data_7WP3
#
_model_server_result.job_id            LZs56FBEqJm1gftFwJwGeg 
_model_server_result.datetime_utc      '2024-11-27 02:26:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7wp3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":301}' 
#
_entry.id    7WP3 
#
_exptl.entry_id    7WP3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              340.419 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,5-BIS(4-AMIDINOPHENOXY)PENTANE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7WP3 
_cell.length_a            135.024 
_cell.length_b            150.664 
_cell.length_c            170.547 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7WP3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,G,I,L,M 1 1 
B,C,F,H,J,K,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C19 H24 N4 O2' 
_chem_comp.formula_weight    340.419 
_chem_comp.id                PNT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,5-BIS(4-AMIDINOPHENOXY)PENTANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PNT doub 260 n y 
C1 C6 PNT sing 261 n y 
C1 O1 PNT sing 262 n n 
C2 C3 PNT sing 263 n y 
C2 H2 PNT sing 264 n n 
C3 C4 PNT doub 265 n y 
C3 H3 PNT sing 266 n n 
C4 C5 PNT sing 267 n y 
C4 C9 PNT sing 268 n n 
C5 C6 PNT doub 269 n y 
C5 H5 PNT sing 270 n n 
C6 H6 PNT sing 271 n n 
C7 C8 PNT sing 272 n n 
C7 O1 PNT sing 273 n n 
C7 H71 PNT sing 274 n n 
C7 H72 PNT sing 275 n n 
C8 C10 PNT sing 276 n n 
C8 H81 PNT sing 277 n n 
C8 H82 PNT sing 278 n n 
C9 N1 PNT doub 279 n n 
C9 N2 PNT sing 280 n n 
C10 C8' PNT sing 281 n n 
C10 H101 PNT sing 282 n n 
C10 H102 PNT sing 283 n n 
C1' C2' PNT doub 284 n y 
C1' C6' PNT sing 285 n y 
C1' O1' PNT sing 286 n n 
C2' C3' PNT sing 287 n y 
C2' H2' PNT sing 288 n n 
C3' C4' PNT doub 289 n y 
C3' H3' PNT sing 290 n n 
C4' C5' PNT sing 291 n y 
C4' C9' PNT sing 292 n n 
C5' C6' PNT doub 293 n y 
C5' H5' PNT sing 294 n n 
C6' H6' PNT sing 295 n n 
C7' C8' PNT sing 296 n n 
C7' O1' PNT sing 297 n n 
C7' "H7'1" PNT sing 298 n n 
C7' "H7'2" PNT sing 299 n n 
C8' "H8'1" PNT sing 300 n n 
C8' "H8'2" PNT sing 301 n n 
C9' N1' PNT doub 302 n n 
C9' N2' PNT sing 303 n n 
N1 HN1 PNT sing 304 n n 
N2 HN2 PNT sing 305 n n 
N2 HN3 PNT sing 306 n n 
N1' "HN'1" PNT sing 307 n n 
N2' "HN'2" PNT sing 308 n n 
N2' "HN'3" PNT sing 309 n n 
#
_atom_sites.entry_id                     7WP3 
_atom_sites.fract_transf_matrix[1][1]    0.007406 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006637 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005863 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 PNT A 1 301 305 PNT PNT . 
H 2 PNT C 1 301 302 PNT PNT . 
I 3 HOH A 1 401 12 HOH HOH . 
I 3 HOH A 2 402 10 HOH HOH . 
I 3 HOH A 3 403 86 HOH HOH . 
I 3 HOH A 4 404 22 HOH HOH . 
I 3 HOH A 5 405 15 HOH HOH . 
I 3 HOH A 6 406 302 HOH HOH . 
I 3 HOH A 7 407 21 HOH HOH . 
I 3 HOH A 8 408 4 HOH HOH . 
I 3 HOH A 9 409 304 HOH HOH . 
I 3 HOH A 10 410 23 HOH HOH . 
I 3 HOH A 11 411 19 HOH HOH . 
I 3 HOH A 12 412 11 HOH HOH . 
I 3 HOH A 13 413 16 HOH HOH . 
I 3 HOH A 14 414 5 HOH HOH . 
I 3 HOH A 15 415 9 HOH HOH . 
I 3 HOH A 16 416 2 HOH HOH . 
J 3 HOH B 1 301 33 HOH HOH . 
J 3 HOH B 2 302 54 HOH HOH . 
J 3 HOH B 3 303 53 HOH HOH . 
J 3 HOH B 4 304 77 HOH HOH . 
J 3 HOH B 5 305 25 HOH HOH . 
J 3 HOH B 6 306 46 HOH HOH . 
J 3 HOH B 7 307 26 HOH HOH . 
J 3 HOH B 8 308 27 HOH HOH . 
J 3 HOH B 9 309 28 HOH HOH . 
J 3 HOH B 10 310 301 HOH HOH . 
J 3 HOH B 11 311 34 HOH HOH . 
J 3 HOH B 12 312 38 HOH HOH . 
J 3 HOH B 13 313 40 HOH HOH . 
J 3 HOH B 14 314 89 HOH HOH . 
J 3 HOH B 15 315 83 HOH HOH . 
J 3 HOH B 16 316 39 HOH HOH . 
J 3 HOH B 17 317 29 HOH HOH . 
J 3 HOH B 18 318 88 HOH HOH . 
J 3 HOH B 19 319 43 HOH HOH . 
K 3 HOH C 1 401 301 HOH HOH . 
K 3 HOH C 2 402 42 HOH HOH . 
K 3 HOH C 3 403 49 HOH HOH . 
K 3 HOH C 4 404 52 HOH HOH . 
K 3 HOH C 5 405 55 HOH HOH . 
K 3 HOH C 6 406 48 HOH HOH . 
K 3 HOH C 7 407 51 HOH HOH . 
L 3 HOH D 1 301 61 HOH HOH . 
L 3 HOH D 2 302 63 HOH HOH . 
L 3 HOH D 3 303 58 HOH HOH . 
L 3 HOH D 4 304 85 HOH HOH . 
L 3 HOH D 5 305 50 HOH HOH . 
L 3 HOH D 6 306 65 HOH HOH . 
L 3 HOH D 7 307 67 HOH HOH . 
L 3 HOH D 8 308 66 HOH HOH . 
L 3 HOH D 9 309 62 HOH HOH . 
L 3 HOH D 10 310 59 HOH HOH . 
L 3 HOH D 11 311 57 HOH HOH . 
M 3 HOH E 1 301 80 HOH HOH . 
M 3 HOH E 2 302 70 HOH HOH . 
M 3 HOH E 3 303 69 HOH HOH . 
M 3 HOH E 4 304 71 HOH HOH . 
M 3 HOH E 5 305 72 HOH HOH . 
N 3 HOH F 1 301 301 HOH HOH . 
N 3 HOH F 2 302 302 HOH HOH . 
N 3 HOH F 3 303 74 HOH HOH . 
N 3 HOH F 4 304 75 HOH HOH . 
N 3 HOH F 5 305 78 HOH HOH . 
N 3 HOH F 6 306 304 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PNT . . . H 2 1.949 1.03 49.776 1 158.46 0 C1 PNT 301 C 1 
HETATM 2 C C2 PNT . . . H 2 2.979 0.835 50.687 1 159.68 0 C2 PNT 301 C 1 
HETATM 3 C C3 PNT . . . H 2 3.504 -0.428 50.865 1 156.7 0 C3 PNT 301 C 1 
HETATM 4 C C4 PNT . . . H 2 3.015 -1.512 50.143 1 161.8 0 C4 PNT 301 C 1 
HETATM 5 C C5 PNT . . . H 2 1.983 -1.3 49.232 1 160.81 0 C5 PNT 301 C 1 
HETATM 6 C C6 PNT . . . H 2 1.448 -0.039 49.046 1 158.44 0 C6 PNT 301 C 1 
HETATM 7 C C7 PNT . . . H 2 2.362 3.331 49.22 1 125.22 0 C7 PNT 301 C 1 
HETATM 8 C C8 PNT . . . H 2 1.848 4.617 49.806 1 120.06 0 C8 PNT 301 C 1 
HETATM 9 C C9 PNT . . . H 2 3.585 -2.867 50.352 1 156.5 0 C9 PNT 301 C 1 
HETATM 10 C C10 PNT . . . H 2 0.625 5.158 49.093 1 124.92 0 C10 PNT 301 C 1 
HETATM 11 C C1' PNT . . . H 2 -1.329 6.818 47.049 1 144.42 0 C1' PNT 301 C 1 
HETATM 12 C C2' PNT . . . H 2 -0.266 7.71 47.118 1 129.98 0 C2' PNT 301 C 1 
HETATM 13 C C3' PNT . . . H 2 0.036 8.486 46.017 1 140.57 0 C3' PNT 301 C 1 
HETATM 14 C C4' PNT . . . H 2 -0.724 8.4 44.853 1 144.48 0 C4' PNT 301 C 1 
HETATM 15 C C5' PNT . . . H 2 -1.782 7.499 44.798 1 143.91 0 C5' PNT 301 C 1 
HETATM 16 C C6' PNT . . . H 2 -2.094 6.714 45.89 1 145 0 C6' PNT 301 C 1 
HETATM 17 C C7' PNT . . . H 2 -1.626 4.627 48.009 1 136.1 0 C7' PNT 301 C 1 
HETATM 18 C C8' PNT . . . H 2 -0.377 4.092 48.66 1 133.21 0 C8' PNT 301 C 1 
HETATM 19 C C9' PNT . . . H 2 -0.373 9.208 43.663 1 132.33 0 C9' PNT 301 C 1 
HETATM 20 O O1 PNT . . . H 2 1.452 2.292 49.607 1 140.66 0 O1 PNT 301 C 1 
HETATM 21 O O1' PNT . . . H 2 -1.629 6.054 48.144 1 141.12 0 O1' PNT 301 C 1 
HETATM 22 N N1 PNT . . . H 2 3.694 -3.732 49.392 1 137.19 0 N1 PNT 301 C 1 
HETATM 23 N N2 PNT . . . H 2 3.998 -3.174 51.601 1 150.8 0 N2 PNT 301 C 1 
HETATM 24 N N1' PNT . . . H 2 -0.387 10.515 43.663 1 95.74 0 N1' PNT 301 C 1 
HETATM 25 N N2' PNT . . . H 2 0.004 8.492 42.579 1 123.52 0 N2' PNT 301 C 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           346 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           25 
#