data_7WOX # _model_server_result.job_id FRKBWR7vE2OPgnf4INOMew _model_server_result.datetime_utc '2024-11-12 20:41:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wox # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 7WOX # _exptl.entry_id 7WOX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 490.552 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[[5-(3-phenylprop-2-ynoylamino)-2-propoxy-phenyl]methyl]-4-pyrimidin-2-yl-benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.93 _cell.angle_gamma 90 _cell.entry_id 7WOX _cell.length_a 93.51 _cell.length_b 61.75 _cell.length_c 119.62 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WOX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 84 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 285 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C10 _struct_conn.ptnr2_label_comp_id 5YW _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 5YW _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.767 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C30 H26 N4 O3' _chem_comp.formula_weight 490.552 _chem_comp.id 5YW _chem_comp.mon_nstd_flag . _chem_comp.name N-[[5-(3-phenylprop-2-ynoylamino)-2-propoxy-phenyl]methyl]-4-pyrimidin-2-yl-benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 5YW sing 1 n n C2 C3 5YW sing 2 n n C3 O1 5YW sing 3 n n O1 C4 5YW sing 4 n n C19 C18 5YW sing 5 n n C19 N2 5YW sing 6 n n C4 C5 5YW doub 7 n y C4 C18 5YW sing 8 n y C5 C6 5YW sing 9 n y C18 C17 5YW doub 10 n y N2 C20 5YW sing 11 n n C6 C7 5YW doub 12 n y C17 C7 5YW sing 13 n y C7 N1 5YW sing 14 n n O2 C8 5YW doub 15 n n C20 O3 5YW doub 16 n n C20 C21 5YW sing 17 n n C22 C23 5YW doub 18 n y C22 C21 5YW sing 19 n y C23 C24 5YW sing 20 n y N1 C8 5YW sing 21 n n C21 C30 5YW doub 22 n y C8 C9 5YW sing 23 n n N3 C26 5YW doub 24 n y N3 C25 5YW sing 25 n y C30 C29 5YW sing 26 n y C24 C25 5YW sing 27 n n C24 C29 5YW doub 28 n y C26 C27 5YW sing 29 n y C25 N4 5YW doub 30 n y C9 C10 5YW trip 31 n n C27 C28 5YW doub 32 n y N4 C28 5YW sing 33 n y C10 C11 5YW sing 34 n n C11 C16 5YW doub 35 n y C11 C12 5YW sing 36 n y C16 C15 5YW sing 37 n y C12 C13 5YW doub 38 n y C15 C14 5YW doub 39 n y C13 C14 5YW sing 40 n y C1 H1 5YW sing 41 n n C1 H2 5YW sing 42 n n C1 H3 5YW sing 43 n n C2 H4 5YW sing 44 n n C2 H5 5YW sing 45 n n C3 H6 5YW sing 46 n n C3 H7 5YW sing 47 n n C5 H8 5YW sing 48 n n C6 H9 5YW sing 49 n n N1 H10 5YW sing 50 n n C12 H13 5YW sing 51 n n C13 H14 5YW sing 52 n n C14 H15 5YW sing 53 n n C15 H16 5YW sing 54 n n C16 H17 5YW sing 55 n n C17 H18 5YW sing 56 n n C19 H19 5YW sing 57 n n C19 H20 5YW sing 58 n n N2 H21 5YW sing 59 n n C22 H22 5YW sing 60 n n C23 H23 5YW sing 61 n n C26 H24 5YW sing 62 n n C27 H25 5YW sing 63 n n C28 H26 5YW sing 64 n n C29 H27 5YW sing 65 n n C30 H28 5YW sing 66 n n # _atom_sites.entry_id 7WOX _atom_sites.fract_transf_matrix[1][1] 0.010694 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002259 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016194 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008544 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 