data_7WPM
#
_model_server_result.job_id            mhcRZvmZe6ElppBVQanxNg 
_model_server_result.datetime_utc      '2025-08-28 20:51:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7wpm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    7WPM 
#
_exptl.entry_id    7WPM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7WPM 
_cell.length_a            70.016 
_cell.length_b            73.627 
_cell.length_c            117.549 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7WPM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 90 n n 
PG O2G ATP sing 91 n n 
PG O3G ATP sing 92 n n 
PG O3B ATP sing 93 n n 
O2G HOG2 ATP sing 94 n n 
O3G HOG3 ATP sing 95 n n 
PB O1B ATP doub 96 n n 
PB O2B ATP sing 97 n n 
PB O3B ATP sing 98 n n 
PB O3A ATP sing 99 n n 
O2B HOB2 ATP sing 100 n n 
PA O1A ATP doub 101 n n 
PA O2A ATP sing 102 n n 
PA O3A ATP sing 103 n n 
PA O5' ATP sing 104 n n 
O2A HOA2 ATP sing 105 n n 
O5' C5' ATP sing 106 n n 
C5' C4' ATP sing 107 n n 
C5' "H5'1" ATP sing 108 n n 
C5' "H5'2" ATP sing 109 n n 
C4' O4' ATP sing 110 n n 
C4' C3' ATP sing 111 n n 
C4' H4' ATP sing 112 n n 
O4' C1' ATP sing 113 n n 
C3' O3' ATP sing 114 n n 
C3' C2' ATP sing 115 n n 
C3' H3' ATP sing 116 n n 
O3' HO3' ATP sing 117 n n 
C2' O2' ATP sing 118 n n 
C2' C1' ATP sing 119 n n 
C2' H2' ATP sing 120 n n 
O2' HO2' ATP sing 121 n n 
C1' N9 ATP sing 122 n n 
C1' H1' ATP sing 123 n n 
N9 C8 ATP sing 124 n y 
N9 C4 ATP sing 125 n y 
C8 N7 ATP doub 126 n y 
C8 H8 ATP sing 127 n n 
N7 C5 ATP sing 128 n y 
C5 C6 ATP sing 129 n y 
C5 C4 ATP doub 130 n y 
C6 N6 ATP sing 131 n n 
C6 N1 ATP doub 132 n y 
N6 HN61 ATP sing 133 n n 
N6 HN62 ATP sing 134 n n 
N1 C2 ATP sing 135 n y 
C2 N3 ATP doub 136 n y 
C2 H2 ATP sing 137 n n 
N3 C4 ATP sing 138 n y 
#
_atom_sites.entry_id                     7WPM 
_atom_sites.fract_transf_matrix[1][1]    0.014282 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013582 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008507 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ATP A 1 601 1 ATP ATP . 
C 3 2AQ A 1 602 1 2AQ 2AQ . 
D 4 EDO A 1 603 1 EDO EDO . 
E 5 HOH A 1 701 4 HOH HOH . 
E 5 HOH A 2 702 11 HOH HOH . 
E 5 HOH A 3 703 10 HOH HOH . 
E 5 HOH A 4 704 2 HOH HOH . 
E 5 HOH A 5 705 3 HOH HOH . 
E 5 HOH A 6 706 12 HOH HOH . 
E 5 HOH A 7 707 14 HOH HOH . 
E 5 HOH A 8 708 7 HOH HOH . 
E 5 HOH A 9 709 6 HOH HOH . 
E 5 HOH A 10 710 5 HOH HOH . 
E 5 HOH A 11 711 8 HOH HOH . 
E 5 HOH A 12 712 1 HOH HOH . 
E 5 HOH A 13 713 9 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . B 2 -2.124 -2.182 21.362 1 38.44 ? PG ATP 601 A 1 
HETATM 2 O O1G ATP . . . B 2 -1.473 -2.8 20.166 1 38.46 ? O1G ATP 601 A 1 
HETATM 3 O O2G ATP . . . B 2 -2.181 -0.65 21.313 1 38.53 ? O2G ATP 601 A 1 
HETATM 4 O O3G ATP . . . B 2 -1.48 -2.618 22.672 1 38.59 ? O3G ATP 601 A 1 
HETATM 5 P PB ATP . . . B 2 -4.895 -2.139 22.358 1 36.85 ? PB ATP 601 A 1 
HETATM 6 O O1B ATP . . . B 2 -5.031 -2.751 23.681 1 36.96 ? O1B ATP 601 A 1 
HETATM 7 O O2B ATP . . . B 2 -4.866 -0.615 22.343 1 36.91 ? O2B ATP 601 A 1 
HETATM 8 O O3B ATP . . . B 2 -3.646 -2.643 21.503 1 37.72 ? O3B ATP 601 A 1 
HETATM 9 P PA ATP . . . B 2 -6.19 -2.381 19.867 1 34.03 ? PA ATP 601 A 1 
HETATM 10 O O1A ATP . . . B 2 -5.095 -3.126 19.164 1 34.01 ? O1A ATP 601 A 1 
HETATM 11 O O2A ATP . . . B 2 -6.233 -0.854 19.656 1 34.17 ? O2A ATP 601 A 1 
HETATM 12 O O3A ATP . . . B 2 -6.098 -2.602 21.433 1 35.44 ? O3A ATP 601 A 1 
HETATM 13 O O5' ATP . . . B 2 -7.624 -2.923 19.576 1 32.48 ? O5' ATP 601 A 1 
HETATM 14 C C5' ATP . . . B 2 -8.412 -2.435 18.477 1 30.87 ? C5' ATP 601 A 1 
HETATM 15 C C4' ATP . . . B 2 -9.886 -2.54 18.772 1 29.9 ? C4' ATP 601 A 1 
HETATM 16 O O4' ATP . . . B 2 -10.122 -3.142 20.068 1 29.3 ? O4' ATP 601 A 1 
HETATM 17 C C3' ATP . . . B 2 -10.628 -1.213 18.812 1 29.36 ? C3' ATP 601 A 1 
HETATM 18 O O3' ATP . . . B 2 -11.017 -0.805 17.505 1 29.3 ? O3' ATP 601 A 1 
HETATM 19 C C2' ATP . . . B 2 -11.83 -1.568 19.674 1 29.04 ? C2' ATP 601 A 1 
HETATM 20 O O2' ATP . . . B 2 -12.792 -2.323 18.943 1 28.87 ? O2' ATP 601 A 1 
HETATM 21 C C1' ATP . . . B 2 -11.151 -2.429 20.739 1 28.91 ? C1' ATP 601 A 1 
HETATM 22 N N9 ATP . . . B 2 -10.544 -1.657 21.818 1 28.65 ? N9 ATP 601 A 1 
HETATM 23 C C8 ATP . . . B 2 -9.286 -1.812 22.338 1 28.48 ? C8 ATP 601 A 1 
HETATM 24 N N7 ATP . . . B 2 -8.984 -0.946 23.272 1 28.4 ? N7 ATP 601 A 1 
HETATM 25 C C5 ATP . . . B 2 -10.134 -0.181 23.395 1 28.39 ? C5 ATP 601 A 1 
HETATM 26 C C6 ATP . . . B 2 -10.497 0.846 24.29 1 28.33 ? C6 ATP 601 A 1 
HETATM 27 N N6 ATP . . . B 2 -9.667 1.373 25.195 1 28.36 ? N6 ATP 601 A 1 
HETATM 28 N N1 ATP . . . B 2 -11.762 1.32 24.225 1 28.23 ? N1 ATP 601 A 1 
HETATM 29 C C2 ATP . . . B 2 -12.593 0.808 23.313 1 28.24 ? C2 ATP 601 A 1 
HETATM 30 N N3 ATP . . . B 2 -12.355 -0.148 22.412 1 28.34 ? N3 ATP 601 A 1 
HETATM 31 C C4 ATP . . . B 2 -11.103 -0.608 22.506 1 28.47 ? C4 ATP 601 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           232 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#