data_7WNV
#
_model_server_result.job_id            zivizXuGO3wzHJGHdQXsxQ 
_model_server_result.datetime_utc      '2024-10-16 23:24:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7wnv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":601}' 
#
_entry.id    7WNV 
#
_exptl.entry_id    7WNV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              504.597 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (~{Z})-4-[2-[4-[[2-(4-hydroxyphenyl)-6-oxidanyl-1-benzothiophen-3-yl]oxy]phenoxy]ethylamino]-~{N},~{N}-dimethyl-but-2-enamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90.31 
_cell.angle_beta          105.39 
_cell.angle_gamma         117.15 
_cell.entry_id            7WNV 
_cell.length_a            53.928 
_cell.length_b            58.834 
_cell.length_c            93.062 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7WNV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J 1 1 
C,D,G,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 235 A CYS 530 1_555 E C24 2I9 . A 2I9 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.775 ? 
covale ? covale2 B SG CYS 235 B CYS 530 1_555 F C24 2I9 . B 2I9 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.677 ? 
covale ? covale3 C SG CYS 235 C CYS 530 1_555 G C24 2I9 . C 2I9 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? 
covale ? covale4 D SG CYS 235 D CYS 530 1_555 H C23 2I9 . D 2I9 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.79 ? 
#
_chem_comp.formula           'C28 H28 N2 O5 S' 
_chem_comp.formula_weight    504.597 
_chem_comp.id                2I9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (~{Z})-4-[2-[4-[[2-(4-hydroxyphenyl)-6-oxidanyl-1-benzothiophen-3-yl]oxy]phenoxy]ethylamino]-~{N},~{N}-dimethyl-but-2-enamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O07 C02 2I9 sing 1 n n 
C03 C02 2I9 sing 2 n y 
C03 C04 2I9 doub 3 n y 
C02 C01 2I9 doub 4 n y 
S08 C04 2I9 sing 5 n y 
S08 C09 2I9 sing 6 n y 
C31 C32 2I9 doub 7 n y 
C31 C12 2I9 sing 8 n y 
C04 C05 2I9 sing 9 n y 
C32 C33 2I9 sing 10 n y 
C01 C06 2I9 sing 11 n y 
C09 C12 2I9 sing 12 n n 
C09 C10 2I9 doub 13 n y 
C05 C06 2I9 doub 14 n y 
C05 C10 2I9 sing 15 n y 
C12 C35 2I9 doub 16 n y 
C10 O11 2I9 sing 17 n n 
C33 O36 2I9 sing 18 n n 
C33 C34 2I9 doub 19 n y 
O11 C13 2I9 sing 20 n n 
C35 C34 2I9 sing 21 n y 
C13 C18 2I9 doub 22 n y 
C13 C14 2I9 sing 23 n y 
C18 C17 2I9 sing 24 n y 
C14 C15 2I9 doub 25 n y 
C17 C16 2I9 doub 26 n y 
C15 C16 2I9 sing 27 n y 
C16 O19 2I9 sing 28 n n 
O19 C20 2I9 sing 29 n n 
C20 C21 2I9 sing 30 n n 
C21 N22 2I9 sing 31 n n 
N22 C23 2I9 sing 32 n n 
O28 C26 2I9 doub 33 n n 
C23 C24 2I9 sing 34 n n 
C30 N27 2I9 sing 35 n n 
C26 N27 2I9 sing 36 n n 
C26 C25 2I9 sing 37 n n 
N27 C29 2I9 sing 38 n n 
C24 C25 2I9 doub 39 z n 
C14 H1 2I9 sing 40 n n 
C15 H2 2I9 sing 41 n n 
C17 H3 2I9 sing 42 n n 
C18 H4 2I9 sing 43 n n 
C20 H5 2I9 sing 44 n n 
C20 H6 2I9 sing 45 n n 
C21 H7 2I9 sing 46 n n 
C21 H8 2I9 sing 47 n n 
C01 H9 2I9 sing 48 n n 
C03 H10 2I9 sing 49 n n 
C06 H11 2I9 sing 50 n n 
C23 H12 2I9 sing 51 n n 
C23 H13 2I9 sing 52 n n 
C24 H14 2I9 sing 53 n n 
C25 H15 2I9 sing 54 n n 
C29 H16 2I9 sing 55 n n 
C29 H17 2I9 sing 56 n n 
C29 H18 2I9 sing 57 n n 
C30 H19 2I9 sing 58 n n 
C30 H20 2I9 sing 59 n n 
C30 H21 2I9 sing 60 n n 
C31 H22 2I9 sing 61 n n 
C32 H23 2I9 sing 62 n n 
C34 H24 2I9 sing 63 n n 
C35 H25 2I9 sing 64 n n 
N22 H26 2I9 sing 65 n n 
O07 H28 2I9 sing 66 n n 
O36 H29 2I9 sing 67 n n 
#
_atom_sites.entry_id                     7WNV 
_atom_sites.fract_transf_matrix[1][1]    0.018543 
_atom_sites.fract_transf_matrix[1][2]    0.009508 
_atom_sites.fract_transf_matrix[1][3]    0.006579 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019101 
_atom_sites.fract_transf_matrix[2][3]    0.002848 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011269 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 2I9 A 1 601 1 2I9 CO9 . 
F 2 2I9 B 1 601 2 2I9 CO9 . 
G 2 2I9 C 1 601 3 2I9 CO9 . 
H 2 2I9 D 1 601 4 2I9 CO9 . 
I 3 HOH A 1 701 142 HOH HOH . 
I 3 HOH A 2 702 122 HOH HOH . 
I 3 HOH A 3 703 46 HOH HOH . 
I 3 HOH A 4 704 5 HOH HOH . 
I 3 HOH A 5 705 37 HOH HOH . 
I 3 HOH A 6 706 170 HOH HOH . 
I 3 HOH A 7 707 92 HOH HOH . 
I 3 HOH A 8 708 54 HOH HOH . 
I 3 HOH A 9 709 51 HOH HOH . 
I 3 HOH A 10 710 42 HOH HOH . 
I 3 HOH A 11 711 67 HOH HOH . 
I 3 HOH A 12 712 26 HOH HOH . 
I 3 HOH A 13 713 13 HOH HOH . 
I 3 HOH A 14 714 110 HOH HOH . 
I 3 HOH A 15 715 64 HOH HOH . 
I 3 HOH A 16 716 38 HOH HOH . 
I 3 HOH A 17 717 173 HOH HOH . 
I 3 HOH A 18 718 50 HOH HOH . 
I 3 HOH A 19 719 100 HOH HOH . 
I 3 HOH A 20 720 102 HOH HOH . 
I 3 HOH A 21 721 113 HOH HOH . 
I 3 HOH A 22 722 201 HOH HOH . 
I 3 HOH A 23 723 157 HOH HOH . 
I 3 HOH A 24 724 57 HOH HOH . 
J 3 HOH B 1 701 15 HOH HOH . 
J 3 HOH B 2 702 11 HOH HOH . 
J 3 HOH B 3 703 74 HOH HOH . 
J 3 HOH B 4 704 55 HOH HOH . 
J 3 HOH B 5 705 8 HOH HOH . 
J 3 HOH B 6 706 23 HOH HOH . 
J 3 HOH B 7 707 43 HOH HOH . 
J 3 HOH B 8 708 72 HOH HOH . 
J 3 HOH B 9 709 32 HOH HOH . 
J 3 HOH B 10 710 94 HOH HOH . 
J 3 HOH B 11 711 36 HOH HOH . 
J 3 HOH B 12 712 25 HOH HOH . 
J 3 HOH B 13 713 61 HOH HOH . 
J 3 HOH B 14 714 52 HOH HOH . 
J 3 HOH B 15 715 39 HOH HOH . 
J 3 HOH B 16 716 139 HOH HOH . 
J 3 HOH B 17 717 249 HOH HOH . 
J 3 HOH B 18 718 80 HOH HOH . 
J 3 HOH B 19 719 161 HOH HOH . 
K 3 HOH C 1 701 3 HOH HOH . 
K 3 HOH C 2 702 35 HOH HOH . 
K 3 HOH C 3 703 30 HOH HOH . 
K 3 HOH C 4 704 41 HOH HOH . 
K 3 HOH C 5 705 21 HOH HOH . 
K 3 HOH C 6 706 33 HOH HOH . 
K 3 HOH C 7 707 109 HOH HOH . 
K 3 HOH C 8 708 60 HOH HOH . 
K 3 HOH C 9 709 59 HOH HOH . 
K 3 HOH C 10 710 130 HOH HOH . 
K 3 HOH C 11 711 124 HOH HOH . 
K 3 HOH C 12 712 163 HOH HOH . 
K 3 HOH C 13 713 105 HOH HOH . 
K 3 HOH C 14 714 209 HOH HOH . 
K 3 HOH C 15 715 73 HOH HOH . 
K 3 HOH C 16 716 131 HOH HOH . 
L 3 HOH D 1 701 6 HOH HOH . 
L 3 HOH D 2 702 85 HOH HOH . 
L 3 HOH D 3 703 28 HOH HOH . 
L 3 HOH D 4 704 4 HOH HOH . 
L 3 HOH D 5 705 27 HOH HOH . 
L 3 HOH D 6 706 111 HOH HOH . 
L 3 HOH D 7 707 17 HOH HOH . 
L 3 HOH D 8 708 49 HOH HOH . 
L 3 HOH D 9 709 84 HOH HOH . 
L 3 HOH D 10 710 70 HOH HOH . 
L 3 HOH D 11 711 118 HOH HOH . 
L 3 HOH D 12 712 16 HOH HOH . 
L 3 HOH D 13 713 22 HOH HOH . 
L 3 HOH D 14 714 14 HOH HOH . 
L 3 HOH D 15 715 252 HOH HOH . 
L 3 HOH D 16 716 181 HOH HOH . 
L 3 HOH D 17 717 20 HOH HOH . 
L 3 HOH D 18 718 101 HOH HOH . 
L 3 HOH D 19 719 208 HOH HOH . 
L 3 HOH D 20 720 141 HOH HOH . 
L 3 HOH D 21 721 48 HOH HOH . 
L 3 HOH D 22 722 132 HOH HOH . 
L 3 HOH D 23 723 112 HOH HOH . 
L 3 HOH D 24 724 40 HOH HOH . 
L 3 HOH D 25 725 34 HOH HOH . 
L 3 HOH D 26 726 178 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 2I9 . . . H 2 13.927 -21.241 -54.775 1 38.76 ? C10 2I9 601 D 1 
HETATM 2 C C12 2I9 . . . H 2 15.206 -19.121 -55.532 1 42.84 ? C12 2I9 601 D 1 
HETATM 3 C C13 2I9 . . . H 2 11.708 -20.504 -54.774 1 38.44 ? C13 2I9 601 D 1 
HETATM 4 C C14 2I9 . . . H 2 11.818 -20.205 -53.32 1 37.92 ? C14 2I9 601 D 1 
HETATM 5 C C15 2I9 . . . H 2 10.639 -19.626 -52.579 1 39.93 ? C15 2I9 601 D 1 
HETATM 6 C C16 2I9 . . . H 2 9.32 -19.332 -53.247 1 43.35 ? C16 2I9 601 D 1 
HETATM 7 C C17 2I9 . . . H 2 9.196 -19.613 -54.722 1 44.3 ? C17 2I9 601 D 1 
HETATM 8 C C18 2I9 . . . H 2 10.397 -20.197 -55.466 1 41.75 ? C18 2I9 601 D 1 
HETATM 9 C C20 2I9 . . . H 2 6.997 -19.05 -52.701 1 47.24 ? C20 2I9 601 D 1 
HETATM 10 C C21 2I9 . . . H 2 6.399 -17.788 -53.326 1 52.5 ? C21 2I9 601 D 1 
HETATM 11 C C01 2I9 . . . H 2 13.826 -24.759 -52.655 1 41.28 ? C01 2I9 601 D 1 
HETATM 12 C C02 2I9 . . . H 2 15.195 -24.624 -52.104 1 35.98 ? C02 2I9 601 D 1 
HETATM 13 C C03 2I9 . . . H 2 16.079 -23.467 -52.426 1 36.87 ? C03 2I9 601 D 1 
HETATM 14 C C04 2I9 . . . H 2 15.563 -22.356 -53.344 1 38.95 ? C04 2I9 601 D 1 
HETATM 15 C C05 2I9 . . . H 2 14.239 -22.497 -53.872 1 37.94 ? C05 2I9 601 D 1 
HETATM 16 C C06 2I9 . . . H 2 13.332 -23.683 -53.558 1 37.67 ? C06 2I9 601 D 1 
HETATM 17 C C09 2I9 . . . H 2 15.119 -20.416 -54.771 1 43.15 ? C09 2I9 601 D 1 
HETATM 18 C C23 2I9 . . . H 2 4.178 -17.009 -53.309 1 57.39 ? C23 2I9 601 D 1 
HETATM 19 C C24 2I9 . . . H 2 3.507 -15.691 -52.919 1 63.46 ? C24 2I9 601 D 1 
HETATM 20 C C25 2I9 . . . H 2 4.158 -14.614 -52.477 1 59.32 ? C25 2I9 601 D 1 
HETATM 21 C C26 2I9 . . . H 2 5.679 -14.476 -52.3 1 59.01 ? C26 2I9 601 D 1 
HETATM 22 C C29 2I9 . . . H 2 5.314 -12.747 -50.547 1 57.49 ? C29 2I9 601 D 1 
HETATM 23 C C30 2I9 . . . H 2 7.617 -13.351 -51.129 1 55.55 ? C30 2I9 601 D 1 
HETATM 24 C C31 2I9 . . . H 2 13.933 -18.486 -55.981 1 49.1 ? C31 2I9 601 D 1 
HETATM 25 C C32 2I9 . . . H 2 13.934 -17.192 -56.756 1 52.21 ? C32 2I9 601 D 1 
HETATM 26 C C33 2I9 . . . H 2 15.232 -16.522 -57.062 1 50.07 ? C33 2I9 601 D 1 
HETATM 27 C C34 2I9 . . . H 2 16.518 -17.157 -56.614 1 51.13 ? C34 2I9 601 D 1 
HETATM 28 C C35 2I9 . . . H 2 16.506 -18.46 -55.859 1 46.73 ? C35 2I9 601 D 1 
HETATM 29 N N22 2I9 . . . H 2 5.342 -17.289 -52.498 1 49.16 ? N22 2I9 601 D 1 
HETATM 30 N N27 2I9 . . . H 2 6.208 -13.536 -51.34 1 59.17 ? N27 2I9 601 D 1 
HETATM 31 O O07 2I9 . . . H 2 15.636 -25.605 -51.304 1 40.81 ? O07 2I9 601 D 1 
HETATM 32 O O11 2I9 . . . H 2 12.766 -21.038 -55.466 1 39.34 ? O11 2I9 601 D 1 
HETATM 33 O O19 2I9 . . . H 2 8.328 -18.799 -52.447 1 50.47 ? O19 2I9 601 D 1 
HETATM 34 O O28 2I9 . . . H 2 6.433 -15.112 -52.936 1 57.24 ? O28 2I9 601 D 1 
HETATM 35 O O36 2I9 . . . H 2 15.219 -15.344 -57.775 1 57.65 ? O36 2I9 601 D 1 
HETATM 36 S S08 2I9 . . . H 2 16.184 -21.051 -53.871 1 41.46 ? S08 2I9 601 D 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          23 
_model_server_stats.element_count           36 
#