data_7WR5
#
_model_server_result.job_id            RKhJeqrnxRhASklWMC8Org 
_model_server_result.datetime_utc      '2024-12-22 02:29:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7wr5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    7WR5 
#
_exptl.entry_id    7WR5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              666.424 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[[(2~{R},3~{R},4~{S},5~{R})-5-(3-aminocarbonylpyridin-1-yl)-4-fluoranyl-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7WR5 
_cell.length_a            52.317 
_cell.length_b            120.074 
_cell.length_c            141.475 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7WR5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    'P 2 2ab (z,x,y)' 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H27 F N7 O13 P2' 
_chem_comp.formula_weight    666.424 
_chem_comp.id                5ZV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[[(2~{R},3~{R},4~{S},5~{R})-5-(3-aminocarbonylpyridin-1-yl)-4-fluoranyl-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O7N C7N 5ZV doub 1 n n 
C4N C5N 5ZV sing 2 n y 
C4N C3N 5ZV doub 3 n y 
C5N C6N 5ZV doub 4 n y 
C7N C3N 5ZV sing 5 n n 
C7N N7N 5ZV sing 6 n n 
C3N C2N 5ZV sing 7 n y 
C6N N1N 5ZV sing 8 n y 
N7A C8A 5ZV doub 9 n y 
N7A C5A 5ZV sing 10 n y 
N6A C6A 5ZV sing 11 n n 
C2N N1N 5ZV doub 12 n y 
N1N C1D 5ZV sing 13 n n 
C8A N9A 5ZV sing 14 n y 
F2D C2D 5ZV sing 15 n n 
O2N PN 5ZV doub 16 n n 
C5A C6A 5ZV doub 17 n y 
C5A C4A 5ZV sing 18 n y 
O2B C2B 5ZV sing 19 n n 
C6A N1A 5ZV sing 20 n y 
C2B C1B 5ZV sing 21 n n 
C2B C3B 5ZV sing 22 n n 
N9A C4A 5ZV sing 23 n y 
N9A C1B 5ZV sing 24 n n 
C1D C2D 5ZV sing 25 n n 
C1D O4D 5ZV sing 26 n n 
C2D C3D 5ZV sing 27 n n 
C4A N3A 5ZV doub 28 n y 
PN O1N 5ZV sing 29 n n 
PN O3 5ZV sing 30 n n 
PN O5D 5ZV sing 31 n n 
N1A C2A 5ZV doub 32 n y 
O3 PA 5ZV sing 33 n n 
O4D C4D 5ZV sing 34 n n 
C1B O4B 5ZV sing 35 n n 
C3B O3B 5ZV sing 36 n n 
C3B C4B 5ZV sing 37 n n 
C3D C4D 5ZV sing 38 n n 
C3D O3D 5ZV sing 39 n n 
C5B C4B 5ZV sing 40 n n 
C5B O5B 5ZV sing 41 n n 
N3A C2A 5ZV sing 42 n y 
O5D C5D 5ZV sing 43 n n 
C4D C5D 5ZV sing 44 n n 
C4B O4B 5ZV sing 45 n n 
O5B PA 5ZV sing 46 n n 
PA O1A 5ZV doub 47 n n 
PA O2A 5ZV sing 48 n n 
N7N H1 5ZV sing 49 n n 
N7N H2 5ZV sing 50 n n 
C4N H3 5ZV sing 51 n n 
C5N H4 5ZV sing 52 n n 
C6N H5 5ZV sing 53 n n 
C2N H6 5ZV sing 54 n n 
C1D H7 5ZV sing 55 n n 
C2D H8 5ZV sing 56 n n 
C3D H9 5ZV sing 57 n n 
O3D H10 5ZV sing 58 n n 
C4D H11 5ZV sing 59 n n 
C5D H12 5ZV sing 60 n n 
C5D H13 5ZV sing 61 n n 
O2A H15 5ZV sing 62 n n 
C5B H16 5ZV sing 63 n n 
C5B H17 5ZV sing 64 n n 
C4B H18 5ZV sing 65 n n 
C1B H19 5ZV sing 66 n n 
C2B H20 5ZV sing 67 n n 
O2B H21 5ZV sing 68 n n 
C3B H22 5ZV sing 69 n n 
O3B H23 5ZV sing 70 n n 
C8A H24 5ZV sing 71 n n 
N6A H25 5ZV sing 72 n n 
N6A H26 5ZV sing 73 n n 
C2A H27 5ZV sing 74 n n 
#
_atom_sites.entry_id                     7WR5 
_atom_sites.fract_transf_matrix[1][1]    0.019114 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008328 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007068 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          D 
_pdbx_nonpoly_scheme.entity_id        4 
_pdbx_nonpoly_scheme.mon_id           5ZV 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      501 
_pdbx_nonpoly_scheme.auth_seq_num     501 
_pdbx_nonpoly_scheme.pdb_mon_id       5ZV 
