data_7WPL # _model_server_result.job_id zhXUpC51O-up4nH7DSXt7Q _model_server_result.datetime_utc '2024-11-30 23:33:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wpl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 7WPL # _exptl.entry_id 7WPL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WPL _cell.length_a 59.657 _cell.length_b 69.251 _cell.length_c 118.033 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WPL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7WPL _atom_sites.fract_transf_matrix[1][1] 0.016762 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01444 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008472 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 601 1 ATP ATP . C 3 EDO A 1 602 1 EDO EDO . D 3 EDO A 1 603 2 EDO EDO . E 4 HOH A 1 701 12 HOH HOH . E 4 HOH A 2 702 19 HOH HOH . E 4 HOH A 3 703 34 HOH HOH . E 4 HOH A 4 704 20 HOH HOH . E 4 HOH A 5 705 18 HOH HOH . E 4 HOH A 6 706 29 HOH HOH . E 4 HOH A 7 707 25 HOH HOH . E 4 HOH A 8 708 16 HOH HOH . E 4 HOH A 9 709 17 HOH HOH . E 4 HOH A 10 710 27 HOH HOH . E 4 HOH A 11 711 22 HOH HOH . E 4 HOH A 12 712 33 HOH HOH . E 4 HOH A 13 713 9 HOH HOH . E 4 HOH A 14 714 6 HOH HOH . E 4 HOH A 15 715 14 HOH HOH . E 4 HOH A 16 716 11 HOH HOH . E 4 HOH A 17 717 5 HOH HOH . E 4 HOH A 18 718 32 HOH HOH . E 4 HOH A 19 719 10 HOH HOH . E 4 HOH A 20 720 30 HOH HOH . E 4 HOH A 21 721 7 HOH HOH . E 4 HOH A 22 722 31 HOH HOH . E 4 HOH A 23 723 15 HOH HOH . E 4 HOH A 24 724 2 HOH HOH . E 4 HOH A 25 725 21 HOH HOH . E 4 HOH A 26 726 8 HOH HOH . E 4 HOH A 27 727 13 HOH HOH . E 4 HOH A 28 728 4 HOH HOH . E 4 HOH A 29 729 23 HOH HOH . E 4 HOH A 30 730 24 HOH HOH . E 4 HOH A 31 731 26 HOH HOH . E 4 HOH A 32 732 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 30.189 -1.24 25.493 1 29.68 ? PG ATP 601 A 1 HETATM 2 O O1G ATP . . . B 2 30.039 -0.395 26.587 1 29.69 ? O1G ATP 601 A 1 HETATM 3 O O2G ATP . . . B 2 30.569 -2.559 25.659 1 29.76 ? O2G ATP 601 A 1 HETATM 4 O O3G ATP . . . B 2 30.962 -0.636 24.513 1 29.72 ? O3G ATP 601 A 1 HETATM 5 P PB ATP . . . B 2 27.314 -1.467 25.477 1 29.02 ? PB ATP 601 A 1 HETATM 6 O O1B ATP . . . B 2 26.676 -0.451 24.677 1 29.04 ? O1B ATP 601 A 1 HETATM 7 O O2B ATP . . . B 2 27.33 -1.386 26.93 1 29.05 ? O2B ATP 601 A 1 HETATM 8 O O3B ATP . . . B 2 28.782 -1.456 24.888 1 29.4 ? O3B ATP 601 A 1 HETATM 9 P PA ATP . . . B 2 26.169 -3.106 23.433 1 27.5 ? PA ATP 601 A 1 HETATM 10 O O1A ATP . . . B 2 27.055 -2.152 22.799 1 27.58 ? O1A ATP 601 A 1 HETATM 11 O O2A ATP . . . B 2 26.233 -4.445 22.975 1 27.55 ? O2A ATP 601 A 1 HETATM 12 O O3A ATP . . . B 2 26.505 -2.751 24.957 1 28.32 ? O3A ATP 601 A 1 HETATM 13 O O5' ATP . . . B 2 24.63 -2.908 23.075 1 26.31 ? O5' ATP 601 A 1 HETATM 14 C C5' ATP . . . B 2 24.052 -1.65 22.873 1 24.94 ? C5' ATP 601 A 1 HETATM 15 C C4' ATP . . . B 2 22.598 -1.786 23.103 1 23.98 ? C4' ATP 601 A 1 HETATM 16 O O4' ATP . . . B 2 22.468 -2.222 24.417 1 23.27 ? O4' ATP 601 A 1 HETATM 17 C C3' ATP . . . B 2 21.949 -0.437 23.063 1 23.38 ? C3' ATP 601 A 1 HETATM 18 O O3' ATP . . . B 2 21.531 -0.01 21.805 1 23.29 ? O3' ATP 601 A 1 HETATM 19 C C2' ATP . . . B 2 20.886 -0.686 24.051 1 22.99 ? C2' ATP 601 A 1 HETATM 20 O O2' ATP . . . B 2 19.968 -1.572 23.534 1 22.94 ? O2' ATP 601 A 1 HETATM 21 C C1' ATP . . . B 2 21.528 -1.513 25.113 1 22.68 ? C1' ATP 601 A 1 HETATM 22 N N9 ATP . . . B 2 22.227 -0.678 26.081 1 21.98 ? N9 ATP 601 A 1 HETATM 23 C C8 ATP . . . B 2 23.492 -0.727 26.378 1 21.69 ? C8 ATP 601 A 1 HETATM 24 N N7 ATP . . . B 2 23.807 0.155 27.26 1 21.44 ? N7 ATP 601 A 1 HETATM 25 C C5 ATP . . . B 2 22.735 0.801 27.575 1 21.31 ? C5 ATP 601 A 1 HETATM 26 C C6 ATP . . . B 2 22.325 1.888 28.468 1 21.14 ? C6 ATP 601 A 1 HETATM 27 N N6 ATP . . . B 2 23.152 2.506 29.262 1 21.03 ? N6 ATP 601 A 1 HETATM 28 N N1 ATP . . . B 2 21.05 2.23 28.435 1 21.08 ? N1 ATP 601 A 1 HETATM 29 C C2 ATP . . . B 2 20.173 1.662 27.662 1 21.08 ? C2 ATP 601 A 1 HETATM 30 N N3 ATP . . . B 2 20.476 0.718 26.86 1 21.22 ? N3 ATP 601 A 1 HETATM 31 C C4 ATP . . . B 2 21.692 0.246 26.782 1 21.49 ? C4 ATP 601 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 31 #