data_7WPX
#
_model_server_result.job_id            T0dLi9b-ze5BxOswXpjcBA 
_model_server_result.datetime_utc      '2025-06-22 06:00:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7wpx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    7WPX 
#
_exptl.entry_id    7WPX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7WPX 
_cell.length_a            60.888 
_cell.length_b            71.376 
_cell.length_c            120.815 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7WPX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 83 n n 
PG O2G ATP sing 84 n n 
PG O3G ATP sing 85 n n 
PG O3B ATP sing 86 n n 
O2G HOG2 ATP sing 87 n n 
O3G HOG3 ATP sing 88 n n 
PB O1B ATP doub 89 n n 
PB O2B ATP sing 90 n n 
PB O3B ATP sing 91 n n 
PB O3A ATP sing 92 n n 
O2B HOB2 ATP sing 93 n n 
PA O1A ATP doub 94 n n 
PA O2A ATP sing 95 n n 
PA O3A ATP sing 96 n n 
PA O5' ATP sing 97 n n 
O2A HOA2 ATP sing 98 n n 
O5' C5' ATP sing 99 n n 
C5' C4' ATP sing 100 n n 
C5' "H5'1" ATP sing 101 n n 
C5' "H5'2" ATP sing 102 n n 
C4' O4' ATP sing 103 n n 
C4' C3' ATP sing 104 n n 
C4' H4' ATP sing 105 n n 
O4' C1' ATP sing 106 n n 
C3' O3' ATP sing 107 n n 
C3' C2' ATP sing 108 n n 
C3' H3' ATP sing 109 n n 
O3' HO3' ATP sing 110 n n 
C2' O2' ATP sing 111 n n 
C2' C1' ATP sing 112 n n 
C2' H2' ATP sing 113 n n 
O2' HO2' ATP sing 114 n n 
C1' N9 ATP sing 115 n n 
C1' H1' ATP sing 116 n n 
N9 C8 ATP sing 117 n y 
N9 C4 ATP sing 118 n y 
C8 N7 ATP doub 119 n y 
C8 H8 ATP sing 120 n n 
N7 C5 ATP sing 121 n y 
C5 C6 ATP sing 122 n y 
C5 C4 ATP doub 123 n y 
C6 N6 ATP sing 124 n n 
C6 N1 ATP doub 125 n y 
N6 HN61 ATP sing 126 n n 
N6 HN62 ATP sing 127 n n 
N1 C2 ATP sing 128 n y 
C2 N3 ATP doub 129 n y 
C2 H2 ATP sing 130 n n 
N3 C4 ATP sing 131 n y 
#
_atom_sites.entry_id                     7WPX 
_atom_sites.fract_transf_matrix[1][1]    0.016424 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01401 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008277 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ATP A 1 601 1 ATP ATP . 
C 3 2I3 A 1 602 1 2I3 6CT . 
D 4 EDO A 1 603 1 EDO EDO . 
E 5 HOH A 1 701 23 HOH HOH . 
E 5 HOH A 2 702 2 HOH HOH . 
E 5 HOH A 3 703 4 HOH HOH . 
E 5 HOH A 4 704 13 HOH HOH . 
E 5 HOH A 5 705 12 HOH HOH . 
E 5 HOH A 6 706 10 HOH HOH . 
E 5 HOH A 7 707 9 HOH HOH . 
E 5 HOH A 8 708 14 HOH HOH . 
E 5 HOH A 9 709 22 HOH HOH . 
E 5 HOH A 10 710 16 HOH HOH . 
E 5 HOH A 11 711 20 HOH HOH . 
E 5 HOH A 12 712 21 HOH HOH . 
E 5 HOH A 13 713 1 HOH HOH . 
E 5 HOH A 14 714 6 HOH HOH . 
E 5 HOH A 15 715 3 HOH HOH . 
E 5 HOH A 16 716 18 HOH HOH . 
E 5 HOH A 17 717 8 HOH HOH . 
E 5 HOH A 18 718 7 HOH HOH . 
E 5 HOH A 19 719 11 HOH HOH . 
E 5 HOH A 20 720 19 HOH HOH . 
E 5 HOH A 21 721 15 HOH HOH . 
E 5 HOH A 22 722 5 HOH HOH . 
E 5 HOH A 23 723 17 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . B 2 -0.179 -0.688 20.141 1 42.85 ? PG ATP 601 A 1 
HETATM 2 O O1G ATP . . . B 2 0.854 -1.721 19.86 1 41.72 ? O1G ATP 601 A 1 
HETATM 3 O O2G ATP . . . B 2 -0.179 0.515 19.181 1 43.17 ? O2G ATP 601 A 1 
HETATM 4 O O3G ATP . . . B 2 -0.153 -0.15 21.582 1 41.99 ? O3G ATP 601 A 1 
HETATM 5 P PB ATP . . . B 2 -3.07 -0.699 20.215 1 38.31 ? PB ATP 601 A 1 
HETATM 6 O O1B ATP . . . B 2 -3.417 -0.698 21.655 1 38.65 ? O1B ATP 601 A 1 
HETATM 7 O O2B ATP . . . B 2 -3.093 0.662 19.521 1 39.23 ? O2B ATP 601 A 1 
HETATM 8 O O3B ATP . . . B 2 -1.63 -1.327 19.973 1 40.34 ? O3B ATP 601 A 1 
HETATM 9 P PA ATP . . . B 2 -3.96 -2.129 17.829 1 34.91 ? PA ATP 601 A 1 
HETATM 10 O O1A ATP . . . B 2 -3.467 -3.512 17.674 1 35.38 ? O1A ATP 601 A 1 
HETATM 11 O O2A ATP . . . B 2 -3.195 -1.057 17.05 1 35.02 ? O2A ATP 601 A 1 
HETATM 12 O O3A ATP . . . B 2 -3.985 -1.678 19.356 1 36.52 ? O3A ATP 601 A 1 
HETATM 13 O O5' ATP . . . B 2 -5.484 -1.976 17.428 1 33.77 ? O5' ATP 601 A 1 
HETATM 14 C C5' ATP . . . B 2 -6.119 -0.687 17.349 1 32.4 ? C5' ATP 601 A 1 
HETATM 15 C C4' ATP . . . B 2 -7.598 -0.852 17.572 1 32.01 ? C4' ATP 601 A 1 
HETATM 16 O O4' ATP . . . B 2 -7.837 -1.441 18.872 1 31.65 ? O4' ATP 601 A 1 
HETATM 17 C C3' ATP . . . B 2 -8.384 0.452 17.583 1 31.51 ? C3' ATP 601 A 1 
HETATM 18 O O3' ATP . . . B 2 -8.774 0.844 16.273 1 31.4 ? O3' ATP 601 A 1 
HETATM 19 C C2' ATP . . . B 2 -9.573 0.082 18.457 1 31.19 ? C2' ATP 601 A 1 
HETATM 20 O O2' ATP . . . B 2 -10.484 -0.749 17.75 1 31.79 ? O2' ATP 601 A 1 
HETATM 21 C C1' ATP . . . B 2 -8.863 -0.723 19.54 1 30.83 ? C1' ATP 601 A 1 
HETATM 22 N N9 ATP . . . B 2 -8.258 0.099 20.589 1 30.15 ? N9 ATP 601 A 1 
HETATM 23 C C8 ATP . . . B 2 -6.946 0.111 20.985 1 29.76 ? C8 ATP 601 A 1 
HETATM 24 N N7 ATP . . . B 2 -6.687 0.955 21.954 1 29.3 ? N7 ATP 601 A 1 
HETATM 25 C C5 ATP . . . B 2 -7.917 1.537 22.22 1 29.49 ? C5 ATP 601 A 1 
HETATM 26 C C6 ATP . . . B 2 -8.329 2.501 23.164 1 29.34 ? C6 ATP 601 A 1 
HETATM 27 N N6 ATP . . . B 2 -7.507 3.08 24.045 1 29.09 ? N6 ATP 601 A 1 
HETATM 28 N N1 ATP . . . B 2 -9.637 2.846 23.183 1 28.8 ? N1 ATP 601 A 1 
HETATM 29 C C2 ATP . . . B 2 -10.468 2.265 22.311 1 28.8 ? C2 ATP 601 A 1 
HETATM 30 N N3 ATP . . . B 2 -10.193 1.346 21.381 1 29.24 ? N3 ATP 601 A 1 
HETATM 31 C C4 ATP . . . B 2 -8.895 1.02 21.386 1 29.72 ? C4 ATP 601 A 1 
#
_model_server_stats.io_time_ms              42 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           261 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#