data_7WPT # _model_server_result.job_id 81oJbp0h7XXVxqJLiRjSFQ _model_server_result.datetime_utc '2024-12-12 13:57:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wpt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 7WPT # _exptl.entry_id 7WPT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WPT _cell.length_a 60.993 _cell.length_b 76.536 _cell.length_c 118.642 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WPT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 119 n n C1 C2 EDO sing 120 n n C1 H11 EDO sing 121 n n C1 H12 EDO sing 122 n n O1 HO1 EDO sing 123 n n C2 O2 EDO sing 124 n n C2 H21 EDO sing 125 n n C2 H22 EDO sing 126 n n O2 HO2 EDO sing 127 n n # _atom_sites.entry_id 7WPT _atom_sites.fract_transf_matrix[1][1] 0.016395 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013066 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008429 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 601 1 ATP ATP . C 3 XM0 A 1 602 1 XM0 DIA . D 4 EDO A 1 603 2 EDO EDO . E 4 EDO A 1 604 3 EDO EDO . F 4 EDO A 1 605 4 EDO EDO . G 4 EDO A 1 606 5 EDO EDO . H 5 GOL A 1 607 1 GOL GOL . I 6 HOH A 1 701 17 HOH HOH . I 6 HOH A 2 702 13 HOH HOH . I 6 HOH A 3 703 42 HOH HOH . I 6 HOH A 4 704 14 HOH HOH . I 6 HOH A 5 705 31 HOH HOH . I 6 HOH A 6 706 32 HOH HOH . I 6 HOH A 7 707 40 HOH HOH . I 6 HOH A 8 708 44 HOH HOH . I 6 HOH A 9 709 23 HOH HOH . I 6 HOH A 10 710 9 HOH HOH . I 6 HOH A 11 711 28 HOH HOH . I 6 HOH A 12 712 34 HOH HOH . I 6 HOH A 13 713 35 HOH HOH . I 6 HOH A 14 714 5 HOH HOH . I 6 HOH A 15 715 37 HOH HOH . I 6 HOH A 16 716 27 HOH HOH . I 6 HOH A 17 717 18 HOH HOH . I 6 HOH A 18 718 33 HOH HOH . I 6 HOH A 19 719 24 HOH HOH . I 6 HOH A 20 720 3 HOH HOH . I 6 HOH A 21 721 16 HOH HOH . I 6 HOH A 22 722 6 HOH HOH . I 6 HOH A 23 723 8 HOH HOH . I 6 HOH A 24 724 39 HOH HOH . I 6 HOH A 25 725 43 HOH HOH . I 6 HOH A 26 726 2 HOH HOH . I 6 HOH A 27 727 4 HOH HOH . I 6 HOH A 28 728 10 HOH HOH . I 6 HOH A 29 729 12 HOH HOH . I 6 HOH A 30 730 20 HOH HOH . I 6 HOH A 31 731 38 HOH HOH . I 6 HOH A 32 732 21 HOH HOH . I 6 HOH A 33 733 45 HOH HOH . I 6 HOH A 34 734 26 HOH HOH . I 6 HOH A 35 735 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 28.444 7.51 2.272 1 71.08 ? C1 EDO 603 A 1 HETATM 2 O O1 EDO . . . D 4 28.274 7.535 3.68 1 68.98 ? O1 EDO 603 A 1 HETATM 3 C C2 EDO . . . D 4 28.803 8.831 1.702 1 70.86 ? C2 EDO 603 A 1 HETATM 4 O O2 EDO . . . D 4 29.759 9.542 2.47 1 70.42 ? O2 EDO 603 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #