data_7WOJ # _model_server_result.job_id pZYV76n3LFQCBC9pMTHXRQ _model_server_result.datetime_utc '2024-10-13 20:27:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7woj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 7WOJ # _exptl.entry_id 7WOJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.045 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Cisplatin _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.41 _cell.angle_gamma 90 _cell.entry_id 7WOJ _cell.length_a 169.91 _cell.length_b 36.69 _cell.length_c 90.01 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WOJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 77 A CYS 53 1_555 A SG CYS 86 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 99 A CYS 75 1_555 A SG CYS 115 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf3 A SG CYS 114 A CYS 90 1_555 A SG CYS 125 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 A SG CYS 148 A CYS 124 1_555 A SG CYS 193 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? disulf ? disulf5 A SG CYS 192 A CYS 168 1_555 A SG CYS 201 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 A SG CYS 224 A CYS 200 1_555 A SG CYS 270 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? disulf ? disulf7 A SG CYS 269 A CYS 245 1_555 A SG CYS 277 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf8 A SG CYS 289 A CYS 265 1_555 A SG CYS 303 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 A SG CYS 302 A CYS 278 1_555 A SG CYS 313 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 A SG CYS 340 A CYS 316 1_555 A SG CYS 385 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf11 A SG CYS 384 A CYS 360 1_555 A SG CYS 393 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf12 A SG CYS 416 A CYS 392 1_555 A SG CYS 462 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf13 A SG CYS 461 A CYS 437 1_555 A SG CYS 472 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf14 A SG CYS 485 A CYS 461 1_555 A SG CYS 501 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf15 A SG CYS 500 A CYS 476 1_555 A SG CYS 511 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf16 A SG CYS 582 A CYS 558 1_555 A SG CYS 591 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc1 A ND1 HIS 129 A HIS 105 1_555 J PT1 CPT . A CPT 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.817 ? metalc ? metalc2 A ND1 HIS 152 A HIS 128 1_555 E PT1 CPT . A CPT 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc3 A NE2 HIS 170 A HIS 146 1_555 G PT1 CPT . A CPT 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc4 A ND1 HIS 271 A HIS 247 1_555 H PT1 CPT . A CPT 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc5 A SD MET 322 A MET 298 1_555 I PT1 CPT . A CPT 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc6 A SD MET 353 A MET 329 1_555 C PT1 CPT . A CPT 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc7 A NE2 HIS 362 A HIS 338 1_555 B PT1 CPT . A CPT 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.843 ? metalc ? metalc8 A NZ LYS 460 A LYS 436 1_555 F PT1 CPT . A CPT 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc9 A NE2 HIS 464 A HIS 440 1_555 F PT1 CPT . A CPT 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc10 A SD MET 572 A MET 548 1_555 D PT1 CPT . A CPT 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? # _chem_comp.formula 'Cl2 H6 N2 Pt' _chem_comp.formula_weight 300.045 _chem_comp.id CPT _chem_comp.mon_nstd_flag . _chem_comp.name Cisplatin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms diammine(dichloro)platinum # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PT1 N1 CPT sing 70 n n PT1 N2 CPT sing 71 n n N1 H11 CPT sing 72 n n N1 H12 CPT sing 73 n n N1 H13 CPT sing 74 n n N2 H21 CPT sing 75 n n N2 H22 CPT sing 76 n n N2 H23 CPT sing 77 n n CL2 PT1 CPT sing 78 n n CL1 PT1 CPT sing 79 n n # _atom_sites.entry_id 7WOJ _atom_sites.fract_transf_matrix[1][1] 0.005885 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001622 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027255 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011524 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CPT A 1 601 601 CPT CPT . C 2 CPT A 1 602 602 CPT CPT . D 2 CPT A 1 603 603 CPT CPT . E 2 CPT A 1 604 604 CPT CPT . F 2 CPT A 1 605 605 CPT CPT . G 2 CPT A 1 606 606 CPT CPT . H 2 CPT A 1 607 607 CPT CPT . I 2 CPT A 1 608 608 CPT CPT . J 2 CPT A 1 609 609 CPT CPT . K 3 MYR A 1 610 1001 MYR MYR . L 3 MYR A 1 611 1002 MYR MYR . M 3 MYR A 1 612 1004 MYR MYR . N 3 MYR A 1 613 1005 MYR MYR . O 3 MYR A 1 614 1006 MYR MYR . P 3 MYR A 1 615 1007 MYR MYR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 PT PT1 CPT . . . D 2 1.151 3.163 -32.877 0.65 101.33 ? PT1 CPT 603 A 1 HETATM 2 N N1 CPT . . . D 2 0.044 4.676 -33.687 0.65 58.92 ? N1 CPT 603 A 1 HETATM 3 N N2 CPT . . . D 2 2.741 4.471 -32.603 0.65 57.76 ? N2 CPT 603 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 3 #