
_cell.length_b            140.846 
_cell.length_c            131.832 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 7WKY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
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loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
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loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,M 1 1 
B,H,I,J,N 2 1 
C,K,L,O 3 1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 I N N 
? 3 J N N 
? 3 L N N 
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_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
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loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     7WKY 
_atom_sites.fract_transf_matrix[1][1]    0.0071 
_atom_sites.fract_transf_matrix[1][2]    0.004099 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008198 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007585 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 JFR A 1 201 1 JFR JFR . 
E 3 GOL A 1 202 1 GOL GOL . 
F 3 GOL A 1 203 2 GOL GOL . 
G 3 GOL A 1 204 5 GOL GOL . 
H 2 JFR B 1 201 2 JFR JFR . 
I 3 GOL B 1 202 3 GOL GOL . 
J 3 GOL B 1 203 6 GOL GOL . 
K 2 JFR C 1 201 3 JFR JFR . 
L 3 GOL C 1 202 4 GOL GOL . 
M 4 HOH A 1 301 5 HOH HOH . 
M 4 HOH A 2 302 14 HOH HOH . 
M 4 HOH A 3 303 10 HOH HOH . 
M 4 HOH A 4 304 9 HOH HOH . 
M 4 HOH A 5 305 13 HOH HOH . 
M 4 HOH A 6 306 6 HOH HOH . 
M 4 HOH A 7 307 11 HOH HOH . 
M 4 HOH A 8 308 4 HOH HOH . 
M 4 HOH A 9 309 12 HOH HOH . 
N 4 HOH B 1 301 3 HOH HOH . 
N 4 HOH B 2 302 2 HOH HOH . 
N 4 HOH B 3 303 7 HOH HOH . 
N 4 HOH B 4 304 8 HOH HOH . 
O 4 HOH C 1 301 15 HOH HOH . 
O 4 HOH C 2 302 1 HOH HOH . 
O 4 HOH C 3 303 16 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . L 3 -18.219 10.596 -6.519 1 108.08 ? C1 GOL 202 C 1 
HETATM 2 O O1 GOL . . . L 3 -18.73 9.451 -7.187 1 102.5 ? O1 GOL 202 C 1 
HETATM 3 C C2 GOL . . . L 3 -19.03 10.91 -5.265 1 111.83 ? C2 GOL 202 C 1 
HETATM 4 O O2 GOL . . . L 3 -18.434 12.043 -4.639 1 116.43 ? O2 GOL 202 C 1 
HETATM 5 C C3 GOL . . . L 3 -19.033 9.754 -4.27 1 110.88 ? C3 GOL 202 C 1 
HETATM 6 O O3 GOL . . . L 3 -20.209 8.972 -4.483 1 111.16 ? O3 GOL 202 C 1 
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_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           33 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           217 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
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