data_7WLK
#
_model_server_result.job_id            fOa04AqXkAof7DOmh3tRmg 
_model_server_result.datetime_utc      '2025-08-31 12:35:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7wlk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":2308}' 
#
_entry.id    7WLK 
#
_exptl.entry_id    7WLK 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7WLK 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7WLK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 M N N 
? 5 O N N 
? 5 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 239 A CYS 239 1_555 A SG CYS 280 A CYS 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 269 A CYS 269 1_555 A SG CYS 326 A CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 A SG CYS 1335 A CYS 1335 1_555 A SG CYS 1349 A CYS 1349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 A SG CYS 1646 A CYS 1646 1_555 A SG CYS 1652 A CYS 1652 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf5 A SG CYS 1691 A CYS 1691 1_555 A SG CYS 1698 A CYS 1698 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A ND2 ASN 1342 A ASN 1342 1_555 N C1 NAG . A NAG 2313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale2 A ND2 ASN 1345 A ASN 1345 1_555 L C1 NAG . A NAG 2311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
metalc ? metalc1 A OE2 GLU 357 A GLU 357 1_555 E CA CA . A CA 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc2 A OD1 ASP 1380 A ASP 1380 1_555 E CA CA . A CA 2304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CBA Y01 sing 615 n n 
CBA CAB Y01 sing 616 n n 
CBA CAN Y01 sing 617 n n 
CAN CAJ Y01 sing 618 n n 
CAJ CAO Y01 sing 619 n n 
CAO CBB Y01 sing 620 n n 
CBB CAC Y01 sing 621 n n 
CBB CBE Y01 sing 622 n n 
CBE CAP Y01 sing 623 n n 
CBE CBI Y01 sing 624 n n 
CAP CAQ Y01 sing 625 n n 
CAQ CBG Y01 sing 626 n n 
CBG CBI Y01 sing 627 n n 
CBG CBD Y01 sing 628 n n 
CBI CAE Y01 sing 629 n n 
CBI CAU Y01 sing 630 n n 
CAU CAS Y01 sing 631 n n 
CAS CBF Y01 sing 632 n n 
CBF CBD Y01 sing 633 n n 
CBF CBH Y01 sing 634 n n 
CBD CAK Y01 sing 635 n n 
CAK CAI Y01 sing 636 n n 
CAI CAZ Y01 doub 637 n n 
CAZ CAV Y01 sing 638 n n 
CAZ CBH Y01 sing 639 n n 
CAV CBC Y01 sing 640 n n 
CBH CAD Y01 sing 641 n n 
CBH CAT Y01 sing 642 n n 
CAT CAR Y01 sing 643 n n 
CAR CBC Y01 sing 644 n n 
CBC OAW Y01 sing 645 n n 
OAW CAY Y01 sing 646 n n 
CAY OAG Y01 doub 647 n n 
CAY CAM Y01 sing 648 n n 
CAM CAL Y01 sing 649 n n 
CAL CAX Y01 sing 650 n n 
CAX OAH Y01 sing 651 n n 
CAX OAF Y01 doub 652 n n 
CAA HAA1 Y01 sing 653 n n 
CAA HAA2 Y01 sing 654 n n 
CAA HAA3 Y01 sing 655 n n 
CBA HBA Y01 sing 656 n n 
CAB HAB1 Y01 sing 657 n n 
CAB HAB2 Y01 sing 658 n n 
CAB HAB3 Y01 sing 659 n n 
CAN HAN1 Y01 sing 660 n n 
CAN HAN2 Y01 sing 661 n n 
CAJ HAJ1 Y01 sing 662 n n 
CAJ HAJ2 Y01 sing 663 n n 
CAO HAO1 Y01 sing 664 n n 
CAO HAO2 Y01 sing 665 n n 
CBB HBB Y01 sing 666 n n 
CAC HAC1 Y01 sing 667 n n 
CAC HAC2 Y01 sing 668 n n 
CAC HAC3 Y01 sing 669 n n 
CBE HBE Y01 sing 670 n n 
CAP HAP1 Y01 sing 671 n n 
CAP HAP2 Y01 sing 672 n n 
CAQ HAQ1 Y01 sing 673 n n 
CAQ HAQ2 Y01 sing 674 n n 
CBG HBG Y01 sing 675 n n 
CBD HBD Y01 sing 676 n n 
CAE HAE1 Y01 sing 677 n n 
CAE HAE2 Y01 sing 678 n n 
CAE HAE3 Y01 sing 679 n n 
CAU HAU1 Y01 sing 680 n n 
CAU HAU2 Y01 sing 681 n n 
CAS HAS1 Y01 sing 682 n n 
CAS HAS2 Y01 sing 683 n n 
CBF HBF Y01 sing 684 n n 
CAK HAK1 Y01 sing 685 n n 
CAK HAK2 Y01 sing 686 n n 
CAI HAI Y01 sing 687 n n 
CAV HAV1 Y01 sing 688 n n 
CAV HAV2 Y01 sing 689 n n 
CBC HBC Y01 sing 690 n n 
CAD HAD1 Y01 sing 691 n n 
CAD HAD2 Y01 sing 692 n n 
CAD HAD3 Y01 sing 693 n n 
CAT HAT1 Y01 sing 694 n n 
CAT HAT2 Y01 sing 695 n n 
CAR HAR1 Y01 sing 696 n n 
CAR HAR2 Y01 sing 697 n n 
CAM HAM1 Y01 sing 698 n n 
CAM HAM2 Y01 sing 699 n n 
CAL HAL1 Y01 sing 700 n n 
CAL HAL2 Y01 sing 701 n n 
OAH HAH Y01 sing 702 n n 
#
_atom_sites.entry_id                     7WLK 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 7TB A 1 2301 2250 7TB L02 . 
