data_7WNM
#
_model_server_result.job_id            JjBYKgalBWBxgwkJwPduzw 
_model_server_result.datetime_utc      '2025-08-29 10:50:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7wnm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    7WNM 
#
_exptl.entry_id    7WNM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7WNM 
_cell.length_a            103.346 
_cell.length_b            103.346 
_cell.length_c            233.324 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7WNM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    'P 4abw 2nw' 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 133 B CYS 133 1_555 A SG CYS 141 B CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 A SG CYS 344 B CYS 344 1_555 A SG CYS 361 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 A SG CYS 530 B CYS 530 1_555 A SG CYS 542 B CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 B SG CYS 33 A CYS 336 1_555 B SG CYS 58 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf5 B SG CYS 76 A CYS 379 1_555 B SG CYS 129 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf6 B SG CYS 88 A CYS 391 1_555 B SG CYS 222 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf7 B SG CYS 177 A CYS 480 1_555 B SG CYS 185 A CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
covale ? covale1 B ND2 ASN 40 A ASN 343 1_555 D C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
metalc ? metalc1 A NE2 HIS 374 B HIS 374 1_555 C ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
metalc ? metalc2 A NE2 HIS 378 B HIS 378 1_555 C ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc3 A OE1 GLU 402 B GLU 402 1_555 C ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
metalc ? metalc4 A OE2 GLU 402 B GLU 402 1_555 C ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc5 C ZN ZN . B ZN 801 1_555 E O HOH . B HOH 944 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7WNM 
_atom_sites.fract_transf_matrix[1][1]    0.009676 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009676 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004286 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN B 1 801 1 ZN ZN . 
D 4 NAG A 1 601 604 NAG NAG . 
E 5 HOH B 1 901 9 HOH HOH . 
E 5 HOH B 2 902 98 HOH HOH . 
E 5 HOH B 3 903 61 HOH HOH . 
E 5 HOH B 4 904 48 HOH HOH . 
E 5 HOH B 5 905 69 HOH HOH . 
E 5 HOH B 6 906 90 HOH HOH . 
E 5 HOH B 7 907 68 HOH HOH . 
E 5 HOH B 8 908 32 HOH HOH . 
E 5 HOH B 9 909 31 HOH HOH . 
E 5 HOH B 10 910 18 HOH HOH . 
E 5 HOH B 11 911 42 HOH HOH . 
E 5 HOH B 12 912 11 HOH HOH . 
E 5 HOH B 13 913 6 HOH HOH . 
E 5 HOH B 14 914 91 HOH HOH . 
E 5 HOH B 15 915 21 HOH HOH . 
E 5 HOH B 16 916 7 HOH HOH . 
E 5 HOH B 17 917 40 HOH HOH . 
E 5 HOH B 18 918 24 HOH HOH . 
E 5 HOH B 19 919 3 HOH HOH . 
E 5 HOH B 20 920 10 HOH HOH . 
E 5 HOH B 21 921 26 HOH HOH . 
E 5 HOH B 22 922 46 HOH HOH . 
E 5 HOH B 23 923 13 HOH HOH . 
E 5 HOH B 24 924 52 HOH HOH . 
E 5 HOH B 25 925 25 HOH HOH . 
E 5 HOH B 26 926 50 HOH HOH . 
E 5 HOH B 27 927 22 HOH HOH . 
E 5 HOH B 28 928 54 HOH HOH . 
E 5 HOH B 29 929 36 HOH HOH . 
E 5 HOH B 30 930 49 HOH HOH . 
E 5 HOH B 31 931 44 HOH HOH . 
E 5 HOH B 32 932 37 HOH HOH . 
E 5 HOH B 33 933 4 HOH HOH . 
E 5 HOH B 34 934 34 HOH HOH . 
E 5 HOH B 35 935 20 HOH HOH . 
E 5 HOH B 36 936 89 HOH HOH . 
E 5 HOH B 37 937 30 HOH HOH . 
E 5 HOH B 38 938 38 HOH HOH . 
E 5 HOH B 39 939 82 HOH HOH . 
E 5 HOH B 40 940 8 HOH HOH . 
E 5 HOH B 41 941 43 HOH HOH . 
E 5 HOH B 42 942 16 HOH HOH . 
E 5 HOH B 43 943 92 HOH HOH . 
E 5 HOH B 44 944 1 HOH HOH . 
E 5 HOH B 45 945 93 HOH HOH . 
E 5 HOH B 46 946 81 HOH HOH . 
E 5 HOH B 47 947 102 HOH HOH . 
E 5 HOH B 48 948 77 HOH HOH . 
E 5 HOH B 49 949 19 HOH HOH . 
E 5 HOH B 50 950 57 HOH HOH . 
E 5 HOH B 51 951 85 HOH HOH . 
E 5 HOH B 52 952 45 HOH HOH . 
E 5 HOH B 53 953 79 HOH HOH . 
E 5 HOH B 54 954 64 HOH HOH . 
