data_7WPN
#
_model_server_result.job_id            QVOJTjVsDhN2sMybL0mnsQ 
_model_server_result.datetime_utc      '2024-11-22 05:40:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7wpn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":603}' 
#
_entry.id    7WPN 
#
_exptl.entry_id    7WPN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              659.526 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(phenylmethyl) N-[(2R)-2-[2-(4-bromanyl-3-oxidanyl-phenyl)-5-(methylcarbamoyl)benzimidazol-1-yl]-2-(3,4-dimethoxyphenyl)ethyl]carbamate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7WPN 
_cell.length_a            60.487 
_cell.length_b            72.053 
_cell.length_c            115.488 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7WPN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C33 H31 Br N4 O6' 
_chem_comp.formula_weight    659.526 
_chem_comp.id                29I 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(phenylmethyl) N-[(2R)-2-[2-(4-bromanyl-3-oxidanyl-phenyl)-5-(methylcarbamoyl)benzimidazol-1-yl]-2-(3,4-dimethoxyphenyl)ethyl]carbamate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C N 29I sing 1 n n 
N C1 29I sing 2 n n 
C1 O 29I doub 3 n n 
C1 C2 29I sing 4 n n 
C2 C3 29I doub 5 n y 
C2 C7 29I sing 6 n y 
C3 C4 29I sing 7 n y 
C7 C6 29I doub 8 n y 
C4 C5 29I doub 9 n y 
C6 C5 29I sing 10 n y 
C6 N1 29I sing 11 n y 
C5 N2 29I sing 12 n y 
O2 C17 29I doub 13 n n 
N1 C8 29I doub 14 n y 
C16 N3 29I sing 15 n n 
C16 C15 29I sing 16 n n 
N2 C8 29I sing 17 n y 
N2 C15 29I sing 18 n n 
C17 N3 29I sing 19 n n 
C17 O3 29I sing 20 n n 
C8 C9 29I sing 21 n n 
C15 C25 29I sing 22 n n 
C31 O5 29I sing 23 n n 
C32 C25 29I doub 24 n y 
C32 C30 29I sing 25 n y 
C18 O3 29I sing 26 n n 
C18 C19 29I sing 27 n n 
O5 C30 29I sing 28 n n 
C25 C26 29I sing 29 n y 
C30 C28 29I doub 30 n y 
C9 C14 29I doub 31 n y 
C9 C10 29I sing 32 n y 
C14 C13 29I sing 33 n y 
C24 C19 29I doub 34 n y 
C24 C23 29I sing 35 n y 
C19 C20 29I sing 36 n y 
C26 C27 29I doub 37 n y 
C28 C27 29I sing 38 n y 
C28 O4 29I sing 39 n n 
C10 C11 29I doub 40 n y 
C13 O1 29I sing 41 n n 
C13 C12 29I doub 42 n y 
O4 C29 29I sing 43 n n 
C23 C22 29I doub 44 n y 
C20 C21 29I doub 45 n y 
C11 C12 29I sing 46 n y 
C12 BR 29I sing 47 n n 
C22 C21 29I sing 48 n y 
C11 H1 29I sing 49 n n 
C14 H2 29I sing 50 n n 
C3 H3 29I sing 51 n n 
C18 H4 29I sing 52 n n 
C18 H5 29I sing 53 n n 
C21 H6 29I sing 54 n n 
C20 H7 29I sing 55 n n 
C10 H8 29I sing 56 n n 
C16 H9 29I sing 57 n n 
C16 H10 29I sing 58 n n 
C24 H11 29I sing 59 n n 
C29 H12 29I sing 60 n n 
C29 H13 29I sing 61 n n 
C29 H14 29I sing 62 n n 
C27 H15 29I sing 63 n n 
C23 H16 29I sing 64 n n 
C26 H17 29I sing 65 n n 
C22 H18 29I sing 66 n n 
N3 H19 29I sing 67 n n 
C15 H20 29I sing 68 n n 
C32 H21 29I sing 69 n n 
C31 H22 29I sing 70 n n 
C31 H23 29I sing 71 n n 
C31 H24 29I sing 72 n n 
C4 H25 29I sing 73 n n 
O1 H26 29I sing 74 n n 
C7 H27 29I sing 75 n n 
N H28 29I sing 76 n n 
C H29 29I sing 77 n n 
C H30 29I sing 78 n n 
C H31 29I sing 79 n n 
#
_atom_sites.entry_id                     7WPN 
_atom_sites.fract_transf_matrix[1][1]    0.016532 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013879 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008659 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ATP A 1 601 1 ATP ATP . 
C 3 EDO A 1 602 1 EDO EDO . 
D 4 29I A 1 603 1 29I P21 . 
E 5 ACY A 1 604 1 ACY ACY . 
F 6 HOH A 1 701 21 HOH HOH . 
F 6 HOH A 2 702 4 HOH HOH . 
F 6 HOH A 3 703 5 HOH HOH . 
F 6 HOH A 4 704 27 HOH HOH . 
F 6 HOH A 5 705 9 HOH HOH . 
F 6 HOH A 6 706 26 HOH HOH . 
F 6 HOH A 7 707 15 HOH HOH . 
F 6 HOH A 8 708 22 HOH HOH . 
F 6 HOH A 9 709 7 HOH HOH . 
F 6 HOH A 10 710 18 HOH HOH . 
F 6 HOH A 11 711 10 HOH HOH . 
F 6 HOH A 12 712 3 HOH HOH . 
F 6 HOH A 13 713 19 HOH HOH . 
F 6 HOH A 14 714 1 HOH HOH . 
F 6 HOH A 15 715 6 HOH HOH . 
F 6 HOH A 16 716 28 HOH HOH . 
F 6 HOH A 17 717 2 HOH HOH . 
F 6 HOH A 18 718 13 HOH HOH . 
F 6 HOH A 19 719 16 HOH HOH . 
F 6 HOH A 20 720 23 HOH HOH . 
F 6 HOH A 21 721 24 HOH HOH . 
F 6 HOH A 22 722 8 HOH HOH . 
F 6 HOH A 23 723 20 HOH HOH . 
F 6 HOH A 24 724 14 HOH HOH . 
F 6 HOH A 25 725 11 HOH HOH . 
F 6 HOH A 26 726 17 HOH HOH . 
F 6 HOH A 27 727 12 HOH HOH . 
F 6 HOH A 28 728 25 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C11 29I . . . D 4 34.097 7.105 -14.494 1 17.77 ? C11 29I 603 A 1 
HETATM 2 C C14 29I . . . D 4 32.07 7.236 -16.394 1 18.09 ? C14 29I 603 A 1 
HETATM 3 C C9 29I . . . D 4 33.148 6.371 -16.579 1 18.67 ? C9 29I 603 A 1 
HETATM 4 C C13 29I . . . D 4 31.999 8.035 -15.262 1 17.59 ? C13 29I 603 A 1 
HETATM 5 C C8 29I . . . D 4 33.234 5.529 -17.785 1 19.82 ? C8 29I 603 A 1 
HETATM 6 C C5 29I . . . D 4 32.699 4.083 -19.385 1 20.74 ? C5 29I 603 A 1 
HETATM 7 C C1 29I . . . D 4 35.033 2.642 -22.634 1 22.39 ? C1 29I 603 A 1 
HETATM 8 N N2 29I . . . D 4 32.229 4.695 -18.225 1 20.55 ? N2 29I 603 A 1 
HETATM 9 C C12 29I . . . D 4 33.022 7.961 -14.323 1 17.4 ? C12 29I 603 A 1 
HETATM 10 C C19 29I . . . D 4 24.346 4.242 -16.083 1 23.19 ? C19 29I 603 A 1 
HETATM 11 C C3 29I . . . D 4 32.916 2.683 -21.289 1 21.31 ? C3 29I 603 A 1 
HETATM 12 C C6 29I . . . D 4 33.991 4.577 -19.561 1 20.75 ? C6 29I 603 A 1 
HETATM 13 C C18 29I . . . D 4 25.228 3.906 -17.243 1 23.09 ? C18 29I 603 A 1 
HETATM 14 C C21 29I . . . D 4 23.765 3.999 -13.757 1 23.66 ? C21 29I 603 A 1 
HETATM 15 C C20 29I . . . D 4 24.6 3.712 -14.825 1 23.39 ? C20 29I 603 A 1 
HETATM 16 C C10 29I . . . D 4 34.153 6.311 -15.62 1 18.18 ? C10 29I 603 A 1 
HETATM 17 C C16 29I . . . D 4 29.774 4.848 -18.454 1 21.45 ? C16 29I 603 A 1 
HETATM 18 C C17 29I . . . D 4 27.416 4.382 -18.015 1 22.54 ? C17 29I 603 A 1 
HETATM 19 C C24 29I . . . D 4 23.244 5.072 -16.246 1 23.35 ? C24 29I 603 A 1 
HETATM 20 C C28 29I . . . D 4 30.885 0.467 -15.817 1 21.51 ? C28 29I 603 A 1 
HETATM 21 C C29 29I . . . D 4 31.847 -1.412 -14.668 1 21.94 ? C29 29I 603 A 1 
HETATM 22 C C27 29I . . . D 4 31.862 1.39 -15.454 1 21.23 ? C27 29I 603 A 1 
HETATM 23 C C25 29I . . . D 4 30.936 2.993 -17.012 1 20.99 ? C25 29I 603 A 1 
HETATM 24 C C23 29I . . . D 4 22.411 5.36 -15.177 1 23.39 ? C23 29I 603 A 1 
HETATM 25 C C26 29I . . . D 4 31.876 2.639 -16.05 1 21.05 ? C26 29I 603 A 1 
HETATM 26 O O2 29I . . . D 4 27.32 3.543 -18.886 1 22.61 ? O2 29I 603 A 1 
HETATM 27 O O3 29I . . . D 4 26.408 4.752 -17.204 1 23.09 ? O3 29I 603 A 1 
HETATM 28 C C22 29I . . . D 4 22.669 4.823 -13.934 1 23.67 ? C22 29I 603 A 1 
HETATM 29 N N3 29I . . . D 4 28.536 5.055 -17.717 1 22.03 ? N3 29I 603 A 1 
HETATM 30 C C15 29I . . . D 4 30.945 4.401 -17.575 1 21.03 ? C15 29I 603 A 1 
HETATM 31 C C32 29I . . . D 4 29.99 2.055 -17.408 1 21.19 ? C32 29I 603 A 1 
HETATM 32 C C30 29I . . . D 4 29.941 0.808 -16.807 1 21.43 ? C30 29I 603 A 1 
HETATM 33 O O5 29I . . . D 4 29.011 -0.153 -17.089 1 21.85 ? O5 29I 603 A 1 
HETATM 34 C C31 29I . . . D 4 27.69 0.275 -17.43 1 21.99 ? C31 29I 603 A 1 
HETATM 35 O O4 29I . . . D 4 30.711 -0.767 -15.248 1 21.81 ? O4 29I 603 A 1 
HETATM 36 C C4 29I . . . D 4 32.141 3.143 -20.239 1 21.11 ? C4 29I 603 A 1 
HETATM 37 O O1 29I . . . D 4 30.948 8.871 -15.068 1 17.66 ? O1 29I 603 A 1 
HETATM 38 BR BR 29I . . . D 4 32.96 9.052 -12.782 1 15.93 ? BR 29I 603 A 1 
HETATM 39 N N1 29I . . . D 4 34.304 5.489 -18.553 1 20.19 ? N1 29I 603 A 1 
HETATM 40 C C7 29I . . . D 4 34.764 4.109 -20.624 1 21.09 ? C7 29I 603 A 1 
HETATM 41 C C2 29I . . . D 4 34.22 3.156 -21.487 1 21.51 ? C2 29I 603 A 1 
HETATM 42 O O 29I . . . D 4 36.251 2.514 -22.531 1 22.77 ? O 29I 603 A 1 
HETATM 43 N N 29I . . . D 4 34.378 2.358 -23.761 1 22.91 ? N 29I 603 A 1 
HETATM 44 C C 29I . . . D 4 34.924 1.461 -24.765 1 23.11 ? C 29I 603 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           44 
#