C 3 3PE A 1 2302 2268 3PE 3PE . 
D 3 3PE A 1 2303 2269 3PE 3PE . 
E 4 CA A 1 2304 2270 CA CA . 
F 3 3PE A 1 2305 2272 3PE 3PE . 
G 3 3PE A 1 2306 2273 3PE 3PE . 
H 3 3PE A 1 2307 2274 3PE 3PE . 
I 5 Y01 A 1 2308 2276 Y01 Y01 . 
J 5 Y01 A 1 2309 2277 Y01 Y01 . 
K 5 Y01 A 1 2310 2278 Y01 Y01 . 
L 6 NAG A 1 2311 2279 NAG NAG . 
M 5 Y01 A 1 2312 2281 Y01 Y01 . 
N 6 NAG A 1 2313 2282 NAG NAG . 
O 5 Y01 A 1 2314 2283 Y01 Y01 . 
P 3 3PE A 1 2315 2284 3PE 3PE . 
Q 5 Y01 A 1 2316 2285 Y01 Y01 . 
R 4 CA A 1 2317 2286 CA CA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . I 5 129.421 108.351 136.962 1 46.8 ? CAA Y01 2308 A 1 
HETATM 2 C CBA Y01 . . . I 5 128.344 107.269 136.969 1 46.8 ? CBA Y01 2308 A 1 
HETATM 3 C CAB Y01 . . . I 5 127.638 107.261 135.613 1 46.8 ? CAB Y01 2308 A 1 
HETATM 4 C CAN Y01 . . . I 5 128.999 105.91 137.215 1 46.8 ? CAN Y01 2308 A 1 
HETATM 5 C CAJ Y01 . . . I 5 129.555 105.867 138.638 1 46.8 ? CAJ Y01 2308 A 1 
HETATM 6 C CAO Y01 . . . I 5 130.184 104.501 138.902 1 46.8 ? CAO Y01 2308 A 1 
HETATM 7 C CBB Y01 . . . I 5 130.325 104.281 140.408 1 46.8 ? CBB Y01 2308 A 1 
HETATM 8 C CAC Y01 . . . I 5 128.979 104.591 141.062 1 46.8 ? CAC Y01 2308 A 1 
HETATM 9 C CBE Y01 . . . I 5 130.717 102.823 140.676 1 46.8 ? CBE Y01 2308 A 1 
HETATM 10 C CAP Y01 . . . I 5 131.733 102.35 139.606 1 46.8 ? CAP Y01 2308 A 1 
HETATM 11 C CAQ Y01 . . . I 5 132.939 101.75 140.376 1 46.8 ? CAQ Y01 2308 A 1 
HETATM 12 C CBG Y01 . . . I 5 132.299 101.373 141.714 1 46.8 ? CBG Y01 2308 A 1 
HETATM 13 C CBI Y01 . . . I 5 131.448 102.638 142.004 1 46.8 ? CBI Y01 2308 A 1 
HETATM 14 C CAE Y01 . . . I 5 132.355 103.835 142.269 1 46.8 ? CAE Y01 2308 A 1 
HETATM 15 C CAU Y01 . . . I 5 130.594 102.339 143.22 1 46.8 ? CAU Y01 2308 A 1 
HETATM 16 C CAS Y01 . . . I 5 131.501 101.954 144.397 1 46.8 ? CAS Y01 2308 A 1 
HETATM 17 C CBF Y01 . . . I 5 132.371 100.756 144.051 1 46.8 ? CBF Y01 2308 A 1 
HETATM 18 C CBD Y01 . . . I 5 133.255 101.13 142.866 1 46.8 ? CBD Y01 2308 A 1 
HETATM 19 C CAK Y01 . . . I 5 134.147 99.938 142.508 1 46.8 ? CAK Y01 2308 A 1 
HETATM 20 C CAI Y01 . . . I 5 134.91 99.495 143.718 1 46.8 ? CAI Y01 2308 A 1 
HETATM 21 C CAZ Y01 . . . I 5 134.403 99.528 144.908 1 46.8 ? CAZ Y01 2308 A 1 
HETATM 22 C CAV Y01 . . . I 5 135.214 98.951 146.054 1 46.8 ? CAV Y01 2308 A 1 
HETATM 23 C CBH Y01 . . . I 5 133.179 100.308 145.254 1 46.8 ? CBH Y01 2308 A 1 
HETATM 24 C CAD Y01 . . . I 5 133.627 101.543 146.033 1 46.8 ? CAD Y01 2308 A 1 
HETATM 25 C CAT Y01 . . . I 5 132.316 99.437 146.166 1 46.8 ? CAT Y01 2308 A 1 
HETATM 26 C CAR Y01 . . . I 5 133.123 99.009 147.395 1 46.8 ? CAR Y01 2308 A 1 
HETATM 27 C CBC Y01 . . . I 5 134.304 98.138 146.976 1 46.8 ? CBC Y01 2308 A 1 
HETATM 28 O OAW Y01 . . . I 5 135.062 97.758 148.153 1 46.8 ? OAW Y01 2308 A 1 
HETATM 29 C CAY Y01 . . . I 5 134.883 96.521 148.638 1 46.8 ? CAY Y01 2308 A 1 
HETATM 30 O OAG Y01 . . . I 5 133.765 96.097 148.81 1 46.8 ? OAG Y01 2308 A 1 
HETATM 31 C CAM Y01 . . . I 5 136.075 95.661 148.969 1 46.8 ? CAM Y01 2308 A 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           410 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#