data_7WLL # _model_server_result.job_id XTj7WtGmG_KzfRXryNlvZQ _model_server_result.datetime_utc '2025-08-31 00:55:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wll # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2301}' # _entry.id 7WLL # _exptl.entry_id 7WLL _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 461.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[1-[4,4-bis(4-fluorophenyl)butyl]piperidin-4-yl]-1~{H}-benzimidazol-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WLL _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WLL _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 239 A CYS 239 1_555 A SG CYS 280 A CYS 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 269 A CYS 269 1_555 A SG CYS 326 A CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 1335 A CYS 1335 1_555 A SG CYS 1349 A CYS 1349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 1646 A CYS 1646 1_555 A SG CYS 1652 A CYS 1652 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 A SG CYS 1691 A CYS 1691 1_555 A SG CYS 1698 A CYS 1698 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A ND2 ASN 1345 A ASN 1345 1_555 N C1 NAG . A NAG 2313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? metalc ? metalc1 A OE1 GLU 357 A GLU 357 1_555 H CA CA . A CA 2307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc2 A OE2 GLU 357 A GLU 357 1_555 H CA CA . A CA 2307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc3 A OD1 ASP 1380 A ASP 1380 1_555 H CA CA . A CA 2307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.085 ? metalc ? metalc4 A O GLY 1677 A GLY 1677 1_555 G CA CA . A CA 2306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.185 ? # _chem_comp.formula 'C28 H29 F2 N3 O' _chem_comp.formula_weight 461.546 _chem_comp.id 1II _chem_comp.mon_nstd_flag . _chem_comp.name 3-[1-[4,4-bis(4-fluorophenyl)butyl]piperidin-4-yl]-1~{H}-benzimidazol-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F01 C33 1II sing 1 n n F02 C34 1II sing 2 n n C33 C29 1II doub 3 n y C33 C31 1II sing 4 n y C32 C34 1II doub 5 n y C32 C28 1II sing 6 n y C29 C25 1II sing 7 n y C34 C30 1II sing 8 n y C31 C27 1II doub 9 n y C28 C21 1II doub 10 n y C30 C26 1II doub 11 n y C25 C20 1II doub 12 n y C27 C20 1II sing 13 n y C20 C17 1II sing 14 n n C21 C26 1II sing 15 n y C21 C17 1II sing 16 n n C17 C15 1II sing 17 n n C15 C13 1II sing 18 n n C12 C13 1II sing 19 n n C12 N04 1II sing 20 n n C11 N04 1II sing 21 n n C11 C09 1II sing 22 n n N04 C10 1II sing 23 n n C09 C07 1II sing 24 n n C10 C08 1II sing 25 n n C07 C08 1II sing 26 n n C07 N05 1II sing 27 n n N05 C14 1II sing 28 n n N05 C16 1II sing 29 n n C19 C14 1II doub 30 n y C19 C23 1II sing 31 n y O03 C16 1II doub 32 n n C14 C18 1II sing 33 n y C16 N06 1II sing 34 n n C23 C24 1II doub 35 n y C18 N06 1II sing 36 n n C18 C22 1II doub 37 n y C24 C22 1II sing 38 n y C07 H1 1II sing 39 n n C08 H2 1II sing 40 n n C08 H3 1II sing 41 n n C09 H4 1II sing 42 n n C09 H5 1II sing 43 n n C10 H6 1II sing 44 n n C10 H7 1II sing 45 n n C11 H8 1II sing 46 n n C11 H9 1II sing 47 n n C12 H10 1II sing 48 n n C12 H11 1II sing 49 n n C13 H12 1II sing 50 n n C13 H13 1II sing 51 n n C15 H14 1II sing 52 n n C15 H15 1II sing 53 n n C17 H16 1II sing 54 n n C19 H17 1II sing 55 n n C22 H18 1II sing 56 n n C23 H19 1II sing 57 n n C24 H20 1II sing 58 n n C25 H21 1II sing 59 n n C26 H22 1II sing 60 n n C27 H23 1II sing 61 n n C28 H24 1II sing 62 n n C29 H25 1II sing 63 n n C30 H26 1II sing 64 n n C31 H27 1II sing 65 n n C32 H28 1II sing 66 n n N06 H30 1II sing 67 n n # _atom_sites.entry_id 7WLL _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1II A 1 2301 2250 1II PIZ . C 3 3PE A 1 2302 2270 3PE 3PE . D 3 3PE A 1 2303 2271 3PE 3PE . E 3 3PE A 1 2304 2274 3PE 3PE . F 3 3PE A 1 2305 2275 3PE 3PE . G 4 CA A 1 2306 2276 CA CA . H 4 CA A 1 2307 2277 CA CA . I 5 Y01 A 1 2308 2278 Y01 Y01 . J 6 NAG A 1 2309 2282 NAG NAG . K 3 3PE A 1 2310 2283 3PE 3PE . L 5 Y01 A 1 2311 2286 Y01 Y01 . M 5 Y01 A 1 2312 2287 Y01 Y01 . N 6 NAG A 1 2313 2288 NAG NAG . O 5 Y01 A 1 2314 2290 Y01 Y01 . P 5 Y01 A 1 2315 2292 Y01 Y01 . Q 3 3PE A 1 2316 2293 3PE 3PE . R 5 Y01 A 1 2317 2294 Y01 Y01 . S 3 3PE A 1 2318 2296 3PE 3PE . T 5 Y01 A 1 2319 2297 Y01 Y01 . U 3 3PE A 1 2320 2298 3PE 3PE . V 3 3PE A 1 2321 2299 3PE 3PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C07 1II . . . B 2 134.314 131.008 142.085 1 58.95 ? C07 1II 2301 A 1 HETATM 2 C C08 1II . . . B 2 134.54 129.795 142.837 1 58.95 ? C08 1II 2301 A 1 HETATM 3 C C09 1II . . . B 2 133.516 130.842 140.863 1 58.95 ? C09 1II 2301 A 1 HETATM 4 C C10 1II . . . B 2 134.805 128.527 142.015 1 58.95 ? C10 1II 2301 A 1 HETATM 5 C C11 1II . . . B 2 133.047 129.418 140.574 1 58.95 ? C11 1II 2301 A 1 HETATM 6 C C12 1II . . . B 2 134.758 128.304 139.757 1 58.95 ? C12 1II 2301 A 1 HETATM 7 C C13 1II . . . B 2 136.216 128.79 139.867 1 58.95 ? C13 1II 2301 A 1 HETATM 8 C C14 1II . . . B 2 133.968 133.209 143.445 1 58.95 ? C14 1II 2301 A 1 HETATM 9 C C15 1II . . . B 2 136.815 129.264 138.54 1 58.95 ? C15 1II 2301 A 1 HETATM 10 C C16 1II . . . B 2 132.361 131.759 143.518 1 58.95 ? C16 1II 2301 A 1 HETATM 11 C C17 1II . . . B 2 135.93 128.9 137.35 1 58.95 ? C17 1II 2301 A 1 HETATM 12 C C18 1II . . . B 2 132.976 133.705 144.239 1 58.95 ? C18 1II 2301 A 1 HETATM 13 C C19 1II . . . B 2 135.139 133.975 143.236 1 58.95 ? C19 1II 2301 A 1 HETATM 14 C C20 1II . . . B 2 135.802 130.071 136.402 1 58.95 ? C20 1II 2301 A 1 HETATM 15 C C21 1II . . . B 2 136.57 127.852 136.465 1 58.95 ? C21 1II 2301 A 1 HETATM 16 C C22 1II . . . B 2 133.104 134.978 144.849 1 58.95 ? C22 1II 2301 A 1 HETATM 17 C C23 1II . . . B 2 135.268 135.223 143.837 1 58.95 ? C23 1II 2301 A 1 HETATM 18 C C24 1II . . . B 2 134.251 135.726 144.644 1 58.95 ? C24 1II 2301 A 1 HETATM 19 C C25 1II . . . B 2 134.624 130.249 135.706 1 58.95 ? C25 1II 2301 A 1 HETATM 20 C C26 1II . . . B 2 137.935 127.682 136.499 1 58.95 ? C26 1II 2301 A 1 HETATM 21 C C27 1II . . . B 2 136.875 130.918 136.227 1 58.95 ? C27 1II 2301 A 1 HETATM 22 C C28 1II . . . B 2 135.775 127.105 135.617 1 58.95 ? C28 1II 2301 A 1 HETATM 23 C C29 1II . . . B 2 134.503 131.309 134.832 1 58.95 ? C29 1II 2301 A 1 HETATM 24 C C30 1II . . . B 2 138.51 126.73 135.685 1 58.95 ? C30 1II 2301 A 1 HETATM 25 C C31 1II . . . B 2 136.753 131.976 135.347 1 58.95 ? C31 1II 2301 A 1 HETATM 26 C C32 1II . . . B 2 136.353 126.157 134.8 1 58.95 ? C32 1II 2301 A 1 HETATM 27 C C33 1II . . . B 2 135.569 132.17 134.654 1 58.95 ? C33 1II 2301 A 1 HETATM 28 C C34 1II . . . B 2 137.72 125.978 134.839 1 58.95 ? C34 1II 2301 A 1 HETATM 29 F F01 1II . . . B 2 135.447 133.221 133.793 1 58.95 ? F01 1II 2301 A 1 HETATM 30 F F02 1II . . . B 2 138.299 125.046 134.036 1 58.95 ? F02 1II 2301 A 1 HETATM 31 N N04 1II . . . B 2 134.086 128.44 140.747 1 58.95 ? N04 1II 2301 A 1 HETATM 32 N N05 1II . . . B 2 133.55 131.988 143.011 1 58.95 ? N05 1II 2301 A 1 HETATM 33 N N06 1II . . . B 2 131.986 132.781 144.263 1 58.95 ? N06 1II 2301 A 1 HETATM 34 O O03 1II . . . B 2 131.605 130.607 143.297 1 58.95 ? O03 1II 2301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 34 #