5YW A 1 501 2 5YW C60 . D 3 HOH A 1 601 7 HOH HOH . D 3 HOH A 2 602 11 HOH HOH . D 3 HOH A 3 603 3 HOH HOH . D 3 HOH A 4 604 10 HOH HOH . D 3 HOH A 5 605 4 HOH HOH . D 3 HOH A 6 606 5 HOH HOH . E 3 HOH B 1 501 6 HOH HOH . E 3 HOH B 2 502 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 5YW . . . C 2 17.124 25.803 4.55 1 38.09 ? C1 5YW 501 A 1 HETATM 2 C C2 5YW . . . C 2 18.099 26.031 5.733 1 39.27 ? C2 5YW 501 A 1 HETATM 3 C C3 5YW . . . C 2 18.159 24.755 6.539 1 40.44 ? C3 5YW 501 A 1 HETATM 4 O O1 5YW . . . C 2 16.811 24.355 6.889 1 40.44 ? O1 5YW 501 A 1 HETATM 5 C C4 5YW . . . C 2 16.675 23.22 7.651 1 38.4 ? C4 5YW 501 A 1 HETATM 6 C C5 5YW . . . C 2 17.763 22.432 8.012 1 37.29 ? C5 5YW 501 A 1 HETATM 7 C C6 5YW . . . C 2 17.556 21.304 8.774 1 37.25 ? C6 5YW 501 A 1 HETATM 8 C C7 5YW . . . C 2 16.264 20.941 9.182 1 40.41 ? C7 5YW 501 A 1 HETATM 9 N N1 5YW . . . C 2 16.255 19.715 9.921 1 40.44 ? N1 5YW 501 A 1 HETATM 10 C C8 5YW . . . C 2 17.363 18.9 9.992 1 40.44 ? C8 5YW 501 A 1 HETATM 11 O O2 5YW . . . C 2 18.403 19.12 9.317 1 38.58 ? O2 5YW 501 A 1 HETATM 12 C C9 5YW . . . C 2 17.383 17.874 11.065 1 40.44 ? C9 5YW 501 A 1 HETATM 13 C C10 5YW . . . C 2 18.333 18.04 12.101 1 40.44 ? C10 5YW 501 A 1 HETATM 14 C C11 5YW . . . C 2 18.285 17.093 13.209 1 40.18 ? C11 5YW 501 A 1 HETATM 15 C C12 5YW . . . C 2 19.444 16.56 13.801 1 39.21 ? C12 5YW 501 A 1 HETATM 16 C C13 5YW . . . C 2 19.342 15.659 14.849 1 39.67 ? C13 5YW 501 A 1 HETATM 17 C C14 5YW . . . C 2 18.078 15.265 15.293 1 38.86 ? C14 5YW 501 A 1 HETATM 18 C C15 5YW . . . C 2 16.919 15.771 14.697 1 39.3 ? C15 5YW 501 A 1 HETATM 19 C C16 5YW . . . C 2 17.023 16.684 13.657 1 38.7 ? C16 5YW 501 A 1 HETATM 20 C C17 5YW . . . C 2 15.168 21.729 8.794 1 39.84 ? C17 5YW 501 A 1 HETATM 21 C C18 5YW . . . C 2 15.367 22.883 8.023 1 38.85 ? C18 5YW 501 A 1 HETATM 22 C C19 5YW . . . C 2 14.211 23.753 7.606 1 40.37 ? C19 5YW 501 A 1 HETATM 23 N N2 5YW . . . C 2 13.487 24.304 8.765 1 40.44 ? N2 5YW 501 A 1 HETATM 24 C C20 5YW . . . C 2 13.944 25.341 9.503 1 40.38 ? C20 5YW 501 A 1 HETATM 25 O O3 5YW . . . C 2 15.173 25.513 9.739 1 40.44 ? O3 5YW 501 A 1 HETATM 26 C C21 5YW . . . C 2 12.888 26.354 9.927 1 39.79 ? C21 5YW 501 A 1 HETATM 27 C C22 5YW . . . C 2 11.538 26.154 9.556 1 39.99 ? C22 5YW 501 A 1 HETATM 28 C C23 5YW . . . C 2 10.551 27.089 9.92 1 39.08 ? C23 5YW 501 A 1 HETATM 29 C C24 5YW . . . C 2 10.901 28.237 10.659 1 39.38 ? C24 5YW 501 A 1 HETATM 30 C C25 5YW . . . C 2 9.86 29.25 11 1 38.43 ? C25 5YW 501 A 1 HETATM 31 N N3 5YW . . . C 2 8.581 28.954 10.629 1 39.69 ? N3 5YW 501 A 1 HETATM 32 C C26 5YW . . . C 2 7.659 29.908 10.915 1 37.9 ? C26 5YW 501 A 1 HETATM 33 C C27 5YW . . . C 2 7.994 31.138 11.541 1 39.58 ? C27 5YW 501 A 1 HETATM 34 C C28 5YW . . . C 2 9.348 31.345 11.866 1 40.27 ? C28 5YW 501 A 1 HETATM 35 N N4 5YW . . . C 2 10.299 30.418 11.586 1 39.09 ? N4 5YW 501 A 1 HETATM 36 C C29 5YW . . . C 2 12.252 28.465 11.008 1 39.96 ? C29 5YW 501 A 1 HETATM 37 C C30 5YW . . . C 2 13.237 27.53 10.638 1 39.59 ? C30 5YW 501 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #