data_7WLJ # _model_server_result.job_id Ib5WcoNsLNaRvytb32Pw0w _model_server_result.datetime_utc '2024-11-21 14:22:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wlj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2301}' # _entry.id 7WLJ # _exptl.entry_id 7WLJ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 495.629 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S,2S)-2-(2-{[3-(1H-benzimidazol-2-yl)propyl](methyl)amino}ethyl)-6-fluoro-1-(propan-2-yl)-1,2,3,4-tetrahydronaphthalen-2-yl methoxyacetate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WLJ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WLJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 239 A CYS 239 1_555 A SG CYS 280 A CYS 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 269 A CYS 269 1_555 A SG CYS 326 A CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 1335 A CYS 1335 1_555 A SG CYS 1349 A CYS 1349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 1646 A CYS 1646 1_555 A SG CYS 1652 A CYS 1652 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 1691 A CYS 1691 1_555 A SG CYS 1698 A CYS 1698 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 1342 A ASN 1342 1_555 M C1 NAG . A NAG 2312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 A ND2 ASN 1345 A ASN 1345 1_555 K C1 NAG . A NAG 2310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? metalc ? metalc1 A OE2 GLU 357 A GLU 357 1_555 E CA CA . A CA 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? # _chem_comp.formula 'C29 H38 F N3 O3' _chem_comp.formula_weight 495.629 _chem_comp.id MWV _chem_comp.mon_nstd_flag . _chem_comp.name '(1S,2S)-2-(2-{[3-(1H-benzimidazol-2-yl)propyl](methyl)amino}ethyl)-6-fluoro-1-(propan-2-yl)-1,2,3,4-tetrahydronaphthalen-2-yl methoxyacetate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C20 MWV doub 367 n y C19 C18 MWV sing 368 n y C20 C21 MWV sing 369 n y C18 C17 MWV doub 370 n y C21 C22 MWV doub 371 n y O02 C03 MWV sing 372 n n O02 C01 MWV sing 373 n n C03 C04 MWV sing 374 n n C17 C22 MWV sing 375 n y C17 N16 MWV sing 376 n y C22 N23 MWV sing 377 n y C36 C34 MWV sing 378 n n C04 O06 MWV sing 379 n n C04 O05 MWV doub 380 n n N16 C15 MWV sing 381 n y N23 C15 MWV doub 382 n y O06 C07 MWV sing 383 n n C15 C14 MWV sing 384 n n C34 C35 MWV sing 385 n n C34 C33 MWV sing 386 n n C24 C07 MWV sing 387 n n C24 C25 MWV sing 388 n n C07 C33 MWV sing 389 n n C07 C08 MWV sing 390 n n C33 C27 MWV sing 391 n n C14 C13 MWV sing 392 n n C08 C09 MWV sing 393 n n C25 C26 MWV sing 394 n n C09 N10 MWV sing 395 n n C13 C12 MWV sing 396 n n C27 C26 MWV doub 397 n y C27 C28 MWV sing 398 n y C26 C32 MWV sing 399 n y C12 N10 MWV sing 400 n n N10 C11 MWV sing 401 n n C28 C29 MWV doub 402 n y C32 C30 MWV doub 403 n y C29 C30 MWV sing 404 n y C30 F31 MWV sing 405 n n C01 H1 MWV sing 406 n n C01 H2 MWV sing 407 n n C01 H3 MWV sing 408 n n C03 H4 MWV sing 409 n n C03 H5 MWV sing 410 n n C08 H6 MWV sing 411 n n C08 H7 MWV sing 412 n n C09 H8 MWV sing 413 n n C09 H9 MWV sing 414 n n C11 H10 MWV sing 415 n n C11 H11 MWV sing 416 n n C11 H12 MWV sing 417 n n C12 H13 MWV sing 418 n n C12 H14 MWV sing 419 n n C13 H15 MWV sing 420 n n C13 H16 MWV sing 421 n n C14 H17 MWV sing 422 n n C14 H18 MWV sing 423 n n C18 H19 MWV sing 424 n n C19 H20 MWV sing 425 n n C20 H21 MWV sing 426 n n C21 H22 MWV sing 427 n n C24 H23 MWV sing 428 n n C25 H24 MWV sing 429 n n C28 H25 MWV sing 430 n n C29 H26 MWV sing 431 n n C32 H27 MWV sing 432 n n C33 H28 MWV sing 433 n n C34 H29 MWV sing 434 n n C35 H30 MWV sing 435 n n C35 H31 MWV sing 436 n n C35 H32 MWV sing 437 n n C36 H33 MWV sing 438 n n C36 H34 MWV sing 439 n n C36 H35 MWV sing 440 n n N16 H37 MWV sing 441 n n C24 H39 MWV sing 442 n n C25 H40 MWV sing 443 n n # _atom_sites.entry_id 7WLJ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MWV A 1 2301 2301 MWV MWV . C 3 3PE A 1 2302 2302 3PE 3PE . D 3 3PE A 1 2303 2303 3PE 3PE . E 4 CA A 1 2304 2304 CA CA . F 3 3PE A 1 2305 2305 3PE 3PE . G 3 3PE A 1 2306 2306 3PE 3PE . H 3 3PE A 1 2307 2307 3PE 3PE . I 5 Y01 A 1 2308 2308 Y01 Y01 . J 5 Y01 A 1 2309 2309 Y01 Y01 . K 6 NAG A 1 2310 2311 NAG NAG . L 5 Y01 A 1 2311 2312 Y01 Y01 . M 6 NAG A 1 2312 2313 NAG NAG . N 5 Y01 A 1 2313 2314 Y01 Y01 . O 5 Y01 A 1 2314 2315 Y01 Y01 . P 5 Y01 A 1 2315 2316 Y01 Y01 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 MWV . . . B 2 138.257 132.49 139.769 1 69.79 ? C01 MWV 2301 A 1 HETATM 2 C C03 MWV . . . B 2 135.935 132.684 139.478 1 69.79 ? C03 MWV 2301 A 1 HETATM 3 C C04 MWV . . . B 2 135.699 132.107 138.066 1 69.79 ? C04 MWV 2301 A 1 HETATM 4 C C07 MWV . . . B 2 135.631 129.725 137.484 1 69.79 ? C07 MWV 2301 A 1 HETATM 5 C C08 MWV . . . B 2 135.23 128.555 138.431 1 69.79 ? C08 MWV 2301 A 1 HETATM 6 C C09 MWV . . . B 2 134.45 129.05 139.67 1 69.79 ? C09 MWV 2301 A 1 HETATM 7 C C11 MWV . . . B 2 133.145 127.022 139.508 1 69.79 ? C11 MWV 2301 A 1 HETATM 8 C C12 MWV . . . B 2 132.555 128.685 141.096 1 69.79 ? C12 MWV 2301 A 1 HETATM 9 C C13 MWV . . . B 2 132.617 130.203 141.44 1 69.79 ? C13 MWV 2301 A 1 HETATM 10 C C14 MWV . . . B 2 133.462 130.461 142.698 1 69.79 ? C14 MWV 2301 A 1 HETATM 11 C C15 MWV . . . B 2 133.266 131.899 143.244 1 69.79 ? C15 MWV 2301 A 1 HETATM 12 C C17 MWV . . . B 2 132.348 133.741 143.969 1 69.79 ? C17 MWV 2301 A 1 HETATM 13 C C18 MWV . . . B 2 131.496 134.789 144.394 1 69.79 ? C18 MWV 2301 A 1 HETATM 14 C C19 MWV . . . B 2 132.038 135.994 144.83 1 69.79 ? C19 MWV 2301 A 1 HETATM 15 C C20 MWV . . . B 2 133.419 136.166 144.853 1 69.79 ? C20 MWV 2301 A 1 HETATM 16 C C21 MWV . . . B 2 134.256 135.136 144.438 1 69.79 ? C21 MWV 2301 A 1 HETATM 17 C C22 MWV . . . B 2 133.702 133.913 143.992 1 69.79 ? C22 MWV 2301 A 1 HETATM 18 C C24 MWV . . . B 2 137.14 129.849 137.633 1 69.79 ? C24 MWV 2301 A 1 HETATM 19 C C25 MWV . . . B 2 137.958 128.885 136.758 1 69.79 ? C25 MWV 2301 A 1 HETATM 20 C C26 MWV . . . B 2 137.157 127.817 136.001 1 69.79 ? C26 MWV 2301 A 1 HETATM 21 C C27 MWV . . . B 2 135.889 128.068 135.63 1 69.79 ? C27 MWV 2301 A 1 HETATM 22 C C28 MWV . . . B 2 135.118 127.105 134.937 1 69.79 ? C28 MWV 2301 A 1 HETATM 23 C C29 MWV . . . B 2 135.689 125.881 134.643 1 69.79 ? C29 MWV 2301 A 1 HETATM 24 C C30 MWV . . . B 2 137.002 125.611 135.027 1 69.79 ? C30 MWV 2301 A 1 HETATM 25 C C32 MWV . . . B 2 137.749 126.563 135.708 1 69.79 ? C32 MWV 2301 A 1 HETATM 26 C C33 MWV . . . B 2 135.305 129.452 135.992 1 69.79 ? C33 MWV 2301 A 1 HETATM 27 C C34 MWV . . . B 2 133.845 129.601 135.527 1 69.79 ? C34 MWV 2301 A 1 HETATM 28 C C35 MWV . . . B 2 133.562 130.99 134.972 1 69.79 ? C35 MWV 2301 A 1 HETATM 29 C C36 MWV . . . B 2 132.71 129.086 136.394 1 69.79 ? C36 MWV 2301 A 1 HETATM 30 F F31 MWV . . . B 2 137.548 124.401 134.73 1 69.79 ? F31 MWV 2301 A 1 HETATM 31 N N10 MWV . . . B 2 133.091 128.456 139.75 1 69.79 ? N10 MWV 2301 A 1 HETATM 32 N N16 MWV . . . B 2 132.096 132.476 143.499 1 69.79 ? N16 MWV 2301 A 1 HETATM 33 N N23 MWV . . . B 2 134.25 132.742 143.533 1 69.79 ? N23 MWV 2301 A 1 HETATM 34 O O02 MWV . . . B 2 137.178 133.34 139.49 1 69.79 ? O02 MWV 2301 A 1 HETATM 35 O O05 MWV . . . B 2 136.127 132.684 137.117 1 69.79 ? O05 MWV 2301 A 1 HETATM 36 O O06 MWV . . . B 2 134.945 130.9 137.903 1 69.79 ? O06 MWV 2301 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 1096 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 36 #