E 5 HOH B 55 955 67 HOH HOH . 
E 5 HOH B 56 956 39 HOH HOH . 
E 5 HOH B 57 957 29 HOH HOH . 
E 5 HOH B 58 958 94 HOH HOH . 
E 5 HOH B 59 959 35 HOH HOH . 
E 5 HOH B 60 960 70 HOH HOH . 
E 5 HOH B 61 961 101 HOH HOH . 
E 5 HOH B 62 962 51 HOH HOH . 
E 5 HOH B 63 963 100 HOH HOH . 
E 5 HOH B 64 964 41 HOH HOH . 
E 5 HOH B 65 965 47 HOH HOH . 
E 5 HOH B 66 966 14 HOH HOH . 
E 5 HOH B 67 967 55 HOH HOH . 
E 5 HOH B 68 968 2 HOH HOH . 
E 5 HOH B 69 969 56 HOH HOH . 
E 5 HOH B 70 970 73 HOH HOH . 
E 5 HOH B 71 971 62 HOH HOH . 
E 5 HOH B 72 972 71 HOH HOH . 
E 5 HOH B 73 973 88 HOH HOH . 
E 5 HOH B 74 974 97 HOH HOH . 
E 5 HOH B 75 975 72 HOH HOH . 
E 5 HOH B 76 976 80 HOH HOH . 
E 5 HOH B 77 977 104 HOH HOH . 
F 5 HOH A 1 701 78 HOH HOH . 
F 5 HOH A 2 702 74 HOH HOH . 
F 5 HOH A 3 703 95 HOH HOH . 
F 5 HOH A 4 704 27 HOH HOH . 
F 5 HOH A 5 705 33 HOH HOH . 
F 5 HOH A 6 706 28 HOH HOH . 
F 5 HOH A 7 707 17 HOH HOH . 
F 5 HOH A 8 708 5 HOH HOH . 
F 5 HOH A 9 709 15 HOH HOH . 
F 5 HOH A 10 710 76 HOH HOH . 
F 5 HOH A 11 711 59 HOH HOH . 
F 5 HOH A 12 712 12 HOH HOH . 
F 5 HOH A 13 713 23 HOH HOH . 
F 5 HOH A 14 714 99 HOH HOH . 
F 5 HOH A 15 715 60 HOH HOH . 
F 5 HOH A 16 716 66 HOH HOH . 
F 5 HOH A 17 717 58 HOH HOH . 
F 5 HOH A 18 718 84 HOH HOH . 
F 5 HOH A 19 719 65 HOH HOH . 
F 5 HOH A 20 720 63 HOH HOH . 
F 5 HOH A 21 721 86 HOH HOH . 
F 5 HOH A 22 722 83 HOH HOH . 
F 5 HOH A 23 723 75 HOH HOH . 
F 5 HOH A 24 724 53 HOH HOH . 
F 5 HOH A 25 725 87 HOH HOH . 
F 5 HOH A 26 726 96 HOH HOH . 
F 5 HOH A 27 727 103 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . D 4 -42.291 11.968 44.152 1 72.56 ? C1 NAG 601 A 1 
HETATM 2 C C2 NAG . . . D 4 -41.133 12.155 45.134 1 79.2 ? C2 NAG 601 A 1 
HETATM 3 C C3 NAG . . . D 4 -40.032 11.138 44.847 1 85.64 ? C3 NAG 601 A 1 
HETATM 4 C C4 NAG . . . D 4 -40.597 9.724 44.865 1 97.74 ? C4 NAG 601 A 1 
HETATM 5 C C5 NAG . . . D 4 -41.781 9.608 43.908 1 92.04 ? C5 NAG 601 A 1 
HETATM 6 C C6 NAG . . . D 4 -42.474 8.267 43.998 1 88.74 ? C6 NAG 601 A 1 
HETATM 7 C C7 NAG . . . D 4 -40.64 14.355 46.111 1 83.21 ? C7 NAG 601 A 1 
HETATM 8 C C8 NAG . . . D 4 -40.048 15.712 45.87 1 70.63 ? C8 NAG 601 A 1 
HETATM 9 N N2 NAG . . . D 4 -40.607 13.509 45.075 1 87.23 ? N2 NAG 601 A 1 
HETATM 10 O O3 NAG . . . D 4 -39.002 11.263 45.821 1 70.58 ? O3 NAG 601 A 1 
HETATM 11 O O4 NAG . . . D 4 -39.59 8.791 44.488 1 80.75 ? O4 NAG 601 A 1 
HETATM 12 O O5 NAG . . . D 4 -42.768 10.606 44.218 1 88.63 ? O5 NAG 601 A 1 
HETATM 13 O O6 NAG . . . D 4 -43.233 7.981 42.831 1 74.2 ? O6 NAG 601 A 1 
HETATM 14 O O7 NAG . . . D 4 -41.127 14.042 47.192 1 73.2 ? O7 NAG 601 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           33 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#