_pdbx_nonpoly_scheme.auth_mon_id      LIG 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O7N 5ZV . . . D 4 19.328 28.897 42.744 1 54.01 ? O7N 5ZV 501 A 1 
HETATM 2 C C7N 5ZV . . . D 4 18.469 28.893 43.562 1 68.26 ? C7N 5ZV 501 A 1 
HETATM 3 N N7N 5ZV . . . D 4 18.213 27.69 44.333 1 64.53 ? N7N 5ZV 501 A 1 
HETATM 4 C C3N 5ZV . . . D 4 17.649 30.162 43.805 1 74.43 ? C3N 5ZV 501 A 1 
HETATM 5 C C4N 5ZV . . . D 4 17.455 31.07 42.778 1 67.48 ? C4N 5ZV 501 A 1 
HETATM 6 C C5N 5ZV . . . D 4 16.708 32.204 43.045 1 74.25 ? C5N 5ZV 501 A 1 
HETATM 7 C C6N 5ZV . . . D 4 16.19 32.397 44.316 1 82.23 ? C6N 5ZV 501 A 1 
HETATM 8 C C2N 5ZV . . . D 4 17.093 30.418 45.049 1 91.45 ? C2N 5ZV 501 A 1 
HETATM 9 N N1N 5ZV . . . D 4 16.375 31.507 45.278 1 92.29 ? N1N 5ZV 501 A 1 
HETATM 10 C C1D 5ZV . . . D 4 15.843 31.714 46.599 1 93.2 ? C1D 5ZV 501 A 1 
HETATM 11 C C2D 5ZV . . . D 4 14.224 32.17 46.69 1 94.36 ? C2D 5ZV 501 A 1 
HETATM 12 F F2D 5ZV . . . D 4 13.61 32.33 45.418 1 89.98 ? F2D 5ZV 501 A 1 
HETATM 13 C C3D 5ZV . . . D 4 13.6 31.277 47.347 1 103.17 ? C3D 5ZV 501 A 1 
HETATM 14 O O3D 5ZV . . . D 4 12.659 31.919 48.326 1 113.55 ? O3D 5ZV 501 A 1 
HETATM 15 O O4D 5ZV . . . D 4 15.985 30.63 47.277 1 99.41 ? O4D 5ZV 501 A 1 
HETATM 16 C C4D 5ZV . . . D 4 14.697 30.466 48.123 1 98.27 ? C4D 5ZV 501 A 1 
HETATM 17 C C5D 5ZV . . . D 4 14.353 29.132 48.183 1 103.01 ? C5D 5ZV 501 A 1 
HETATM 18 O O5D 5ZV . . . D 4 15.523 28.376 48.053 1 109.35 ? O5D 5ZV 501 A 1 
HETATM 19 P PN 5ZV . . . D 4 15.558 27.134 46.973 1 97.3 ? PN 5ZV 501 A 1 
HETATM 20 O O1N 5ZV . . . D 4 16.855 26.375 47.12 1 93.85 ? O1N 5ZV 501 A 1 
HETATM 21 O O2N 5ZV . . . D 4 15.465 27.688 45.572 1 91.36 -1 O2N 5ZV 501 A 1 
HETATM 22 O O3 5ZV . . . D 4 14.285 26.121 47.253 1 110.43 ? O3 5ZV 501 A 1 
HETATM 23 P PA 5ZV . . . D 4 13.876 25.537 48.738 1 96.02 ? PA 5ZV 501 A 1 
HETATM 24 O O1A 5ZV . . . D 4 12.754 26.366 49.318 1 103.86 -1 O1A 5ZV 501 A 1 
HETATM 25 O O2A 5ZV . . . D 4 15.076 25.593 49.653 1 112.04 ? O2A 5ZV 501 A 1 
HETATM 26 O O5B 5ZV . . . D 4 13.379 23.975 48.586 1 90.46 ? O5B 5ZV 501 A 1 
HETATM 27 C C5B 5ZV . . . D 4 13.972 23.188 47.595 1 101.47 ? C5B 5ZV 501 A 1 
HETATM 28 C C4B 5ZV . . . D 4 15.294 22.671 48.126 1 99.1 ? C4B 5ZV 501 A 1 
HETATM 29 O O4B 5ZV . . . D 4 15.286 21.047 48.184 1 88.91 ? O4B 5ZV 501 A 1 
HETATM 30 C C1B 5ZV . . . D 4 16.085 20.613 47.288 1 82.44 ? C1B 5ZV 501 A 1 
HETATM 31 C C2B 5ZV . . . D 4 16.414 21.838 46.387 1 74.24 ? C2B 5ZV 501 A 1 
HETATM 32 O O2B 5ZV . . . D 4 17.696 21.759 45.94 1 74.16 ? O2B 5ZV 501 A 1 
HETATM 33 C C3B 5ZV . . . D 4 16.255 23.02 47.32 1 89.25 ? C3B 5ZV 501 A 1 
HETATM 34 O O3B 5ZV . . . D 4 17.523 23.245 48.106 1 86.96 ? O3B 5ZV 501 A 1 
HETATM 35 N N9A 5ZV . . . D 4 15.437 19.533 46.494 1 81.56 ? N9A 5ZV 501 A 1 
HETATM 36 C C8A 5ZV . . . D 4 14.786 19.673 45.35 1 72.93 ? C8A 5ZV 501 A 1 
HETATM 37 N N7A 5ZV . . . D 4 14.35 18.49 44.941 1 71.37 ? N7A 5ZV 501 A 1 
HETATM 38 C C5A 5ZV . . . D 4 14.723 17.563 45.839 1 78.87 ? C5A 5ZV 501 A 1 
HETATM 39 C C6A 5ZV . . . D 4 14.571 16.171 45.972 1 89.1 ? C6A 5ZV 501 A 1 
HETATM 40 N N6A 5ZV . . . D 4 13.851 15.42 44.96 1 85.84 ? N6A 5ZV 501 A 1 
HETATM 41 C C4A 5ZV . . . D 4 15.414 18.231 46.824 1 83.83 ? C4A 5ZV 501 A 1 
HETATM 42 N N3A 5ZV . . . D 4 15.908 17.534 47.857 1 94.24 ? N3A 5ZV 501 A 1 
HETATM 43 C C2A 5ZV . . . D 4 15.74 16.224 47.944 1 99.48 ? C2A 5ZV 501 A 1 
HETATM 44 N N1A 5ZV . . . D 4 15.082 15.539 47.019 1 94.12 ? N1A 5ZV 501 A 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           44 
#