data_7WPT # _model_server_result.job_id -582Xd7vYtkOivKeHOIOTQ _model_server_result.datetime_utc '2024-12-12 14:03:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wpt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 7WPT # _exptl.entry_id 7WPT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WPT _cell.length_a 60.993 _cell.length_b 76.536 _cell.length_c 118.642 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WPT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7WPT _atom_sites.fract_transf_matrix[1][1] 0.016395 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013066 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008429 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 601 1 ATP ATP . C 3 XM0 A 1 602 1 XM0 DIA . D 4 EDO A 1 603 2 EDO EDO . E 4 EDO A 1 604 3 EDO EDO . F 4 EDO A 1 605 4 EDO EDO . G 4 EDO A 1 606 5 EDO EDO . H 5 GOL A 1 607 1 GOL GOL . I 6 HOH A 1 701 17 HOH HOH . I 6 HOH A 2 702 13 HOH HOH . I 6 HOH A 3 703 42 HOH HOH . I 6 HOH A 4 704 14 HOH HOH . I 6 HOH A 5 705 31 HOH HOH . I 6 HOH A 6 706 32 HOH HOH . I 6 HOH A 7 707 40 HOH HOH . I 6 HOH A 8 708 44 HOH HOH . I 6 HOH A 9 709 23 HOH HOH . I 6 HOH A 10 710 9 HOH HOH . I 6 HOH A 11 711 28 HOH HOH . I 6 HOH A 12 712 34 HOH HOH . I 6 HOH A 13 713 35 HOH HOH . I 6 HOH A 14 714 5 HOH HOH . I 6 HOH A 15 715 37 HOH HOH . I 6 HOH A 16 716 27 HOH HOH . I 6 HOH A 17 717 18 HOH HOH . I 6 HOH A 18 718 33 HOH HOH . I 6 HOH A 19 719 24 HOH HOH . I 6 HOH A 20 720 3 HOH HOH . I 6 HOH A 21 721 16 HOH HOH . I 6 HOH A 22 722 6 HOH HOH . I 6 HOH A 23 723 8 HOH HOH . I 6 HOH A 24 724 39 HOH HOH . I 6 HOH A 25 725 43 HOH HOH . I 6 HOH A 26 726 2 HOH HOH . I 6 HOH A 27 727 4 HOH HOH . I 6 HOH A 28 728 10 HOH HOH . I 6 HOH A 29 729 12 HOH HOH . I 6 HOH A 30 730 20 HOH HOH . I 6 HOH A 31 731 38 HOH HOH . I 6 HOH A 32 732 21 HOH HOH . I 6 HOH A 33 733 45 HOH HOH . I 6 HOH A 34 734 26 HOH HOH . I 6 HOH A 35 735 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 0.693 1.411 20.561 1 79.53 ? PG ATP 601 A 1 HETATM 2 O O1G ATP . . . B 2 0.867 1.035 21.995 1 79.49 ? O1G ATP 601 A 1 HETATM 3 O O2G ATP . . . B 2 -0.527 2.317 20.314 1 77.62 ? O2G ATP 601 A 1 HETATM 4 O O3G ATP . . . B 2 0.655 0.199 19.608 1 74.78 ? O3G ATP 601 A 1 HETATM 5 P PB ATP . . . B 2 3.484 2.076 20.378 1 73.08 ? PB ATP 601 A 1 HETATM 6 O O1B ATP . . . B 2 3.672 1.934 21.84 1 71.49 ? O1B ATP 601 A 1 HETATM 7 O O2B ATP . . . B 2 3.979 0.925 19.488 1 67.6 ? O2B ATP 601 A 1 HETATM 8 O O3B ATP . . . B 2 1.938 2.273 20.06 1 75.77 ? O3B ATP 601 A 1 HETATM 9 P PA ATP . . . B 2 4.45 3.972 18.347 1 70.91 ? PA ATP 601 A 1 HETATM 10 O O1A ATP . . . B 2 4.379 5.448 18.291 1 64.29 ? O1A ATP 601 A 1 HETATM 11 O O2A ATP . . . B 2 3.524 3.221 17.37 1 69.64 ? O2A ATP 601 A 1 HETATM 12 O O3A ATP . . . B 2 4.119 3.422 19.807 1 70.93 ? O3A ATP 601 A 1 HETATM 13 O O5' ATP . . . B 2 5.942 3.51 17.99 1 61.96 ? O5' ATP 601 A 1 HETATM 14 C C5' ATP . . . B 2 6.478 2.182 18.144 1 54.2 ? C5' ATP 601 A 1 HETATM 15 C C4' ATP . . . B 2 7.979 2.288 18.19 1 50.24 ? C4' ATP 601 A 1 HETATM 16 O O4' ATP . . . B 2 8.386 2.92 19.427 1 47.69 ? O4' ATP 601 A 1 HETATM 17 C C3' ATP . . . B 2 8.719 0.955 18.15 1 48.21 ? C3' ATP 601 A 1 HETATM 18 O O3' ATP . . . B 2 9.009 0.567 16.812 1 47.25 ? O3' ATP 601 A 1 HETATM 19 C C2' ATP . . . B 2 9.959 1.265 18.986 1 47.97 ? C2' ATP 601 A 1 HETATM 20 O O2' ATP . . . B 2 10.869 2.089 18.268 1 44.66 ? O2' ATP 601 A 1 HETATM 21 C C1' ATP . . . B 2 9.319 2.089 20.093 1 47.14 ? C1' ATP 601 A 1 HETATM 22 N N9 ATP . . . B 2 8.599 1.306 21.099 1 48.09 ? N9 ATP 601 A 1 HETATM 23 C C8 ATP . . . B 2 7.291 1.472 21.475 1 49.26 ? C8 ATP 601 A 1 HETATM 24 N N7 ATP . . . B 2 6.889 0.638 22.403 1 48.15 ? N7 ATP 601 A 1 HETATM 25 C C5 ATP . . . B 2 8.017 -0.123 22.671 1 48.87 ? C5 ATP 601 A 1 HETATM 26 C C6 ATP . . . B 2 8.275 -1.142 23.612 1 48.52 ? C6 ATP 601 A 1 HETATM 27 N N6 ATP . . . B 2 7.36 -1.613 24.469 1 45.1 ? N6 ATP 601 A 1 HETATM 28 N N1 ATP . . . B 2 9.528 -1.652 23.66 1 46.7 ? N1 ATP 601 A 1 HETATM 29 C C2 ATP . . . B 2 10.45 -1.175 22.818 1 46.14 ? C2 ATP 601 A 1 HETATM 30 N N3 ATP . . . B 2 10.321 -0.221 21.89 1 47.97 ? N3 ATP 601 A 1 HETATM 31 C C4 ATP . . . B 2 9.078 0.273 21.869 1 48.21 ? C4 ATP 601 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 420 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #