data_7WO1 # _model_server_result.job_id met6y6rhc1JIgx1q-Q0Q8w _model_server_result.datetime_utc '2025-01-28 02:17:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wo1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7WO1 # _exptl.entry_id 7WO1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 492.651 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(2S)-3-methyl-1-[[(2S)-4-methyl-1-oxidanylidene-1-[[(2S)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepiperidin-3-yl]propan-2-yl]amino]pentan-2-yl]amino]-1-oxidanylidene-butan-2-yl]cyclohexanecarboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WO1 _cell.length_a 45.088 _cell.length_b 62.468 _cell.length_c 104.626 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WO1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 62.468 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C02 _struct_conn.ptnr2_label_comp_id 3XI _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 3XI _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.766 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C26 H44 N4 O5' _chem_comp.formula_weight 492.651 _chem_comp.id 3XI _chem_comp.mon_nstd_flag . _chem_comp.name N-[(2S)-3-methyl-1-[[(2S)-4-methyl-1-oxidanylidene-1-[[(2S)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepiperidin-3-yl]propan-2-yl]amino]pentan-2-yl]amino]-1-oxidanylidene-butan-2-yl]cyclohexanecarboxamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C02 3XI doub 1 n n C02 C03 3XI sing 2 n n C09 C08 3XI sing 3 n n C03 N04 3XI sing 4 n n C03 C28 3XI sing 5 n n C07 C08 3XI sing 6 n n C07 C06 3XI sing 7 n n N04 C05 3XI sing 8 n n C28 C29 3XI sing 9 n n O27 C05 3XI doub 10 n n C08 C10 3XI sing 11 n n C05 C06 3XI sing 12 n n C06 N11 3XI sing 13 n n C29 C30 3XI sing 14 n n C29 C34 3XI sing 15 n n C30 C31 3XI sing 16 n n N11 C12 3XI sing 17 n n O35 C34 3XI doub 18 n n C31 C32 3XI sing 19 n n C34 N33 3XI sing 20 n n C12 O26 3XI doub 21 n n C12 C13 3XI sing 22 n n N33 C32 3XI sing 23 n n C16 C14 3XI sing 24 n n C13 C14 3XI sing 25 n n C13 N17 3XI sing 26 n n C14 C15 3XI sing 27 n n N17 C18 3XI sing 28 n n O25 C18 3XI doub 29 n n C18 C19 3XI sing 30 n n C20 C19 3XI sing 31 n n C20 C21 3XI sing 32 n n C19 C24 3XI sing 33 n n C21 C22 3XI sing 34 n n C24 C23 3XI sing 35 n n C22 C23 3XI sing 36 n n C10 H1 3XI sing 37 n n C10 H2 3XI sing 38 n n C10 H3 3XI sing 39 n n C13 H4 3XI sing 40 n n C15 H5 3XI sing 41 n n C15 H6 3XI sing 42 n n C15 H7 3XI sing 43 n n C20 H8 3XI sing 44 n n C20 H9 3XI sing 45 n n C21 H10 3XI sing 46 n n C21 H11 3XI sing 47 n n C22 H12 3XI sing 48 n n C22 H13 3XI sing 49 n n C24 H14 3XI sing 50 n n C24 H15 3XI sing 51 n n C28 H16 3XI sing 52 n n C28 H17 3XI sing 53 n n C02 H18 3XI sing 54 n n C03 H19 3XI sing 55 n n C06 H20 3XI sing 56 n n C07 H21 3XI sing 57 n n C07 H22 3XI sing 58 n n C08 H23 3XI sing 59 n n C09 H24 3XI sing 60 n n C09 H25 3XI sing 61 n n C09 H26 3XI sing 62 n n C14 H27 3XI sing 63 n n C16 H28 3XI sing 64 n n C16 H29 3XI sing 65 n n C16 H30 3XI sing 66 n n C19 H31 3XI sing 67 n n C23 H32 3XI sing 68 n n C23 H33 3XI sing 69 n n C29 H34 3XI sing 70 n n C30 H35 3XI sing 71 n n C30 H36 3XI sing 72 n n C31 H37 3XI sing 73 n n C31 H38 3XI sing 74 n n C32 H39 3XI sing 75 n n C32 H40 3XI sing 76 n n N04 H41 3XI sing 77 n n N11 H42 3XI sing 78 n n N17 H43 3XI sing 79 n n N33 H44 3XI sing 80 n n # _atom_sites.entry_id 7WO1 _atom_sites.fract_transf_matrix[1][1] 0.022179 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016008 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009558 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3XI A 1 401 0 3XI LIG . C 3 HOH A 1 501 24 HOH HOH . C 3 HOH A 2 502 91 HOH HOH . C 3 HOH A 3 503 53 HOH HOH . C 3 HOH A 4 504 80 HOH HOH . C 3 HOH A 5 505 87 HOH HOH . C 3 HOH A 6 506 88 HOH HOH . C 3 HOH A 7 507 15 HOH HOH . C 3 HOH A 8 508 31 HOH HOH . C 3 HOH A 9 509 10 HOH HOH . C 3 HOH A 10 510 49 HOH HOH . C 3 HOH A 11 511 30 HOH HOH . C 3 HOH A 12 512 71 HOH HOH . C 3 HOH A 13 513 17 HOH HOH . C 3 HOH A 14 514 28 HOH HOH . C 3 HOH A 15 515 51 HOH HOH . C 3 HOH A 16 516 41 HOH HOH . C 3 HOH A 17 517 23 HOH HOH . C 3 HOH A 18 518 21 HOH HOH . C 3 HOH A 19 519 48 HOH HOH . C 3 HOH A 20 520 94 HOH HOH . C 3 HOH A 21 521 9 HOH HOH . C 3 HOH A 22 522 116 HOH HOH . C 3 HOH A 23 523 26 HOH HOH . C 3 HOH A 24 524 46 HOH HOH . C 3 HOH A 25 525 12 HOH HOH . C 3 HOH A 26 526 109 HOH HOH . C 3 HOH A 27 527 20 HOH HOH . C 3 HOH A 28 528 73 HOH HOH . C 3 HOH A 29 529 50 HOH HOH . C 3 HOH A 30 530 2 HOH HOH . C 3 HOH A 31 531 8 HOH HOH . C 3 HOH A 32 532 38 HOH HOH . C 3 HOH A 33 533 77 HOH HOH . C 3 HOH A 34 534 90 HOH HOH . C 3 HOH A 35 535 13 HOH HOH . C 3 HOH A 36 536 81 HOH HOH . C 3 HOH A 37 537 36 HOH HOH . C 3 HOH A 38 538 27 HOH HOH . C 3 HOH A 39 539 124 HOH HOH . C 3 HOH A 40 540 130 HOH HOH . C 3 HOH A 41 541 3 HOH HOH . C 3 HOH A 42 542 6 HOH HOH . C 3 HOH A 43 543 85 HOH HOH . C 3 HOH A 44 544 1 HOH HOH . C 3 HOH A 45 545 34 HOH HOH . C 3 HOH A 46 546 122 HOH HOH . C 3 HOH A 47 547 45 HOH HOH . C 3 HOH A 48 548 63 HOH HOH . C 3 HOH A 49 549 14 HOH HOH . C 3 HOH A 50 550 84 HOH HOH . C 3 HOH A 51 551 22 HOH HOH . C 3 HOH A 52 552 120 HOH HOH . C 3 HOH A 53 553 35 HOH HOH . C 3 HOH A 54 554 102 HOH HOH . C 3 HOH A 55 555 19 HOH HOH . C 3 HOH A 56 556 60 HOH HOH . C 3 HOH A 57 557 47 HOH HOH . C 3 HOH A 58 558 134 HOH HOH . C 3 HOH A 59 559 107 HOH HOH . C 3 HOH A 60 560 40 HOH HOH . C 3 HOH A 61 561 69 HOH HOH . C 3 HOH A 62 562 37 HOH HOH . C 3 HOH A 63 563 44 HOH HOH . C 3 HOH A 64 564 110 HOH HOH . C 3 HOH A 65 565 104 HOH HOH . C 3 HOH A 66 566 4 HOH HOH . C 3 HOH A 67 567 7 HOH HOH . C 3 HOH A 68 568 98 HOH HOH . C 3 HOH A 69 569 58 HOH HOH . C 3 HOH A 70 570 25 HOH HOH . C 3 HOH A 71 571 105 HOH HOH . C 3 HOH A 72 572 11 HOH HOH . C 3 HOH A 73 573 5 HOH HOH . C 3 HOH A 74 574 42 HOH HOH . C 3 HOH A 75 575 70 HOH HOH . C 3 HOH A 76 576 131 HOH HOH . C 3 HOH A 77 577 54 HOH HOH . C 3 HOH A 78 578 79 HOH HOH . C 3 HOH A 79 579 32 HOH HOH . C 3 HOH A 80 580 97 HOH HOH . C 3 HOH A 81 581 39 HOH HOH . C 3 HOH A 82 582 126 HOH HOH . C 3 HOH A 83 583 106 HOH HOH . C 3 HOH A 84 584 18 HOH HOH . C 3 HOH A 85 585 52 HOH HOH . C 3 HOH A 86 586 95 HOH HOH . C 3 HOH A 87 587 82 HOH HOH . C 3 HOH A 88 588 92 HOH HOH . C 3 HOH A 89 589 57 HOH HOH . C 3 HOH A 90 590 93 HOH HOH . C 3 HOH A 91 591 123 HOH HOH . C 3 HOH A 92 592 108 HOH HOH . C 3 HOH A 93 593 75 HOH HOH . C 3 HOH A 94 594 103 HOH HOH . C 3 HOH A 95 595 96 HOH HOH . C 3 HOH A 96 596 33 HOH HOH . C 3 HOH A 97 597 66 HOH HOH . C 3 HOH A 98 598 65 HOH HOH . C 3 HOH A 99 599 64 HOH HOH . C 3 HOH A 100 600 29 HOH HOH . C 3 HOH A 101 601 99 HOH HOH . C 3 HOH A 102 602 129 HOH HOH . C 3 HOH A 103 603 100 HOH HOH . C 3 HOH A 104 604 114 HOH HOH . C 3 HOH A 105 605 101 HOH HOH . C 3 HOH A 106 606 16 HOH HOH . C 3 HOH A 107 607 118 HOH HOH . C 3 HOH A 108 608 89 HOH HOH . C 3 HOH A 109 609 61 HOH HOH . C 3 HOH A 110 610 62 HOH HOH . C 3 HOH A 111 611 128 HOH HOH . C 3 HOH A 112 612 74 HOH HOH . C 3 HOH A 113 613 43 HOH HOH . C 3 HOH A 114 614 117 HOH HOH . C 3 HOH A 115 615 136 HOH HOH . C 3 HOH A 116 616 112 HOH HOH . C 3 HOH A 117 617 76 HOH HOH . C 3 HOH A 118 618 132 HOH HOH . C 3 HOH A 119 619 113 HOH HOH . C 3 HOH A 120 620 78 HOH HOH . C 3 HOH A 121 621 83 HOH HOH . C 3 HOH A 122 622 125 HOH HOH . C 3 HOH A 123 623 119 HOH HOH . C 3 HOH A 124 624 86 HOH HOH . C 3 HOH A 125 625 68 HOH HOH . C 3 HOH A 126 626 115 HOH HOH . C 3 HOH A 127 627 111 HOH HOH . C 3 HOH A 128 628 121 HOH HOH . C 3 HOH A 129 629 72 HOH HOH . C 3 HOH A 130 630 59 HOH HOH . C 3 HOH A 131 631 133 HOH HOH . C 3 HOH A 132 632 56 HOH HOH . C 3 HOH A 133 633 127 HOH HOH . C 3 HOH A 134 634 55 HOH HOH . C 3 HOH A 135 635 67 HOH HOH . C 3 HOH A 136 636 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C22 3XI . . . B 2 -18.538 12.498 -18.399 1 47.07 ? C22 3XI 401 A 1 HETATM 2 O O25 3XI . . . B 2 -21.159 14.261 -22.016 1 53.61 ? O25 3XI 401 A 1 HETATM 3 C C21 3XI . . . B 2 -18.126 12.006 -19.782 1 51.85 ? C21 3XI 401 A 1 HETATM 4 C C20 3XI . . . B 2 -18.744 12.827 -20.917 1 50.8 ? C20 3XI 401 A 1 HETATM 5 C C19 3XI . . . B 2 -19.362 14.163 -20.493 1 50.3 ? C19 3XI 401 A 1 HETATM 6 C C24 3XI . . . B 2 -20.303 14.071 -19.289 1 49.19 ? C24 3XI 401 A 1 HETATM 7 C C23 3XI . . . B 2 -20.016 12.877 -18.384 1 46.56 ? C23 3XI 401 A 1 HETATM 8 C C18 3XI . . . B 2 -20.148 14.764 -21.655 1 49.79 ? C18 3XI 401 A 1 HETATM 9 N N17 3XI . . . B 2 -19.652 15.965 -22.302 1 43.07 ? N17 3XI 401 A 1 HETATM 10 C C13 3XI . . . B 2 -20.378 16.576 -23.397 1 35.3 ? C13 3XI 401 A 1 HETATM 11 C C12 3XI . . . B 2 -19.562 16.537 -24.681 1 30.32 ? C12 3XI 401 A 1 HETATM 12 O O26 3XI . . . B 2 -18.441 16.918 -24.678 1 37 ? O26 3XI 401 A 1 HETATM 13 C C14 3XI . . . B 2 -20.594 18.044 -23.052 1 35.11 ? C14 3XI 401 A 1 HETATM 14 C C15 3XI . . . B 2 -20.812 18.218 -21.553 1 48.41 ? C15 3XI 401 A 1 HETATM 15 C C16 3XI . . . B 2 -21.726 18.654 -23.873 1 37.19 ? C16 3XI 401 A 1 HETATM 16 N N11 3XI . . . B 2 -20.163 16.054 -25.907 1 20.84 ? N11 3XI 401 A 1 HETATM 17 C C06 3XI . . . B 2 -19.369 16.043 -27.118 1 25.33 ? C06 3XI 401 A 1 HETATM 18 C C05 3XI . . . B 2 -19.393 17.461 -27.682 1 24.93 ? C05 3XI 401 A 1 HETATM 19 O O27 3XI . . . B 2 -20.419 18.047 -27.764 1 28.31 ? O27 3XI 401 A 1 HETATM 20 C C07 3XI . . . B 2 -19.952 15.053 -28.124 1 28.39 ? C07 3XI 401 A 1 HETATM 21 C C08 3XI . . . B 2 -19.62 13.606 -27.76 1 45.46 ? C08 3XI 401 A 1 HETATM 22 C C10 3XI . . . B 2 -20.68 13.012 -26.835 1 52.91 ? C10 3XI 401 A 1 HETATM 23 C C09 3XI . . . B 2 -19.479 12.747 -29.013 1 53.23 ? C09 3XI 401 A 1 HETATM 24 C C31 3XI . . . B 2 -19.047 22.125 -25.616 1 29.27 ? C31 3XI 401 A 1 HETATM 25 C C03 3XI . . . B 2 -18.212 19.457 -28.622 1 21.14 ? C03 3XI 401 A 1 HETATM 26 C C30 3XI . . . B 2 -18.959 20.765 -26.107 1 29.71 ? C30 3XI 401 A 1 HETATM 27 C C34 3XI . . . B 2 -16.466 21.027 -25.452 1 26.97 ? C34 3XI 401 A 1 HETATM 28 C C28 3XI . . . B 2 -17.265 20.325 -27.796 1 19.87 ? C28 3XI 401 A 1 HETATM 29 C C02 3XI . . . B 2 -17.806 19.479 -30.094 1 16.89 ? C02 3XI 401 A 1 HETATM 30 C C29 3XI . . . B 2 -17.62 20.277 -26.258 1 25.66 ? C29 3XI 401 A 1 HETATM 31 C C32 3XI . . . B 2 -18.382 22.245 -24.298 1 23.34 ? C32 3XI 401 A 1 HETATM 32 N N04 3XI . . . B 2 -18.163 18.103 -28.104 1 18.14 ? N04 3XI 401 A 1 HETATM 33 N N33 3XI . . . B 2 -16.877 22.069 -24.411 1 18.2 ? N33 3XI 401 A 1 HETATM 34 O O01 3XI . . . B 2 -17.8 20.503 -30.693 1 28.34 ? O01 3XI 401 A 1 HETATM 35 O O35 3XI . . . B 2 -15.325 20.779 -25.649 1 24.77 ? O35 3XI 401 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #