data_7WR7 # _model_server_result.job_id ckthYg7tiaHZr_DP1WbVTA _model_server_result.datetime_utc '2024-10-19 11:52:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wr7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1105}' # _entry.id 7WR7 # _exptl.entry_id 7WR7 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 179.176 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-carbamimidamidobenzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WR7 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WR7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 127 A CYS 650 1_555 A SG CYS 145 A CYS 668 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 139 A CYS 662 1_555 A SG CYS 154 A CYS 677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 193 A CYS 716 1_555 A SG CYS 244 A CYS 767 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 249 A CYS 772 1_555 B SG CYS 112 B CYS 896 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 B SG CYS 26 B CYS 810 1_555 B SG CYS 42 B CYS 826 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 126 B CYS 910 1_555 B SG CYS 193 B CYS 977 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 B SG CYS 157 B CYS 941 1_555 B SG CYS 172 B CYS 956 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 B SG CYS 183 B CYS 967 1_555 B SG CYS 211 B CYS 995 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 11 A ASN 534 1_555 C C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale2 A ND2 ASN 107 A ASN 630 1_555 D C1 NAG . A NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 A ND2 ASN 159 A ASN 682 1_555 E C1 NAG . A NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 A ND2 ASN 183 A ASN 706 1_555 F C1 NAG . A NAG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 A ND2 ASN 202 A ASN 725 1_555 G C1 NAG . A NAG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 B ND2 ASN 64 B ASN 848 1_555 H C1 NAG . B NAG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale7 B ND2 ASN 103 B ASN 887 1_555 I C1 NAG . B NAG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale8 B ND2 ASN 125 B ASN 909 1_555 J C1 NAG . B NAG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale9 B ND2 ASN 165 B ASN 949 1_555 K C1 NAG . B NAG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale10 B OG SER 187 B SER 971 1_555 L C6 GBS . B GBS 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.519 ? # _chem_comp.formula 'C8 H9 N3 O2' _chem_comp.formula_weight 179.176 _chem_comp.id GBS _chem_comp.mon_nstd_flag . _chem_comp.name '4-carbamimidamidobenzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Nafamostat, bound form' # _atom_sites.entry_id 7WR7 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 801 785 NAG NAG . D 3 NAG A 1 802 786 NAG NAG . E 3 NAG A 1 803 787 NAG NAG . F 3 NAG A 1 804 788 NAG NAG . G 3 NAG A 1 805 789 NAG NAG . H 3 NAG B 1 1101 1020 NAG NAG . I 3 NAG B 1 1102 1021 NAG NAG . J 3 NAG B 1 1103 1022 NAG NAG . K 3 NAG B 1 1104 1023 NAG NAG . L 4 GBS B 1 1105 1101 GBS GBS . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 GBS . . . L 4 138.436 148.633 142.155 1 48.57 ? C2 GBS 1105 B 1 HETATM 2 C C3 GBS . . . L 4 137.351 148.437 143.005 1 49.9 ? C3 GBS 1105 B 1 HETATM 3 C C4 GBS . . . L 4 136.376 147.507 142.693 1 51.9 ? C4 GBS 1105 B 1 HETATM 4 C C6 GBS . . . L 4 135.341 145.838 141.152 1 55.22 ? C6 GBS 1105 B 1 HETATM 5 C C1 GBS . . . L 4 138.527 147.874 140.987 1 50.17 ? C1 GBS 1105 B 1 HETATM 6 N N4 GBS . . . L 4 140.072 150.338 140.402 1 44.27 ? N4 GBS 1105 B 1 HETATM 7 C C5 GBS . . . L 4 136.455 146.755 141.52 1 53.03 ? C5 GBS 1105 B 1 HETATM 8 C C18 GBS . . . L 4 140.202 150.271 141.73 1 44.54 ? C18 GBS 1105 B 1 HETATM 9 O O GBS . . . L 4 134.173 146.081 141.356 1 56.58 ? O GBS 1105 B 1 HETATM 10 N N2 GBS . . . L 4 139.434 149.555 142.564 1 46.68 ? N2 GBS 1105 B 1 HETATM 11 N N3 GBS . . . L 4 141.186 150.969 142.298 1 42.03 ? N3 GBS 1105 B 1 HETATM 12 C C GBS . . . L 4 137.551 146.942 140.678 1 50.85 ? C GBS 1105 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #