data_7WOK # _model_server_result.job_id BWsytn-HrheUJ_oTuRnKww _model_server_result.datetime_utc '2024-10-13 18:18:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wok # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":603}' # _entry.id 7WOK # _exptl.entry_id 7WOK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.045 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Cisplatin _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.87 _cell.angle_gamma 90 _cell.entry_id 7WOK _cell.length_a 58.376 _cell.length_b 180.518 _cell.length_c 58.503 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WOK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,O 1 1 B,I,J,K,L,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 77 A CYS 53 1_555 A SG CYS 86 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 A SG CYS 99 A CYS 75 1_555 A SG CYS 115 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 A SG CYS 114 A CYS 90 1_555 A SG CYS 125 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? disulf ? disulf4 A SG CYS 148 A CYS 124 1_555 A SG CYS 193 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf5 A SG CYS 192 A CYS 168 1_555 A SG CYS 201 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf6 A SG CYS 224 A CYS 200 1_555 A SG CYS 270 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? disulf ? disulf7 A SG CYS 269 A CYS 245 1_555 A SG CYS 277 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf8 A SG CYS 289 A CYS 265 1_555 A SG CYS 303 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf9 A SG CYS 302 A CYS 278 1_555 A SG CYS 313 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf10 A SG CYS 340 A CYS 316 1_555 A SG CYS 385 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf11 A SG CYS 384 A CYS 360 1_555 A SG CYS 393 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf12 A SG CYS 416 A CYS 392 1_555 A SG CYS 462 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf13 A SG CYS 461 A CYS 437 1_555 A SG CYS 472 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? disulf ? disulf14 A SG CYS 485 A CYS 461 1_555 A SG CYS 501 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf15 A SG CYS 500 A CYS 476 1_555 A SG CYS 511 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf16 A SG CYS 538 A CYS 514 1_555 A SG CYS 583 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf17 A SG CYS 582 A CYS 558 1_555 A SG CYS 591 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf18 B SG CYS 77 B CYS 53 1_555 B SG CYS 86 B CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf19 B SG CYS 99 B CYS 75 1_555 B SG CYS 115 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf20 B SG CYS 114 B CYS 90 1_555 B SG CYS 125 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf21 B SG CYS 148 B CYS 124 1_555 B SG CYS 193 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf22 B SG CYS 192 B CYS 168 1_555 B SG CYS 201 B CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf23 B SG CYS 224 B CYS 200 1_555 B SG CYS 270 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? disulf ? disulf24 B SG CYS 269 B CYS 245 1_555 B SG CYS 277 B CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf25 B SG CYS 289 B CYS 265 1_555 B SG CYS 303 B CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf26 B SG CYS 302 B CYS 278 1_555 B SG CYS 313 B CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf27 B SG CYS 340 B CYS 316 1_555 B SG CYS 385 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf28 B SG CYS 384 B CYS 360 1_555 B SG CYS 393 B CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf29 B SG CYS 416 B CYS 392 1_555 B SG CYS 462 B CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf30 B SG CYS 461 B CYS 437 1_555 B SG CYS 472 B CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf31 B SG CYS 485 B CYS 461 1_555 B SG CYS 501 B CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf32 B SG CYS 500 B CYS 476 1_555 B SG CYS 511 B CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf33 B SG CYS 538 B CYS 514 1_555 B SG CYS 583 B CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? disulf ? disulf34 B SG CYS 582 B CYS 558 1_555 B SG CYS 591 B CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc1 A ND1 HIS 129 A HIS 105 1_555 E PT1 CPT . A CPT 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc2 A NE2 HIS 271 A HIS 247 1_555 G PT1 CPT . A CPT 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc3 A NE2 HIS 312 A HIS 288 1_555 F PT1 CPT . A CPT 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc4 A SD MET 322 A MET 298 1_555 C PT1 CPT . A CPT 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc5 A SD MET 353 A MET 329 1_555 D PT1 CPT . A CPT 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc6 A ND1 HIS 534 A HIS 510 1_555 C PT1 CPT . A CPT 601 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc7 B NE2 HIS 91 B HIS 67 1_555 M PT1 CPT . B CPT 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? metalc ? metalc8 B ND1 HIS 129 B HIS 105 1_555 K PT1 CPT . B CPT 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.878 ? metalc ? metalc9 B ND1 HIS 271 B HIS 247 1_555 M PT1 CPT . B CPT 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc10 B OD1 ASP 273 B ASP 249 1_555 M PT1 CPT . B CPT 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc11 B OD2 ASP 273 B ASP 249 1_555 M PT1 CPT . B CPT 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? metalc ? metalc12 B NE2 HIS 312 B HIS 288 1_555 L PT1 CPT . B CPT 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc13 B SD MET 322 B MET 298 1_555 I PT1 CPT . B CPT 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc14 B SD MET 353 B MET 329 1_555 J PT1 CPT . B CPT 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc15 B ND1 HIS 534 B HIS 510 1_555 I PT1 CPT . B CPT 601 1_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc16 M PT1 CPT . B CPT 605 1_555 P O HOH . B HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? # _chem_comp.formula 'Cl2 H6 N2 Pt' _chem_comp.formula_weight 300.045 _chem_comp.id CPT _chem_comp.mon_nstd_flag . _chem_comp.name Cisplatin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms diammine(dichloro)platinum # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PT1 N1 CPT sing 70 n n PT1 N2 CPT sing 71 n n N1 H11 CPT sing 72 n n N1 H12 CPT sing 73 n n N1 H13 CPT sing 74 n n N2 H21 CPT sing 75 n n N2 H22 CPT sing 76 n n N2 H23 CPT sing 77 n n CL2 PT1 CPT sing 78 n n CL1 PT1 CPT sing 79 n n # _atom_sites.entry_id 7WOK _atom_sites.fract_transf_matrix[1][1] 0.01713 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004229 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00554 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017606 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CPT A 1 601 601 CPT CPT . D 2 CPT A 1 602 602 CPT CPT . E 2 CPT A 1 603 603 CPT CPT . F 2 CPT A 1 604 604 CPT CPT . G 2 CPT A 1 605 605 CPT CPT . H 3 PO4 A 1 606 1 PO4 PO4 . I 2 CPT B 1 601 601 CPT CPT . J 2 CPT B 1 602 602 CPT CPT . K 2 CPT B 1 603 603 CPT CPT . L 2 CPT B 1 604 604 CPT CPT . M 2 CPT B 1 605 605 CPT CPT . N 3 PO4 B 1 606 2 PO4 PO4 . O 4 HOH A 1 701 14 HOH HOH . O 4 HOH A 2 702 16 HOH HOH . O 4 HOH A 3 703 2 HOH HOH . O 4 HOH A 4 704 6 HOH HOH . O 4 HOH A 5 705 4 HOH HOH . O 4 HOH A 6 706 5 HOH HOH . O 4 HOH A 7 707 1 HOH HOH . O 4 HOH A 8 708 3 HOH HOH . P 4 HOH B 1 701 17 HOH HOH . P 4 HOH B 2 702 13 HOH HOH . P 4 HOH B 3 703 7 HOH HOH . P 4 HOH B 4 704 8 HOH HOH . P 4 HOH B 5 705 15 HOH HOH . P 4 HOH B 6 706 9 HOH HOH . P 4 HOH B 7 707 11 HOH HOH . P 4 HOH B 8 708 10 HOH HOH . P 4 HOH B 9 709 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 PT PT1 CPT . . . E 2 12.397 51.678 6.475 0.59 143.52 ? PT1 CPT 603 A 1 HETATM 2 N N1 CPT . . . E 2 14.429 51.884 6.214 0.59 157.18 ? N1 CPT 603 A 1 HETATM 3 N N2 CPT . . . E 2 12.7 51.185 8.452 0.59 94.48 ? N2 CPT 603 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 3 #