data_7WMV
#
_model_server_result.job_id            k1UiPeEibBNukTXjWvJraQ 
_model_server_result.datetime_utc      '2024-11-05 04:30:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7wmv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":701}' 
#
_entry.id    7WMV 
#
_exptl.entry_id    7WMV 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              601.797 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[2-(dimethylamino)ethyl]-2-methyl-2-[4-[4-[[2-methyl-5-[(2S,3R,4R,5S,6R)-6-methylsulfanyl-3,4,5-tris(oxidanyl)oxan-2-yl]phenyl]methyl]phenyl]butanoylamino]propanamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 255 A CYS 255 1_555 A SG CYS 511 A CYS 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf2 A SG CYS 345 A CYS 345 1_555 A SG CYS 351 A CYS 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf3 A SG CYS 517 A CYS 517 1_555 A SG CYS 522 A CYS 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
#
_chem_comp.formula           'C32 H47 N3 O6 S' 
_chem_comp.formula_weight    601.797 
_chem_comp.id                1YI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[2-(dimethylamino)ethyl]-2-methyl-2-[4-[4-[[2-methyl-5-[(2S,3R,4R,5S,6R)-6-methylsulfanyl-3,4,5-tris(oxidanyl)oxan-2-yl]phenyl]methyl]phenyl]butanoylamino]propanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     LX2761 
#
_atom_sites.entry_id                     7WMV 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          C 
_pdbx_nonpoly_scheme.entity_id        3 
_pdbx_nonpoly_scheme.mon_id           1YI 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      701 
_pdbx_nonpoly_scheme.auth_seq_num     1 
_pdbx_nonpoly_scheme.pdb_mon_id       1YI 
_pdbx_nonpoly_scheme.auth_mon_id      LIG 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C13 1YI . . . C 3 106.585 114.218 112.698 1 74.13 ? C13 1YI 701 A 1 
HETATM 2 C C15 1YI . . . C 3 106.05 112.633 114.547 1 102.13 ? C15 1YI 701 A 1 
HETATM 3 C C17 1YI . . . C 3 104.024 111.14 110.766 1 89.07 ? C17 1YI 701 A 1 
HETATM 4 C C20 1YI . . . C 3 103.626 108.779 110.527 1 83 ? C20 1YI 701 A 1 
HETATM 5 C C21 1YI . . . C 3 104.626 108.507 111.437 1 84.86 ? C21 1YI 701 A 1 
HETATM 6 C C22 1YI . . . C 3 102.234 110.466 109.205 1 85.32 ? C22 1YI 701 A 1 
HETATM 7 C C24 1YI . . . C 3 100.911 110.073 109.846 1 66.83 ? C24 1YI 701 A 1 
HETATM 8 C C26 1YI . . . C 3 92.545 108.407 114.139 1 95.68 ? C26 1YI 701 A 1 
HETATM 9 C C28 1YI . . . C 3 100.141 109.053 109.319 1 63.43 ? C28 1YI 701 A 1 
HETATM 10 C C11 1YI . . . C 3 105.694 113.343 111.806 1 75.91 ? C11 1YI 701 A 1 
HETATM 11 C C12 1YI . . . C 3 105.84 111.929 112.354 1 91.76 ? C12 1YI 701 A 1 
HETATM 12 C C14 1YI . . . C 3 105.99 114.087 114.099 1 85.43 ? C14 1YI 701 A 1 
HETATM 13 C C16 1YI . . . C 3 105.029 110.853 111.663 1 99.03 ? C16 1YI 701 A 1 
HETATM 14 C C18 1YI . . . C 3 105.319 109.548 112.006 1 100.47 ? C18 1YI 701 A 1 
HETATM 15 C C19 1YI . . . C 3 103.333 110.096 110.188 1 81.96 ? C19 1YI 701 A 1 
HETATM 16 C C23 1YI . . . C 3 104.801 110.649 116.2 1 88.38 ? C23 1YI 701 A 1 
HETATM 17 C C25 1YI . . . C 3 102.892 107.59 109.921 1 99.79 ? C25 1YI 701 A 1 
HETATM 18 C C27 1YI . . . C 3 100.517 110.745 110.979 1 88.8 ? C27 1YI 701 A 1 
HETATM 19 C C29 1YI . . . C 3 98.556 109.383 111.08 1 77.66 ? C29 1YI 701 A 1 
HETATM 20 C C30 1YI . . . C 3 97.245 109.006 111.756 1 83.68 ? C30 1YI 701 A 1 
HETATM 21 C C31 1YI . . . C 3 97.108 107.503 111.935 1 85.27 ? C31 1YI 701 A 1 
HETATM 22 C C32 1YI . . . C 3 99.328 110.41 111.602 1 90.75 ? C32 1YI 701 A 1 
HETATM 23 C C33 1YI . . . C 3 98.954 108.713 109.937 1 76.18 ? C33 1YI 701 A 1 
HETATM 24 C C34 1YI . . . C 3 96.107 107.127 113.039 1 98.03 ? C34 1YI 701 A 1 
HETATM 25 C C35 1YI . . . C 3 94.78 107.913 113.042 1 92.89 ? C35 1YI 701 A 1 
HETATM 26 C C36 1YI . . . C 3 91.696 107.883 115.298 1 113.05 ? C36 1YI 701 A 1 
HETATM 27 C C37 1YI . . . C 3 92.889 109.868 114.425 1 87.9 ? C37 1YI 701 A 1 
HETATM 28 C C38 1YI . . . C 3 91.711 108.277 112.861 1 77.85 ? C38 1YI 701 A 1 
HETATM 29 N N8 1YI . . . C 3 93.804 107.673 114.094 1 93.06 ? N8 1YI 701 A 1 
HETATM 30 N N9 1YI . . . C 3 90.968 106.633 115.149 1 106 ? N9 1YI 701 A 1 
HETATM 31 O O2 1YI . . . C 3 105.306 111.885 113.648 1 99.43 ? O2 1YI 701 A 1 
HETATM 32 O O3 1YI . . . C 3 106.05 113.444 110.457 1 80.66 ? O3 1YI 701 A 1 
HETATM 33 O O4 1YI . . . C 3 106.56 115.552 112.284 1 86.11 ? O4 1YI 701 A 1 
HETATM 34 O O5 1YI . . . C 3 106.634 114.878 115.05 1 99.48 ? O5 1YI 701 A 1 
HETATM 35 O O6 1YI . . . C 3 94.512 108.703 112.208 1 84.41 ? O6 1YI 701 A 1 
HETATM 36 O O7 1YI . . . C 3 91.625 108.487 116.316 1 101.67 ? O7 1YI 701 A 1 
HETATM 37 S S1 1YI . . . C 3 105.267 112.404 116.16 1 121.62 ? S1 1YI 701 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           37 
#