data_7WM6 # _model_server_result.job_id WYOBhgzjUnbBXJas0pvY5A _model_server_result.datetime_utc '2025-07-30 19:21:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wm6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 7WM6 # _exptl.entry_id 7WM6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.18 _cell.angle_gamma 90 _cell.entry_id 7WM6 _cell.length_a 74.39 _cell.length_b 75.89 _cell.length_c 95.54 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WM6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,J,K 1 1 C,D,G,H,I,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 7WM6 _atom_sites.fract_transf_matrix[1][1] 0.013443 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001219 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013177 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01051 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SAH A 1 301 1 SAH SAH . F 3 SO4 B 1 301 6 SO4 SO4 . G 2 SAH C 1 301 2 SAH SAH . H 3 SO4 C 1 302 5 SO4 SO4 . I 2 SAH D 1 301 3 SAH SAH . J 4 HOH A 1 401 3 HOH HOH . J 4 HOH A 2 402 13 HOH HOH . J 4 HOH A 3 403 25 HOH HOH . J 4 HOH A 4 404 5 HOH HOH . J 4 HOH A 5 405 21 HOH HOH . J 4 HOH A 6 406 1 HOH HOH . J 4 HOH A 7 407 19 HOH HOH . J 4 HOH A 8 408 2 HOH HOH . J 4 HOH A 9 409 8 HOH HOH . J 4 HOH A 10 410 28 HOH HOH . J 4 HOH A 11 411 24 HOH HOH . J 4 HOH A 12 412 20 HOH HOH . J 4 HOH A 13 413 17 HOH HOH . J 4 HOH A 14 414 31 HOH HOH . J 4 HOH A 15 415 18 HOH HOH . J 4 HOH A 16 416 6 HOH HOH . J 4 HOH A 17 417 10 HOH HOH . J 4 HOH A 18 418 14 HOH HOH . J 4 HOH A 19 419 16 HOH HOH . J 4 HOH A 20 420 27 HOH HOH . K 4 HOH B 1 401 23 HOH HOH . K 4 HOH B 2 402 12 HOH HOH . K 4 HOH B 3 403 30 HOH HOH . K 4 HOH B 4 404 4 HOH HOH . K 4 HOH B 5 405 7 HOH HOH . L 4 HOH C 1 401 15 HOH HOH . L 4 HOH C 2 402 11 HOH HOH . L 4 HOH C 3 403 9 HOH HOH . L 4 HOH C 4 404 26 HOH HOH . M 4 HOH D 1 401 22 HOH HOH . M 4 HOH D 2 402 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . E 2 24.699 -3.544 40.398 1 32.54 ? N SAH 301 A 1 HETATM 2 C CA SAH . . . E 2 23.879 -4.045 41.501 1 34.92 ? CA SAH 301 A 1 HETATM 3 C CB SAH . . . E 2 24.401 -3.499 42.844 1 34.63 ? CB SAH 301 A 1 HETATM 4 C CG SAH . . . E 2 24.897 -2.058 42.941 1 30.21 ? CG SAH 301 A 1 HETATM 5 S SD SAH . . . E 2 25.374 -1.696 44.664 1 34.16 ? SD SAH 301 A 1 HETATM 6 C C SAH . . . E 2 22.376 -3.74 41.375 1 36.08 ? C SAH 301 A 1 HETATM 7 O O SAH . . . E 2 21.912 -3.042 40.455 1 34.45 ? O SAH 301 A 1 HETATM 8 O OXT SAH . . . E 2 21.591 -4.211 42.218 1 37.08 ? OXT SAH 301 A 1 HETATM 9 C C5' SAH . . . E 2 27.007 -1.051 44.263 1 29.99 ? C5' SAH 301 A 1 HETATM 10 C C4' SAH . . . E 2 28.007 -2.161 43.995 1 31.34 ? C4' SAH 301 A 1 HETATM 11 O O4' SAH . . . E 2 29.178 -1.544 43.527 1 28.18 ? O4' SAH 301 A 1 HETATM 12 C C3' SAH . . . E 2 28.37 -3.001 45.217 1 32.38 ? C3' SAH 301 A 1 HETATM 13 O O3' SAH . . . E 2 28.197 -4.385 44.919 1 27.74 ? O3' SAH 301 A 1 HETATM 14 C C2' SAH . . . E 2 29.837 -2.661 45.466 1 32.87 ? C2' SAH 301 A 1 HETATM 15 O O2' SAH . . . E 2 30.65 -3.741 45.897 1 27.01 ? O2' SAH 301 A 1 HETATM 16 C C1' SAH . . . E 2 30.288 -2.17 44.101 1 30.03 ? C1' SAH 301 A 1 HETATM 17 N N9 SAH . . . E 2 31.461 -1.304 44.22 1 27.5 ? N9 SAH 301 A 1 HETATM 18 C C8 SAH . . . E 2 31.69 -0.321 45.147 1 27.41 ? C8 SAH 301 A 1 HETATM 19 N N7 SAH . . . E 2 32.913 0.209 44.896 1 32.26 ? N7 SAH 301 A 1 HETATM 20 C C5 SAH . . . E 2 33.452 -0.431 43.828 1 32.89 ? C5 SAH 301 A 1 HETATM 21 C C6 SAH . . . E 2 34.663 -0.285 43.168 1 30.9 ? C6 SAH 301 A 1 HETATM 22 N N6 SAH . . . E 2 35.515 0.627 43.616 1 32.33 ? N6 SAH 301 A 1 HETATM 23 N N1 SAH . . . E 2 34.962 -1.074 42.071 1 29.01 ? N1 SAH 301 A 1 HETATM 24 C C2 SAH . . . E 2 34.036 -2.018 41.664 1 32.15 ? C2 SAH 301 A 1 HETATM 25 N N3 SAH . . . E 2 32.817 -2.176 42.32 1 30.58 ? N3 SAH 301 A 1 HETATM 26 C C4 SAH . . . E 2 32.544 -1.393 43.394 1 30.6 ? C4 SAH 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #