data_7WLW # _model_server_result.job_id qXa087qCf48kXeN7sqsFPw _model_server_result.datetime_utc '2024-11-21 14:01:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wlw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":705}' # _entry.id 7WLW # _exptl.entry_id 7WLW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 335.439 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3S)-1-(4,4-diphenylbut-3-enyl)piperidine-3-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WLW _cell.length_a 96.78 _cell.length_b 141.755 _cell.length_c 168.236 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WLW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 124 A CYS 148 1_555 A SG CYS 133 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf5 C SG CYS 146 H CYS 146 1_555 C SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc1 A O GLY 18 A GLY 42 1_555 F NA NA . A NA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc2 A O ALA 20 A ALA 44 1_555 E NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc3 A O VAL 21 A VAL 45 1_555 F NA NA . A NA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc4 A OD1 ASN 25 A ASN 49 1_555 E NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc5 A O SER 255 A SER 320 1_555 E NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? metalc ? metalc6 A OG SER 255 A SER 320 1_555 E NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc7 A O LEU 352 A LEU 417 1_555 F NA NA . A NA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc8 A OG SER 356 A SER 421 1_555 F NA NA . A NA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? # _chem_comp.formula 'C22 H25 N O2' _chem_comp.formula_weight 335.439 _chem_comp.id 1WR _chem_comp.mon_nstd_flag . _chem_comp.name '(3S)-1-(4,4-diphenylbut-3-enyl)piperidine-3-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SKF89976A # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C11 1WR doub 1 n n C23 C25 1WR doub 2 n y C23 C19 1WR sing 3 n y C11 O1 1WR sing 4 n n C11 C4 1WR sing 5 n n C25 C21 1WR sing 6 n y C19 C15 1WR doub 7 n y C5 C4 1WR sing 8 n n C5 N3 1WR sing 9 n n C4 C6 1WR sing 10 n n C9 N3 1WR sing 11 n n C9 C10 1WR sing 12 n n N3 C8 1WR sing 13 n n C12 C10 1WR sing 14 n n C12 C13 1WR doub 15 n n C21 C17 1WR doub 16 n y C15 C17 1WR sing 17 n y C15 C13 1WR sing 18 n n C13 C14 1WR sing 19 n n C6 C7 1WR sing 20 n n C8 C7 1WR sing 21 n n C14 C18 1WR doub 22 n y C14 C16 1WR sing 23 n y C18 C22 1WR sing 24 n y C16 C20 1WR doub 25 n y C22 C24 1WR doub 26 n y C20 C24 1WR sing 27 n y C4 H1 1WR sing 28 n n C5 H2 1WR sing 29 n n C5 H3 1WR sing 30 n n C6 H4 1WR sing 31 n n C6 H5 1WR sing 32 n n C7 H6 1WR sing 33 n n C7 H7 1WR sing 34 n n C8 H8 1WR sing 35 n n C8 H9 1WR sing 36 n n C9 H10 1WR sing 37 n n C9 H11 1WR sing 38 n n C10 H12 1WR sing 39 n n C10 H13 1WR sing 40 n n C12 H14 1WR sing 41 n n C16 H15 1WR sing 42 n n C17 H16 1WR sing 43 n n C18 H17 1WR sing 44 n n C19 H18 1WR sing 45 n n C20 H19 1WR sing 46 n n C21 H20 1WR sing 47 n n C22 H21 1WR sing 48 n n C23 H22 1WR sing 49 n n C24 H23 1WR sing 50 n n C25 H24 1WR sing 51 n n O1 H26 1WR sing 52 n n # _atom_sites.entry_id 7WLW _atom_sites.fract_transf_matrix[1][1] 0.010333 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007054 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005944 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CL A 1 701 3 CL CL . E 5 NA A 1 702 1 NA NA . F 5 NA A 1 703 2 NA NA . G 6 1WR A 1 704 1 1WR SKF . H 6 1WR A 1 705 2 1WR SKF . I 7 Y01 A 1 706 1 Y01 Y01 . J 8 DMU A 1 707 1 DMU DMU . K 9 CLR A 1 708 1 CLR CLR . L 10 HOH A 1 801 17 HOH HOH . L 10 HOH A 2 802 10 HOH HOH . L 10 HOH A 3 803 16 HOH HOH . L 10 HOH A 4 804 7 HOH HOH . L 10 HOH A 5 805 13 HOH HOH . L 10 HOH A 6 806 4 HOH HOH . L 10 HOH A 7 807 11 HOH HOH . L 10 HOH A 8 808 9 HOH HOH . L 10 HOH A 9 809 1 HOH HOH . L 10 HOH A 10 810 18 HOH HOH . L 10 HOH A 11 811 8 HOH HOH . L 10 HOH A 12 812 3 HOH HOH . L 10 HOH A 13 813 6 HOH HOH . L 10 HOH A 14 814 2 HOH HOH . L 10 HOH A 15 815 34 HOH HOH . L 10 HOH A 16 816 5 HOH HOH . L 10 HOH A 17 817 15 HOH HOH . L 10 HOH A 18 818 14 HOH HOH . L 10 HOH A 19 819 19 HOH HOH . L 10 HOH A 20 820 12 HOH HOH . M 10 HOH L 1 301 20 HOH HOH . M 10 HOH L 2 302 28 HOH HOH . M 10 HOH L 3 303 21 HOH HOH . M 10 HOH L 4 304 25 HOH HOH . M 10 HOH L 5 305 27 HOH HOH . M 10 HOH L 6 306 26 HOH HOH . M 10 HOH L 7 307 22 HOH HOH . M 10 HOH L 8 308 23 HOH HOH . M 10 HOH L 9 309 24 HOH HOH . N 10 HOH H 1 301 32 HOH HOH . N 10 HOH H 2 302 29 HOH HOH . N 10 HOH H 3 303 33 HOH HOH . N 10 HOH H 4 304 38 HOH HOH . N 10 HOH H 5 305 37 HOH HOH . N 10 HOH H 6 306 39 HOH HOH . N 10 HOH H 7 307 31 HOH HOH . N 10 HOH H 8 308 35 HOH HOH . N 10 HOH H 9 309 36 HOH HOH . N 10 HOH H 10 310 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 1WR . . . H 6 -6.107 7.722 23.777 0.88 81.38 ? C4 1WR 705 A 1 HETATM 2 C C5 1WR . . . H 6 -6.231 7.364 25.282 0.88 85.86 ? C5 1WR 705 A 1 HETATM 3 C C6 1WR . . . H 6 -5.917 6.497 22.899 0.88 74.41 ? C6 1WR 705 A 1 HETATM 4 C C7 1WR . . . H 6 -6.808 5.346 23.247 0.88 78.26 ? C7 1WR 705 A 1 HETATM 5 C C8 1WR . . . H 6 -6.99 5.155 24.747 0.88 91.21 ? C8 1WR 705 A 1 HETATM 6 C C9 1WR . . . H 6 -7.572 6.122 26.884 0.88 86.96 ? C9 1WR 705 A 1 HETATM 7 C C10 1WR . . . H 6 -8.64 7.079 27.454 0.88 91.33 ? C10 1WR 705 A 1 HETATM 8 C C11 1WR . . . H 6 -4.944 8.679 23.562 0.88 83.73 ? C11 1WR 705 A 1 HETATM 9 C C12 1WR . . . H 6 -9.008 6.673 28.9 0.88 90.59 ? C12 1WR 705 A 1 HETATM 10 C C13 1WR . . . H 6 -8.509 7.21 30.031 0.88 87.57 ? C13 1WR 705 A 1 HETATM 11 C C14 1WR . . . H 6 -7.469 8.345 30.036 0.88 87.59 ? C14 1WR 705 A 1 HETATM 12 C C15 1WR . . . H 6 -9.024 6.665 31.386 0.88 97.53 ? C15 1WR 705 A 1 HETATM 13 C C16 1WR . . . H 6 -7.78 9.558 30.644 0.88 85.62 ? C16 1WR 705 A 1 HETATM 14 C C17 1WR . . . H 6 -10.392 6.399 31.558 0.88 96.02 ? C17 1WR 705 A 1 HETATM 15 C C18 1WR . . . H 6 -6.212 8.169 29.453 0.88 90.53 ? C18 1WR 705 A 1 HETATM 16 C C19 1WR . . . H 6 -8.149 6.438 32.454 0.88 82.85 ? C19 1WR 705 A 1 HETATM 17 C C20 1WR . . . H 6 -6.838 10.581 30.653 0.88 84.47 ? C20 1WR 705 A 1 HETATM 18 C C21 1WR . . . H 6 -10.886 5.902 32.772 0.88 79.48 ? C21 1WR 705 A 1 HETATM 19 C C22 1WR . . . H 6 -5.274 9.199 29.456 0.88 84.46 ? C22 1WR 705 A 1 HETATM 20 C C23 1WR . . . H 6 -8.639 5.937 33.666 0.88 75.65 ? C23 1WR 705 A 1 HETATM 21 C C24 1WR . . . H 6 -5.593 10.405 30.063 0.88 82.99 ? C24 1WR 705 A 1 HETATM 22 C C25 1WR . . . H 6 -9.999 5.675 33.823 0.88 81.69 ? C25 1WR 705 A 1 HETATM 23 N N3 1WR . . . H 6 -7.338 6.398 25.457 0.88 87.53 ? N3 1WR 705 A 1 HETATM 24 O O1 1WR . . . H 6 -3.936 8.672 24.33 0.88 83.77 ? O1 1WR 705 A 1 HETATM 25 O O2 1WR . . . H 6 -5.006 9.484 22.598 0.88 89.01 ? O2 1WR 705 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #