data_7WPH # _model_server_result.job_id Arnwy2LPLT5QuqVpoxq1_A _model_server_result.datetime_utc '2024-11-21 09:14:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wph # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":601}' # _entry.id 7WPH # _exptl.entry_id 7WPH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WPH _cell.length_a 50.17 _cell.length_b 266.35 _cell.length_c 112.61 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WPH _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G,I,K,L 1 1 B,E,F,H,J,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 21 A CYS 336 1_555 A SG CYS 46 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf2 A SG CYS 64 A CYS 379 1_555 A SG CYS 117 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf3 A SG CYS 76 A CYS 391 1_555 A SG CYS 210 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf4 A SG CYS 165 A CYS 480 1_555 A SG CYS 173 A CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf5 B SG CYS 21 B CYS 336 1_555 B SG CYS 46 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 B SG CYS 64 B CYS 379 1_555 B SG CYS 117 B CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf7 B SG CYS 76 B CYS 391 1_555 B SG CYS 210 B CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf8 B SG CYS 165 B CYS 480 1_555 B SG CYS 173 B CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf9 C SG CYS 22 D CYS 22 1_555 C SG CYS 90 D CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf10 C SG CYS 137 D CYS 137 1_555 C SG CYS 196 D CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf11 D SG CYS 22 E CYS 22 1_555 D SG CYS 96 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf12 D SG CYS 148 E CYS 148 1_555 D SG CYS 204 E CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf13 E SG CYS 22 H CYS 22 1_555 E SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf14 E SG CYS 148 H CYS 148 1_555 E SG CYS 204 H CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf15 F SG CYS 22 L CYS 22 1_555 F SG CYS 90 L CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf16 F SG CYS 137 L CYS 137 1_555 F SG CYS 196 L CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? covale ? covale1 A ND2 ASN 28 A ASN 343 1_555 G C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 B ND2 ASN 28 B ASN 343 1_555 H C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7WPH _atom_sites.fract_transf_matrix[1][1] 0.019932 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003754 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00888 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAG A 1 601 1307 NAG NAG . H 4 NAG B 1 601 1307 NAG NAG . I 5 HOH A 1 701 60 HOH HOH . I 5 HOH A 2 702 122 HOH HOH . I 5 HOH A 3 703 174 HOH HOH . I 5 HOH A 4 704 2 HOH HOH . I 5 HOH A 5 705 168 HOH HOH . I 5 HOH A 6 706 12 HOH HOH . I 5 HOH A 7 707 67 HOH HOH . I 5 HOH A 8 708 25 HOH HOH . I 5 HOH A 9 709 127 HOH HOH . I 5 HOH A 10 710 153 HOH HOH . I 5 HOH A 11 711 95 HOH HOH . I 5 HOH A 12 712 26 HOH HOH . I 5 HOH A 13 713 36 HOH HOH . I 5 HOH A 14 714 105 HOH HOH . I 5 HOH A 15 715 38 HOH HOH . I 5 HOH A 16 716 23 HOH HOH . I 5 HOH A 17 717 51 HOH HOH . I 5 HOH A 18 718 146 HOH HOH . I 5 HOH A 19 719 17 HOH HOH . I 5 HOH A 20 720 64 HOH HOH . I 5 HOH A 21 721 14 HOH HOH . I 5 HOH A 22 722 86 HOH HOH . I 5 HOH A 23 723 161 HOH HOH . I 5 HOH A 24 724 32 HOH HOH . I 5 HOH A 25 725 108 HOH HOH . I 5 HOH A 26 726 190 HOH HOH . I 5 HOH A 27 727 132 HOH HOH . I 5 HOH A 28 728 162 HOH HOH . I 5 HOH A 29 729 11 HOH HOH . I 5 HOH A 30 730 93 HOH HOH . I 5 HOH A 31 731 57 HOH HOH . I 5 HOH A 32 732 90 HOH HOH . I 5 HOH A 33 733 177 HOH HOH . J 5 HOH B 1 701 68 HOH HOH . J 5 HOH B 2 702 20 HOH HOH . J 5 HOH B 3 703 148 HOH HOH . J 5 HOH B 4 704 53 HOH HOH . J 5 HOH B 5 705 139 HOH HOH . J 5 HOH B 6 706 124 HOH HOH . J 5 HOH B 7 707 30 HOH HOH . J 5 HOH B 8 708 169 HOH HOH . J 5 HOH B 9 709 40 HOH HOH . J 5 HOH B 10 710 43 HOH HOH . J 5 HOH B 11 711 184 HOH HOH . J 5 HOH B 12 712 100 HOH HOH . J 5 HOH B 13 713 45 HOH HOH . J 5 HOH B 14 714 76 HOH HOH . J 5 HOH B 15 715 149 HOH HOH . J 5 HOH B 16 716 35 HOH HOH . K 5 HOH D 1 301 75 HOH HOH . K 5 HOH D 2 302 101 HOH HOH . K 5 HOH D 3 303 5 HOH HOH . K 5 HOH D 4 304 106 HOH HOH . K 5 HOH D 5 305 29 HOH HOH . K 5 HOH D 6 306 150 HOH HOH . K 5 HOH D 7 307 167 HOH HOH . K 5 HOH D 8 308 114 HOH HOH . K 5 HOH D 9 309 78 HOH HOH . K 5 HOH D 10 310 37 HOH HOH . K 5 HOH D 11 311 55 HOH HOH . K 5 HOH D 12 312 187 HOH HOH . K 5 HOH D 13 313 186 HOH HOH . K 5 HOH D 14 314 31 HOH HOH . K 5 HOH D 15 315 159 HOH HOH . K 5 HOH D 16 316 181 HOH HOH . L 5 HOH E 1 301 3 HOH HOH . L 5 HOH E 2 302 1 HOH HOH . L 5 HOH E 3 303 56 HOH HOH . L 5 HOH E 4 304 59 HOH HOH . L 5 HOH E 5 305 69 HOH HOH . L 5 HOH E 6 306 120 HOH HOH . L 5 HOH E 7 307 58 HOH HOH . L 5 HOH E 8 308 117 HOH HOH . M 5 HOH H 1 301 19 HOH HOH . M 5 HOH H 2 302 63 HOH HOH . M 5 HOH H 3 303 77 HOH HOH . M 5 HOH H 4 304 170 HOH HOH . M 5 HOH H 5 305 163 HOH HOH . M 5 HOH H 6 306 107 HOH HOH . M 5 HOH H 7 307 126 HOH HOH . N 5 HOH L 1 301 140 HOH HOH . N 5 HOH L 2 302 92 HOH HOH . N 5 HOH L 3 303 160 HOH HOH . N 5 HOH L 4 304 189 HOH HOH . N 5 HOH L 5 305 131 HOH HOH . N 5 HOH L 6 306 137 HOH HOH . N 5 HOH L 7 307 188 HOH HOH . N 5 HOH L 8 308 82 HOH HOH . N 5 HOH L 9 309 130 HOH HOH . N 5 HOH L 10 310 96 HOH HOH . N 5 HOH L 11 311 145 HOH HOH . N 5 HOH L 12 312 165 HOH HOH . N 5 HOH L 13 313 115 HOH HOH . N 5 HOH L 14 314 13 HOH HOH . N 5 HOH L 15 315 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . H 4 27.481 17.048 22.538 1 98.81 ? C1 NAG 601 B 1 HETATM 2 C C2 NAG . . . H 4 28.225 15.983 23.349 1 100.22 ? C2 NAG 601 B 1 HETATM 3 C C3 NAG . . . H 4 27.251 15.215 24.248 1 102 ? C3 NAG 601 B 1 HETATM 4 C C4 NAG . . . H 4 26.369 16.167 25.056 1 105.85 ? C4 NAG 601 B 1 HETATM 5 C C5 NAG . . . H 4 25.627 17.147 24.149 1 105.52 ? C5 NAG 601 B 1 HETATM 6 C C6 NAG . . . H 4 24.87 18.213 24.933 1 107.82 ? C6 NAG 601 B 1 HETATM 7 C C7 NAG . . . H 4 30.191 14.846 22.385 1 92.65 ? C7 NAG 601 B 1 HETATM 8 C C8 NAG . . . H 4 30.688 14.006 21.247 1 86.22 ? C8 NAG 601 B 1 HETATM 9 N N2 NAG . . . H 4 28.871 15.082 22.406 1 96.19 ? N2 NAG 601 B 1 HETATM 10 O O3 NAG . . . H 4 27.983 14.381 25.147 1 102.73 ? O3 NAG 601 B 1 HETATM 11 O O4 NAG . . . H 4 25.447 15.438 25.866 1 92.38 ? O4 NAG 601 B 1 HETATM 12 O O5 NAG . . . H 4 26.586 17.841 23.331 1 107.59 ? O5 NAG 601 B 1 HETATM 13 O O6 NAG . . . H 4 24.484 19.345 24.144 1 99.51 ? O6 NAG 601 B 1 HETATM 14 O O7 NAG . . . H 4 30.949 15.297 23.241 1 88.08 ? O7 NAG 601 B 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #